data_3LBH # _model_server_result.job_id x8MQZR82mP4V1sBKDLtmhw _model_server_result.datetime_utc '2024-11-02 10:27:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":167}' # _entry.id 3LBH # _exptl.entry_id 3LBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LBH _cell.length_a 88.61 _cell.length_b 88.61 _cell.length_c 134.719 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 44.305 76.738511 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -44.305 76.738511 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 C CA CA . A CA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc3 A OD1 ASP 30 A ASP 30 1_555 C CA CA . A CA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc5 A O ASP 107 A ASP 107 1_555 E CA CA . A CA 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc6 A O TYR 137 A TYR 137 1_555 E CA CA . A CA 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc7 C CA CA . A CA 167 1_555 H O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc8 C CA CA . A CA 167 1_555 H O HOH . A HOH 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc9 D MG MG . A MG 168 1_555 H O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc10 D MG MG . A MG 168 1_555 H O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc11 D MG MG . A MG 168 1_555 B O2G GNP . A GNP 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc12 D MG MG . A MG 168 1_555 B O2B GNP . A GNP 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc13 E CA CA . A CA 169 1_555 H O HOH . A HOH 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc14 E CA CA . A CA 169 1_555 H O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc15 E CA CA . A CA 169 1_555 H O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc16 E CA CA . A CA 169 1_555 G OXT ACT . A ACT 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc17 E CA CA . A CA 169 1_555 G O ACT . A ACT 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc18 F MG MG . A MG 170 1_555 H O HOH . A HOH 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc19 F MG MG . A MG 170 1_555 H O HOH . A HOH 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LBH _atom_sites.fract_transf_matrix[1][1] 0.011285 _atom_sites.fract_transf_matrix[1][2] 0.006516 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 528 528 GNP GNP . C 3 CA A 1 167 1 CA CA . D 4 MG A 1 168 2 MG MG . E 3 CA A 1 169 3 CA CA . F 4 MG A 1 170 4 MG MG . G 5 ACT A 1 719 719 ACT ACT . H 6 HOH A 1 200 1 HOH HOH . H 6 HOH A 2 201 2 HOH HOH . H 6 HOH A 3 202 3 HOH HOH . H 6 HOH A 4 203 4 HOH HOH . H 6 HOH A 5 204 5 HOH HOH . H 6 HOH A 6 205 6 HOH HOH . H 6 HOH A 7 206 7 HOH HOH . H 6 HOH A 8 207 8 HOH HOH . H 6 HOH A 9 208 9 HOH HOH . H 6 HOH A 10 209 10 HOH HOH . H 6 HOH A 11 210 11 HOH HOH . H 6 HOH A 12 211 12 HOH HOH . H 6 HOH A 13 212 14 HOH HOH . H 6 HOH A 14 213 15 HOH HOH . H 6 HOH A 15 214 16 HOH HOH . H 6 HOH A 16 215 17 HOH HOH . H 6 HOH A 17 216 18 HOH HOH . H 6 HOH A 18 217 19 HOH HOH . H 6 HOH A 19 218 20 HOH HOH . H 6 HOH A 20 219 21 HOH HOH . H 6 HOH A 21 220 22 HOH HOH . H 6 HOH A 22 221 23 HOH HOH . H 6 HOH A 23 222 24 HOH HOH . H 6 HOH A 24 223 25 HOH HOH . H 6 HOH A 25 224 26 HOH HOH . H 6 HOH A 26 225 28 HOH HOH . H 6 HOH A 27 226 29 HOH HOH . H 6 HOH A 28 227 829 HOH HOH . H 6 HOH A 29 228 30 HOH HOH . H 6 HOH A 30 229 31 HOH HOH . H 6 HOH A 31 230 32 HOH HOH . H 6 HOH A 32 231 33 HOH HOH . H 6 HOH A 33 232 34 HOH HOH . H 6 HOH A 34 233 35 HOH HOH . H 6 HOH A 35 234 36 HOH HOH . H 6 HOH A 36 235 37 HOH HOH . H 6 HOH A 37 236 38 HOH HOH . H 6 HOH A 38 237 39 HOH HOH . H 6 HOH A 39 238 40 HOH HOH . H 6 HOH A 40 239 42 HOH HOH . H 6 HOH A 41 240 43 HOH HOH . H 6 HOH A 42 241 44 HOH HOH . H 6 HOH A 43 242 45 HOH HOH . H 6 HOH A 44 243 46 HOH HOH . H 6 HOH A 45 244 47 HOH HOH . H 6 HOH A 46 245 48 HOH HOH . H 6 HOH A 47 246 49 HOH HOH . H 6 HOH A 48 247 50 HOH HOH . H 6 HOH A 49 248 51 HOH HOH . H 6 HOH A 50 249 52 HOH HOH . H 6 HOH A 51 250 53 HOH HOH . H 6 HOH A 52 251 54 HOH HOH . H 6 HOH A 53 252 57 HOH HOH . H 6 HOH A 54 253 58 HOH HOH . H 6 HOH A 55 254 60 HOH HOH . H 6 HOH A 56 255 63 HOH HOH . H 6 HOH A 57 256 65 HOH HOH . H 6 HOH A 58 257 66 HOH HOH . H 6 HOH A 59 258 68 HOH HOH . H 6 HOH A 60 259 69 HOH HOH . H 6 HOH A 61 260 71 HOH HOH . H 6 HOH A 62 261 72 HOH HOH . H 6 HOH A 63 262 73 HOH HOH . H 6 HOH A 64 263 74 HOH HOH . H 6 HOH A 65 264 76 HOH HOH . H 6 HOH A 66 265 77 HOH HOH . H 6 HOH A 67 266 78 HOH HOH . H 6 HOH A 68 267 79 HOH HOH . H 6 HOH A 69 268 82 HOH HOH . H 6 HOH A 70 269 84 HOH HOH . H 6 HOH A 71 270 89 HOH HOH . H 6 HOH A 72 271 91 HOH HOH . H 6 HOH A 73 272 94 HOH HOH . H 6 HOH A 74 273 96 HOH HOH . H 6 HOH A 75 274 97 HOH HOH . H 6 HOH A 76 275 98 HOH HOH . H 6 HOH A 77 276 100 HOH HOH . H 6 HOH A 78 277 101 HOH HOH . H 6 HOH A 79 278 103 HOH HOH . H 6 HOH A 80 279 104 HOH HOH . H 6 HOH A 81 280 108 HOH HOH . H 6 HOH A 82 281 111 HOH HOH . H 6 HOH A 83 282 115 HOH HOH . H 6 HOH A 84 283 116 HOH HOH . H 6 HOH A 85 284 119 HOH HOH . H 6 HOH A 86 285 120 HOH HOH . H 6 HOH A 87 286 126 HOH HOH . H 6 HOH A 88 287 128 HOH HOH . H 6 HOH A 89 288 129 HOH HOH . H 6 HOH A 90 289 137 HOH HOH . H 6 HOH A 91 290 140 HOH HOH . H 6 HOH A 92 291 143 HOH HOH . H 6 HOH A 93 292 147 HOH HOH . H 6 HOH A 94 293 152 HOH HOH . H 6 HOH A 95 294 153 HOH HOH . H 6 HOH A 96 295 156 HOH HOH . H 6 HOH A 97 296 158 HOH HOH . H 6 HOH A 98 297 160 HOH HOH . H 6 HOH A 99 298 860 HOH HOH . H 6 HOH A 100 299 162 HOH HOH . H 6 HOH A 101 300 171 HOH HOH . H 6 HOH A 102 301 871 HOH HOH . H 6 HOH A 103 302 174 HOH HOH . H 6 HOH A 104 303 175 HOH HOH . H 6 HOH A 105 304 176 HOH HOH . H 6 HOH A 106 305 183 HOH HOH . H 6 HOH A 107 306 185 HOH HOH . H 6 HOH A 108 307 187 HOH HOH . H 6 HOH A 109 308 188 HOH HOH . H 6 HOH A 110 309 189 HOH HOH . H 6 HOH A 111 310 196 HOH HOH . H 6 HOH A 112 311 197 HOH HOH . H 6 HOH A 113 312 202 HOH HOH . H 6 HOH A 114 313 225 HOH HOH . H 6 HOH A 115 314 226 HOH HOH . H 6 HOH A 116 315 826 HOH HOH . H 6 HOH A 117 316 230 HOH HOH . H 6 HOH A 118 317 254 HOH HOH . H 6 HOH A 119 318 316 HOH HOH . H 6 HOH A 120 319 324 HOH HOH . H 6 HOH A 121 320 364 HOH HOH . H 6 HOH A 122 321 366 HOH HOH . H 6 HOH A 123 322 367 HOH HOH . H 6 HOH A 124 323 372 HOH HOH . H 6 HOH A 125 324 373 HOH HOH . H 6 HOH A 126 325 376 HOH HOH . H 6 HOH A 127 326 379 HOH HOH . H 6 HOH A 128 327 382 HOH HOH . H 6 HOH A 129 328 384 HOH HOH . H 6 HOH A 130 329 385 HOH HOH . H 6 HOH A 131 330 386 HOH HOH . H 6 HOH A 132 331 387 HOH HOH . H 6 HOH A 133 332 389 HOH HOH . H 6 HOH A 134 333 391 HOH HOH . H 6 HOH A 135 334 392 HOH HOH . H 6 HOH A 136 335 394 HOH HOH . H 6 HOH A 137 336 395 HOH HOH . H 6 HOH A 138 337 396 HOH HOH . H 6 HOH A 139 338 700 HOH HOH . H 6 HOH A 140 339 701 HOH HOH . H 6 HOH A 141 340 1000 HOH HOH . H 6 HOH A 142 341 1001 HOH HOH . H 6 HOH A 143 342 1002 HOH HOH . H 6 HOH A 144 343 1003 HOH HOH . H 6 HOH A 145 344 1004 HOH HOH . H 6 HOH A 146 345 1005 HOH HOH . H 6 HOH A 147 346 1006 HOH HOH . H 6 HOH A 148 347 1007 HOH HOH . H 6 HOH A 149 348 1008 HOH HOH . H 6 HOH A 150 349 1009 HOH HOH . H 6 HOH A 151 350 1010 HOH HOH . H 6 HOH A 152 351 1011 HOH HOH . H 6 HOH A 153 352 1012 HOH HOH . H 6 HOH A 154 353 1013 HOH HOH . H 6 HOH A 155 354 1014 HOH HOH . H 6 HOH A 156 355 1015 HOH HOH . H 6 HOH A 157 356 1016 HOH HOH . H 6 HOH A 158 357 1017 HOH HOH . H 6 HOH A 159 358 1018 HOH HOH . H 6 HOH A 160 359 1019 HOH HOH . H 6 HOH A 161 360 1020 HOH HOH . H 6 HOH A 162 361 1021 HOH HOH . H 6 HOH A 163 362 1022 HOH HOH . H 6 HOH A 164 363 1023 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.213 _atom_site.Cartn_y 79.166 _atom_site.Cartn_z -72.4 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 167 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #