data_3LBW # _model_server_result.job_id ayfIu5N_cvkEo2Abr6HHEw _model_server_result.datetime_utc '2024-11-25 09:25:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":48}' # _entry.id 3LBW # _exptl.entry_id 3LBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.146 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description Xylitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LBW _cell.length_a 48.665 _cell.length_b 79.091 _cell.length_c 48.559 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C7 Z82 . A Z82 24 1_555 A N PRO 1 A PRO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C LEU 22 A LEU 46 1_555 A N NH2 23 A NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 G C7 Z82 . B Z82 24 1_555 B N PRO 1 B PRO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale4 B C LEU 22 B LEU 46 1_555 B N NH2 23 B NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 I C7 Z82 . C Z82 24 1_555 C N PRO 1 C PRO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 C C LEU 22 C LEU 46 1_555 C N NH2 23 C NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 L C7 Z82 . D Z82 24 1_555 D N PRO 1 D PRO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale8 D C LEU 22 D LEU 46 1_555 D N NH2 23 D NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? # _chem_comp.formula 'C5 H12 O5' _chem_comp.formula_weight 152.146 _chem_comp.id XYL _chem_comp.mon_nstd_flag . _chem_comp.name Xylitol _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms D-Xylitol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XYL sing 222 n n C1 O1 XYL sing 223 n n C1 H11 XYL sing 224 n n C1 H12 XYL sing 225 n n C2 C3 XYL sing 226 n n C2 O2 XYL sing 227 n n C2 H2 XYL sing 228 n n C3 C4 XYL sing 229 n n C3 O3 XYL sing 230 n n C3 H3 XYL sing 231 n n C4 C5 XYL sing 232 n n C4 O4 XYL sing 233 n n C4 H4 XYL sing 234 n n C5 O5 XYL sing 235 n n C5 H51 XYL sing 236 n n C5 H52 XYL sing 237 n n O1 HO1 XYL sing 238 n n O2 HO2 XYL sing 239 n n O3 HO3 XYL sing 240 n n O4 HO4 XYL sing 241 n n O5 HO5 XYL sing 242 n n # _atom_sites.entry_id 3LBW _atom_sites.fract_transf_matrix[1][1] 0.020549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012644 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Z82 A 1 24 24 Z82 Z82 . F 3 PEG A 1 48 48 PEG PEG . G 2 Z82 B 1 24 24 Z82 Z82 . H 4 XYL B 1 48 48 XYL XYL . I 2 Z82 C 1 24 24 Z82 Z82 . J 3 PEG C 1 49 49 PEG PEG . K 3 PEG C 1 50 50 PEG PEG . L 2 Z82 D 1 24 24 Z82 Z82 . M 5 HOH A 1 100 100 HOH HOH . M 5 HOH A 2 101 101 HOH HOH . M 5 HOH A 3 102 102 HOH HOH . M 5 HOH A 4 103 103 HOH HOH . N 5 HOH B 1 104 104 HOH HOH . N 5 HOH B 2 105 105 HOH HOH . N 5 HOH B 3 106 106 HOH HOH . N 5 HOH B 4 107 107 HOH HOH . N 5 HOH B 5 108 108 HOH HOH . N 5 HOH B 6 109 109 HOH HOH . N 5 HOH B 7 110 110 HOH HOH . N 5 HOH B 8 111 111 HOH HOH . N 5 HOH B 9 112 112 HOH HOH . N 5 HOH B 10 113 113 HOH HOH . O 5 HOH C 1 114 114 HOH HOH . O 5 HOH C 2 115 115 HOH HOH . O 5 HOH C 3 116 116 HOH HOH . O 5 HOH C 4 117 117 HOH HOH . O 5 HOH C 5 118 118 HOH HOH . P 5 HOH D 1 119 119 HOH HOH . P 5 HOH D 2 120 120 HOH HOH . P 5 HOH D 3 121 121 HOH HOH . P 5 HOH D 4 122 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XYL . . . H 4 -2.894 -17.714 16.205 1 45.42 ? C1 XYL 48 B 1 HETATM 2 C C2 XYL . . . H 4 -3.687 -18.294 17.38 1 45.58 ? C2 XYL 48 B 1 HETATM 3 C C3 XYL . . . H 4 -4.245 -19.707 17.134 1 45.7 ? C3 XYL 48 B 1 HETATM 4 C C4 XYL . . . H 4 -3.2 -20.836 17.091 1 45.51 ? C4 XYL 48 B 1 HETATM 5 C C5 XYL . . . H 4 -3.872 -22.205 17.152 1 45.44 ? C5 XYL 48 B 1 HETATM 6 O O1 XYL . . . H 4 -3.577 -16.576 15.661 1 44.99 ? O1 XYL 48 B 1 HETATM 7 O O2 XYL . . . H 4 -2.879 -18.28 18.568 1 45.92 ? O2 XYL 48 B 1 HETATM 8 O O3 XYL . . . H 4 -5.046 -19.713 15.943 1 46.65 ? O3 XYL 48 B 1 HETATM 9 O O4 XYL . . . H 4 -2.401 -20.771 15.903 1 45.83 ? O4 XYL 48 B 1 HETATM 10 O O5 XYL . . . H 4 -2.898 -23.246 17.292 1 44.81 ? O5 XYL 48 B 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #