data_3LBI # _model_server_result.job_id 1oGprV9H2cqeXVV2N6aKgg _model_server_result.datetime_utc '2024-11-22 23:33:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":170}' # _entry.id 3LBI # _exptl.entry_id 3LBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LBI _cell.length_a 88.716 _cell.length_b 88.716 _cell.length_c 134.583 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 44.358 76.83031 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -44.358 76.83031 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 C CA CA . A CA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 A OD1 ASP 30 A ASP 30 1_555 C CA CA . A CA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc5 A O ASP 107 A ASP 107 1_555 E CA CA . A CA 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc6 A O TYR 137 A TYR 137 1_555 E CA CA . A CA 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc7 C CA CA . A CA 167 1_555 H O HOH . A HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc8 C CA CA . A CA 167 1_555 H O HOH . A HOH 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc9 D MG MG . A MG 168 1_555 H O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc10 D MG MG . A MG 168 1_555 H O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc11 D MG MG . A MG 168 1_555 B O2G GNP . A GNP 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc12 D MG MG . A MG 168 1_555 B O2B GNP . A GNP 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc13 E CA CA . A CA 169 1_555 H O HOH . A HOH 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc14 E CA CA . A CA 169 1_555 H O HOH . A HOH 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc15 E CA CA . A CA 169 1_555 G O ACT . A ACT 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc16 E CA CA . A CA 169 1_555 G OXT ACT . A ACT 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc17 F MG MG . A MG 170 1_555 H O HOH . A HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc18 F MG MG . A MG 170 1_555 H O HOH . A HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LBI _atom_sites.fract_transf_matrix[1][1] 0.011272 _atom_sites.fract_transf_matrix[1][2] 0.006508 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 528 528 GNP GNP . C 3 CA A 1 167 1 CA CA . D 4 MG A 1 168 2 MG MG . E 3 CA A 1 169 3 CA CA . F 4 MG A 1 170 4 MG MG . G 5 ACT A 1 719 719 ACT ACT . H 6 HOH A 1 200 50 HOH HOH . H 6 HOH A 2 201 1 HOH HOH . H 6 HOH A 3 202 2 HOH HOH . H 6 HOH A 4 203 3 HOH HOH . H 6 HOH A 5 204 4 HOH HOH . H 6 HOH A 6 205 5 HOH HOH . H 6 HOH A 7 206 6 HOH HOH . H 6 HOH A 8 207 7 HOH HOH . H 6 HOH A 9 208 8 HOH HOH . H 6 HOH A 10 209 9 HOH HOH . H 6 HOH A 11 210 10 HOH HOH . H 6 HOH A 12 211 11 HOH HOH . H 6 HOH A 13 212 12 HOH HOH . H 6 HOH A 14 213 14 HOH HOH . H 6 HOH A 15 214 15 HOH HOH . H 6 HOH A 16 215 16 HOH HOH . H 6 HOH A 17 216 816 HOH HOH . H 6 HOH A 18 217 17 HOH HOH . H 6 HOH A 19 218 18 HOH HOH . H 6 HOH A 20 219 19 HOH HOH . H 6 HOH A 21 220 20 HOH HOH . H 6 HOH A 22 221 21 HOH HOH . H 6 HOH A 23 222 22 HOH HOH . H 6 HOH A 24 223 23 HOH HOH . H 6 HOH A 25 224 25 HOH HOH . H 6 HOH A 26 225 26 HOH HOH . H 6 HOH A 27 226 29 HOH HOH . H 6 HOH A 28 227 30 HOH HOH . H 6 HOH A 29 228 31 HOH HOH . H 6 HOH A 30 229 32 HOH HOH . H 6 HOH A 31 230 33 HOH HOH . H 6 HOH A 32 231 34 HOH HOH . H 6 HOH A 33 232 36 HOH HOH . H 6 HOH A 34 233 836 HOH HOH . H 6 HOH A 35 234 38 HOH HOH . H 6 HOH A 36 235 39 HOH HOH . H 6 HOH A 37 236 40 HOH HOH . H 6 HOH A 38 237 42 HOH HOH . H 6 HOH A 39 238 43 HOH HOH . H 6 HOH A 40 239 44 HOH HOH . H 6 HOH A 41 240 45 HOH HOH . H 6 HOH A 42 241 47 HOH HOH . H 6 HOH A 43 242 48 HOH HOH . H 6 HOH A 44 243 49 HOH HOH . H 6 HOH A 45 244 51 HOH HOH . H 6 HOH A 46 245 52 HOH HOH . H 6 HOH A 47 246 54 HOH HOH . H 6 HOH A 48 247 57 HOH HOH . H 6 HOH A 49 248 58 HOH HOH . H 6 HOH A 50 249 59 HOH HOH . H 6 HOH A 51 250 60 HOH HOH . H 6 HOH A 52 251 63 HOH HOH . H 6 HOH A 53 252 65 HOH HOH . H 6 HOH A 54 253 66 HOH HOH . H 6 HOH A 55 254 69 HOH HOH . H 6 HOH A 56 255 72 HOH HOH . H 6 HOH A 57 256 73 HOH HOH . H 6 HOH A 58 257 74 HOH HOH . H 6 HOH A 59 258 76 HOH HOH . H 6 HOH A 60 259 77 HOH HOH . H 6 HOH A 61 260 78 HOH HOH . H 6 HOH A 62 261 79 HOH HOH . H 6 HOH A 63 262 82 HOH HOH . H 6 HOH A 64 263 84 HOH HOH . H 6 HOH A 65 264 86 HOH HOH . H 6 HOH A 66 265 89 HOH HOH . H 6 HOH A 67 266 96 HOH HOH . H 6 HOH A 68 267 97 HOH HOH . H 6 HOH A 69 268 100 HOH HOH . H 6 HOH A 70 269 111 HOH HOH . H 6 HOH A 71 270 115 HOH HOH . H 6 HOH A 72 271 120 HOH HOH . H 6 HOH A 73 272 122 HOH HOH . H 6 HOH A 74 273 126 HOH HOH . H 6 HOH A 75 274 128 HOH HOH . H 6 HOH A 76 275 129 HOH HOH . H 6 HOH A 77 276 140 HOH HOH . H 6 HOH A 78 277 143 HOH HOH . H 6 HOH A 79 278 152 HOH HOH . H 6 HOH A 80 279 156 HOH HOH . H 6 HOH A 81 280 158 HOH HOH . H 6 HOH A 82 281 160 HOH HOH . H 6 HOH A 83 282 162 HOH HOH . H 6 HOH A 84 283 175 HOH HOH . H 6 HOH A 85 284 176 HOH HOH . H 6 HOH A 86 285 183 HOH HOH . H 6 HOH A 87 286 188 HOH HOH . H 6 HOH A 88 287 189 HOH HOH . H 6 HOH A 89 288 197 HOH HOH . H 6 HOH A 90 289 225 HOH HOH . H 6 HOH A 91 290 226 HOH HOH . H 6 HOH A 92 291 230 HOH HOH . H 6 HOH A 93 292 254 HOH HOH . H 6 HOH A 94 293 366 HOH HOH . H 6 HOH A 95 294 367 HOH HOH . H 6 HOH A 96 295 372 HOH HOH . H 6 HOH A 97 296 373 HOH HOH . H 6 HOH A 98 297 376 HOH HOH . H 6 HOH A 99 298 384 HOH HOH . H 6 HOH A 100 299 385 HOH HOH . H 6 HOH A 101 300 394 HOH HOH . H 6 HOH A 102 301 1024 HOH HOH . H 6 HOH A 103 302 1025 HOH HOH . H 6 HOH A 104 303 1026 HOH HOH . H 6 HOH A 105 304 1027 HOH HOH . H 6 HOH A 106 305 1028 HOH HOH . H 6 HOH A 107 306 1029 HOH HOH . H 6 HOH A 108 307 1030 HOH HOH . H 6 HOH A 109 308 1031 HOH HOH . H 6 HOH A 110 309 1032 HOH HOH . H 6 HOH A 111 310 1033 HOH HOH . H 6 HOH A 112 311 1034 HOH HOH . H 6 HOH A 113 312 1035 HOH HOH . H 6 HOH A 114 313 1036 HOH HOH . H 6 HOH A 115 314 1037 HOH HOH . H 6 HOH A 116 315 1038 HOH HOH . H 6 HOH A 117 316 1039 HOH HOH . H 6 HOH A 118 317 1040 HOH HOH . H 6 HOH A 119 318 1041 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 0 _atom_site.Cartn_y 51.22 _atom_site.Cartn_z -86.086 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 35.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 170 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #