data_3LBJ
#
_model_server_result.job_id            lbu5gIEggvIv6b7nhyG8rA 
_model_server_result.datetime_utc      '2024-11-30 00:13:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lbj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":112}' 
#
_entry.id    3LBJ 
#
_exptl.entry_id    3LBJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              629.622 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-[(3S)-1-({6-chloro-3-[1-(4-chlorobenzyl)-4-phenyl-1H-imidazol-5-yl]-1H-indol-2-yl}carbonyl)pyrrolidin-3-yl]-N,N',N'-trimethylpropane-1,3-diamine" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LBJ 
_cell.length_a            80.97 
_cell.length_b            80.97 
_cell.length_c            80.97 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LBJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C35 H38 Cl2 N6 O' 
_chem_comp.formula_weight    629.622 
_chem_comp.id                WW8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-[(3S)-1-({6-chloro-3-[1-(4-chlorobenzyl)-4-phenyl-1H-imidazol-5-yl]-1H-indol-2-yl}carbonyl)pyrrolidin-3-yl]-N,N',N'-trimethylpropane-1,3-diamine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 WW8 doub 352 n y 
C1 C7 WW8 sing 353 n y 
C2 CL3 WW8 sing 354 n n 
C2 C4 WW8 sing 355 n y 
C4 C5 WW8 doub 356 n y 
C5 C6 WW8 sing 357 n y 
C6 C7 WW8 doub 358 n y 
C6 C25 WW8 sing 359 n y 
C7 N8 WW8 sing 360 n y 
N8 C9 WW8 sing 361 n y 
C9 C10 WW8 sing 362 n n 
C9 C25 WW8 doub 363 n y 
C10 O11 WW8 doub 364 n n 
C10 N12 WW8 sing 365 n n 
N12 C13 WW8 sing 366 n n 
N12 C24 WW8 sing 367 n n 
C13 C14 WW8 sing 368 n n 
C14 N15 WW8 sing 369 n n 
C14 C23 WW8 sing 370 n n 
N15 C16 WW8 sing 371 n n 
N15 C22 WW8 sing 372 n n 
C16 C17 WW8 sing 373 n n 
C17 C18 WW8 sing 374 n n 
C18 N19 WW8 sing 375 n n 
N19 C20 WW8 sing 376 n n 
N19 C21 WW8 sing 377 n n 
C23 C24 WW8 sing 378 n n 
C25 C26 WW8 sing 379 n y 
C26 C27 WW8 doub 380 n y 
C26 N36 WW8 sing 381 n y 
C27 C28 WW8 sing 382 n y 
C27 N34 WW8 sing 383 n y 
C28 C29 WW8 doub 384 n y 
C28 C33 WW8 sing 385 n y 
C29 C30 WW8 sing 386 n y 
C30 C31 WW8 doub 387 n y 
C31 C32 WW8 sing 388 n y 
C32 C33 WW8 doub 389 n y 
N34 C35 WW8 doub 390 n y 
C35 N36 WW8 sing 391 n y 
N36 C37 WW8 sing 392 n n 
C37 C38 WW8 sing 393 n n 
C38 C39 WW8 doub 394 n y 
C38 C44 WW8 sing 395 n y 
C39 C40 WW8 sing 396 n y 
C40 C41 WW8 doub 397 n y 
C41 CL42 WW8 sing 398 n n 
C41 C43 WW8 sing 399 n y 
C43 C44 WW8 doub 400 n y 
C1 H1 WW8 sing 401 n n 
C4 H4 WW8 sing 402 n n 
C5 H5 WW8 sing 403 n n 
N8 HN8 WW8 sing 404 n n 
C13 H13 WW8 sing 405 n n 
C13 H13A WW8 sing 406 n n 
C14 H14 WW8 sing 407 n n 
C16 H16 WW8 sing 408 n n 
C16 H16A WW8 sing 409 n n 
C17 H17 WW8 sing 410 n n 
C17 H17A WW8 sing 411 n n 
C18 H18 WW8 sing 412 n n 
C18 H18A WW8 sing 413 n n 
C20 H20 WW8 sing 414 n n 
C20 H20A WW8 sing 415 n n 
C20 H20B WW8 sing 416 n n 
C21 H21 WW8 sing 417 n n 
C21 H21A WW8 sing 418 n n 
C21 H21B WW8 sing 419 n n 
C22 H22 WW8 sing 420 n n 
C22 H22A WW8 sing 421 n n 
C22 H22B WW8 sing 422 n n 
C23 H23 WW8 sing 423 n n 
C23 H23A WW8 sing 424 n n 
C24 H24 WW8 sing 425 n n 
C24 H24A WW8 sing 426 n n 
C29 H29 WW8 sing 427 n n 
C30 H30 WW8 sing 428 n n 
C31 H31 WW8 sing 429 n n 
C32 H32 WW8 sing 430 n n 
C33 H33 WW8 sing 431 n n 
C35 H35 WW8 sing 432 n n 
C37 H37 WW8 sing 433 n n 
C37 H37A WW8 sing 434 n n 
C39 H39 WW8 sing 435 n n 
C40 H40 WW8 sing 436 n n 
C43 H43 WW8 sing 437 n n 
C44 H44 WW8 sing 438 n n 
#
_atom_sites.entry_id                     3LBJ 
_atom_sites.fract_transf_matrix[1][1]    0.01235 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01235 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01235 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 WW8 E 1 1 1 WW8 WW8 . 
C 2 WW8 E 1 112 112 WW8 WW8 . 
D 3 SO4 E 1 113 113 SO4 SO4 . 
E 4 HOH E 1 7 7 HOH HOH . 
E 4 HOH E 2 8 8 HOH HOH . 
E 4 HOH E 3 9 9 HOH HOH . 
E 4 HOH E 4 11 11 HOH HOH . 
E 4 HOH E 5 12 12 HOH HOH . 
E 4 HOH E 6 13 13 HOH HOH . 
E 4 HOH E 7 14 14 HOH HOH . 
E 4 HOH E 8 15 15 HOH HOH . 
E 4 HOH E 9 16 16 HOH HOH . 
E 4 HOH E 10 17 17 HOH HOH . 
E 4 HOH E 11 18 18 HOH HOH . 
E 4 HOH E 12 19 19 HOH HOH . 
E 4 HOH E 13 20 20 HOH HOH . 
E 4 HOH E 14 21 21 HOH HOH . 
E 4 HOH E 15 114 114 HOH HOH . 
E 4 HOH E 16 115 115 HOH HOH . 
E 4 HOH E 17 116 116 HOH HOH . 
E 4 HOH E 18 117 117 HOH HOH . 
E 4 HOH E 19 118 118 HOH HOH . 
E 4 HOH E 20 119 119 HOH HOH . 
E 4 HOH E 21 120 120 HOH HOH . 
E 4 HOH E 22 121 121 HOH HOH . 
E 4 HOH E 23 122 122 HOH HOH . 
E 4 HOH E 24 123 123 HOH HOH . 
E 4 HOH E 25 124 124 HOH HOH . 
E 4 HOH E 26 125 125 HOH HOH . 
E 4 HOH E 27 126 126 HOH HOH . 
E 4 HOH E 28 127 127 HOH HOH . 
E 4 HOH E 29 128 128 HOH HOH . 
E 4 HOH E 30 129 129 HOH HOH . 
E 4 HOH E 31 130 130 HOH HOH . 
E 4 HOH E 32 131 131 HOH HOH . 
E 4 HOH E 33 132 132 HOH HOH . 
E 4 HOH E 34 133 133 HOH HOH . 
E 4 HOH E 35 134 134 HOH HOH . 
E 4 HOH E 36 135 135 HOH HOH . 
E 4 HOH E 37 136 136 HOH HOH . 
E 4 HOH E 38 137 137 HOH HOH . 
E 4 HOH E 39 138 138 HOH HOH . 
E 4 HOH E 40 139 139 HOH HOH . 
E 4 HOH E 41 140 140 HOH HOH . 
E 4 HOH E 42 141 141 HOH HOH . 
E 4 HOH E 43 142 142 HOH HOH . 
E 4 HOH E 44 143 143 HOH HOH . 
E 4 HOH E 45 144 144 HOH HOH . 
E 4 HOH E 46 145 145 HOH HOH . 
E 4 HOH E 47 146 146 HOH HOH . 
E 4 HOH E 48 147 147 HOH HOH . 
E 4 HOH E 49 148 148 HOH HOH . 
E 4 HOH E 50 149 149 HOH HOH . 
E 4 HOH E 51 150 150 HOH HOH . 
E 4 HOH E 52 151 151 HOH HOH . 
E 4 HOH E 53 152 152 HOH HOH . 
E 4 HOH E 54 153 153 HOH HOH . 
E 4 HOH E 55 154 154 HOH HOH . 
E 4 HOH E 56 155 155 HOH HOH . 
E 4 HOH E 57 156 156 HOH HOH . 
E 4 HOH E 58 157 157 HOH HOH . 
E 4 HOH E 59 158 158 HOH HOH . 
E 4 HOH E 60 159 159 HOH HOH . 
E 4 HOH E 61 160 160 HOH HOH . 
E 4 HOH E 62 161 161 HOH HOH . 
E 4 HOH E 63 162 162 HOH HOH . 
E 4 HOH E 64 163 163 HOH HOH . 
E 4 HOH E 65 164 164 HOH HOH . 
E 4 HOH E 66 165 113 HOH HOH . 
E 4 HOH E 67 167 167 HOH HOH . 
E 4 HOH E 68 168 168 HOH HOH . 
E 4 HOH E 69 169 169 HOH HOH . 
E 4 HOH E 70 170 170 HOH HOH . 
E 4 HOH E 71 171 171 HOH HOH . 
E 4 HOH E 72 172 172 HOH HOH . 
E 4 HOH E 73 173 173 HOH HOH . 
E 4 HOH E 74 174 174 HOH HOH . 
E 4 HOH E 75 175 175 HOH HOH . 
E 4 HOH E 76 176 176 HOH HOH . 
E 4 HOH E 77 177 177 HOH HOH . 
E 4 HOH E 78 178 178 HOH HOH . 
E 4 HOH E 79 179 179 HOH HOH . 
E 4 HOH E 80 180 180 HOH HOH . 
E 4 HOH E 81 181 181 HOH HOH . 
E 4 HOH E 82 182 182 HOH HOH . 
E 4 HOH E 83 183 183 HOH HOH . 
E 4 HOH E 84 184 184 HOH HOH . 
E 4 HOH E 85 185 185 HOH HOH . 
E 4 HOH E 86 186 186 HOH HOH . 
E 4 HOH E 87 187 187 HOH HOH . 
E 4 HOH E 88 188 188 HOH HOH . 
E 4 HOH E 89 189 189 HOH HOH . 
E 4 HOH E 90 190 190 HOH HOH . 
E 4 HOH E 91 191 191 HOH HOH . 
E 4 HOH E 92 192 192 HOH HOH . 
E 4 HOH E 93 193 193 HOH HOH . 
E 4 HOH E 94 194 194 HOH HOH . 
E 4 HOH E 95 195 195 HOH HOH . 
E 4 HOH E 96 196 196 HOH HOH . 
E 4 HOH E 97 197 197 HOH HOH . 
E 4 HOH E 98 198 198 HOH HOH . 
E 4 HOH E 99 199 199 HOH HOH . 
E 4 HOH E 100 200 200 HOH HOH . 
E 4 HOH E 101 201 201 HOH HOH . 
E 4 HOH E 102 202 202 HOH HOH . 
E 4 HOH E 103 203 203 HOH HOH . 
E 4 HOH E 104 204 204 HOH HOH . 
E 4 HOH E 105 205 205 HOH HOH . 
E 4 HOH E 106 206 206 HOH HOH . 
E 4 HOH E 107 207 207 HOH HOH . 
E 4 HOH E 108 208 208 HOH HOH . 
E 4 HOH E 109 209 209 HOH HOH . 
E 4 HOH E 110 210 210 HOH HOH . 
E 4 HOH E 111 211 211 HOH HOH . 
E 4 HOH E 112 212 212 HOH HOH . 
E 4 HOH E 113 213 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 WW8 . . . C 2 23.289 -19.298 1.723 1 21.54 ? C1 WW8 112 E 1 
HETATM 2 C C2 WW8 . . . C 2 23.271 -18.045 2.356 1 24.94 ? C2 WW8 112 E 1 
HETATM 3 CL CL3 WW8 . . . C 2 24.59 -17.508 3.385 1 29.62 ? CL3 WW8 112 E 1 
HETATM 4 C C4 WW8 . . . C 2 22.161 -17.206 2.153 1 23.5 ? C4 WW8 112 E 1 
HETATM 5 C C5 WW8 . . . C 2 21.096 -17.613 1.339 1 24.95 ? C5 WW8 112 E 1 
HETATM 6 C C6 WW8 . . . C 2 21.128 -18.857 0.712 1 24.27 ? C6 WW8 112 E 1 
HETATM 7 C C7 WW8 . . . C 2 22.223 -19.699 0.911 1 22.91 ? C7 WW8 112 E 1 
HETATM 8 N N8 WW8 . . . C 2 22.003 -20.806 0.211 1 24.72 ? N8 WW8 112 E 1 
HETATM 9 C C9 WW8 . . . C 2 20.831 -20.741 -0.423 1 24.5 ? C9 WW8 112 E 1 
HETATM 10 C C10 WW8 . . . C 2 20.406 -21.925 -1.299 1 25.48 ? C10 WW8 112 E 1 
HETATM 11 O O11 WW8 . . . C 2 20.306 -21.728 -2.499 1 28.05 ? O11 WW8 112 E 1 
HETATM 12 N N12 WW8 . . . C 2 20.301 -23.177 -0.819 1 26.6 ? N12 WW8 112 E 1 
HETATM 13 C C13 WW8 . . . C 2 20.456 -23.49 0.604 1 27.11 ? C13 WW8 112 E 1 
HETATM 14 C C14 WW8 . . . C 2 21.001 -24.926 0.561 1 24.61 ? C14 WW8 112 E 1 
HETATM 15 N N15 WW8 . . . C 2 21.214 -25.525 1.966 1 25.4 ? N15 WW8 112 E 1 
HETATM 16 C C16 WW8 . . . C 2 21.475 -24.713 3.195 1 25.58 ? C16 WW8 112 E 1 
HETATM 17 C C17 WW8 . . . C 2 21.735 -25.383 4.618 1 23.94 ? C17 WW8 112 E 1 
HETATM 18 C C18 WW8 . . . C 2 22.532 -24.429 5.586 1 24.78 ? C18 WW8 112 E 1 
HETATM 19 N N19 WW8 . . . C 2 22.621 -24.814 7.037 1 24.37 ? N19 WW8 112 E 1 
HETATM 20 C C20 WW8 . . . C 2 23.66 -23.889 7.518 1 27.48 ? C20 WW8 112 E 1 
HETATM 21 C C21 WW8 . . . C 2 21.381 -24.705 7.862 1 24.17 ? C21 WW8 112 E 1 
HETATM 22 C C22 WW8 . . . C 2 21.081 -26.982 2.205 1 27.82 ? C22 WW8 112 E 1 
HETATM 23 C C23 WW8 . . . C 2 19.952 -25.519 -0.417 0.5 24.78 ? C23 WW8 112 E 1 
HETATM 24 C C24 WW8 . . . C 2 19.957 -24.431 -1.537 1 22.33 ? C24 WW8 112 E 1 
HETATM 25 C C25 WW8 . . . C 2 20.243 -19.497 -0.135 0.5 23.27 ? C25 WW8 112 E 1 
HETATM 26 C C26 WW8 . . . C 2 19.057 -18.844 -0.501 1 25.8 ? C26 WW8 112 E 1 
HETATM 27 C C27 WW8 . . . C 2 17.728 -19.26 -0.305 1 26.33 ? C27 WW8 112 E 1 
HETATM 28 C C28 WW8 . . . C 2 17.256 -20.455 0.255 1 25.55 ? C28 WW8 112 E 1 
HETATM 29 C C29 WW8 . . . C 2 15.998 -20.473 0.865 1 25.27 ? C29 WW8 112 E 1 
HETATM 30 C C30 WW8 . . . C 2 15.502 -21.658 1.42 1 26.21 ? C30 WW8 112 E 1 
HETATM 31 C C31 WW8 . . . C 2 16.243 -22.827 1.359 1 25.09 ? C31 WW8 112 E 1 
HETATM 32 C C32 WW8 . . . C 2 17.483 -22.817 0.734 1 28.04 ? C32 WW8 112 E 1 
HETATM 33 C C33 WW8 . . . C 2 17.985 -21.639 0.181 1 26.57 ? C33 WW8 112 E 1 
HETATM 34 N N34 WW8 . . . C 2 16.952 -18.288 -0.783 1 27.27 ? N34 WW8 112 E 1 
HETATM 35 C C35 WW8 . . . C 2 17.714 -17.283 -1.249 1 27.3 ? C35 WW8 112 E 1 
HETATM 36 N N36 WW8 . . . C 2 19.003 -17.61 -1.06 1 26.38 ? N36 WW8 112 E 1 
HETATM 37 C C37 WW8 . . . C 2 20.223 -16.803 -1.461 1 25.19 ? C37 WW8 112 E 1 
HETATM 38 C C38 WW8 . . . C 2 20.266 -15.299 -1.12 1 23.89 ? C38 WW8 112 E 1 
HETATM 39 C C39 WW8 . . . C 2 21.504 -14.666 -0.945 1 24.61 ? C39 WW8 112 E 1 
HETATM 40 C C40 WW8 . . . C 2 21.554 -13.32 -0.644 1 24.46 ? C40 WW8 112 E 1 
HETATM 41 C C41 WW8 . . . C 2 20.366 -12.622 -0.533 1 26.07 ? C41 WW8 112 E 1 
HETATM 42 CL CL42 WW8 . . . C 2 20.493 -10.973 -0.153 0.5 30.46 ? CL42 WW8 112 E 1 
HETATM 43 C C43 WW8 . . . C 2 19.127 -13.237 -0.695 1 24.25 ? C43 WW8 112 E 1 
HETATM 44 C C44 WW8 . . . C 2 19.076 -14.596 -0.998 1 24.55 ? C44 WW8 112 E 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#