data_3LBZ
#
_model_server_result.job_id            YxF2KS-_fUHSLBpoO8gDYw 
_model_server_result.datetime_utc      '2024-11-14 04:52:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lbz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    3LBZ 
#
_exptl.entry_id    3LBZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              457.276 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2-[(5Z)-5-(5-bromo-2-oxo-1,2-dihydro-3H-indol-3-ylidene)-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]butanedioic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.7 
_cell.angle_gamma         90 
_cell.entry_id            3LBZ 
_cell.length_a            101.712 
_cell.length_b            38.611 
_cell.length_c            78.817 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LBZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
#
_chem_comp.formula           'C15 H9 Br N2 O6 S2' 
_chem_comp.formula_weight    457.276 
_chem_comp.id                Z89 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2-[(5Z)-5-(5-bromo-2-oxo-1,2-dihydro-3H-indol-3-ylidene)-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]butanedioic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     N-[(1S)-2-AMINO-1-(2,4-DICHLOROBENZYL)ETHYL]-5-[2-(METHYLAMINO)PYRIMIDIN-4-YL]THIOPHENE-2-CARBOXAMIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA C Z89 sing 370 n n 
C OXT Z89 doub 371 n n 
C O Z89 sing 372 n n 
CAW N Z89 sing 373 n n 
N CAM Z89 sing 374 n n 
N CA Z89 sing 375 n n 
O HO Z89 sing 376 n n 
CA CB Z89 sing 377 n n 
CA HA Z89 sing 378 n n 
CB CG Z89 sing 379 n n 
CB HB Z89 sing 380 n n 
CB HBA Z89 sing 381 n n 
OD2 CG Z89 doub 382 n n 
CG OD1 Z89 sing 383 n n 
NAJ CAA Z89 sing 384 n n 
CAA CAB Z89 doub 385 n y 
CAA CAG Z89 sing 386 n y 
CAH CAB Z89 sing 387 n n 
CAB CAC Z89 sing 388 n y 
CAC CAD Z89 doub 389 n y 
CAC HAC Z89 sing 390 n n 
CAF CAD Z89 sing 391 n y 
CAD BRAE Z89 sing 392 n n 
CAG CAF Z89 doub 393 n y 
CAF HAF Z89 sing 394 n n 
CAG HAG Z89 sing 395 n n 
CAI CAH Z89 sing 396 n n 
CAL CAH Z89 doub 397 n n 
OAK CAI Z89 doub 398 z n 
CAI NAJ Z89 sing 399 n n 
NAJ HNAJ Z89 sing 400 n n 
SAY CAL Z89 sing 401 n n 
CAL CAM Z89 sing 402 n n 
CAM OAZ Z89 doub 403 n n 
SAY CAW Z89 sing 404 n n 
SAX CAW Z89 doub 405 n n 
OD1 HOD1 Z89 sing 406 n n 
#
_atom_sites.entry_id                     3LBZ 
_atom_sites.fract_transf_matrix[1][1]    0.009832 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004521 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013965 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Z88 A 1 200 200 Z88 Z88 . 
D 3 Z89 A 1 201 201 Z89 Z89 . 
E 3 Z89 A 1 202 201 Z89 Z89 . 
F 2 Z88 B 1 200 200 Z88 Z88 . 
G 3 Z89 B 1 203 203 Z89 Z89 . 
H 4 HOH A 1 300 300 HOH HOH . 
H 4 HOH A 2 303 303 HOH HOH . 
H 4 HOH A 3 304 304 HOH HOH . 
H 4 HOH A 4 305 305 HOH HOH . 
H 4 HOH A 5 306 306 HOH HOH . 
H 4 HOH A 6 307 307 HOH HOH . 
H 4 HOH A 7 309 309 HOH HOH . 
H 4 HOH A 8 310 310 HOH HOH . 
H 4 HOH A 9 314 314 HOH HOH . 
I 4 HOH B 1 301 301 HOH HOH . 
I 4 HOH B 2 302 302 HOH HOH . 
I 4 HOH B 3 308 308 HOH HOH . 
I 4 HOH B 4 311 311 HOH HOH . 
I 4 HOH B 5 312 312 HOH HOH . 
I 4 HOH B 6 313 313 HOH HOH . 
I 4 HOH B 7 315 315 HOH HOH . 
I 4 HOH B 8 316 316 HOH HOH . 
I 4 HOH B 9 317 317 HOH HOH . 
I 4 HOH B 10 318 318 HOH HOH . 
I 4 HOH B 11 319 319 HOH HOH . 
I 4 HOH B 12 320 320 HOH HOH . 
I 4 HOH B 13 321 321 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C Z89 . . . D 3 -5.864 6.985 20.367 0.8 92.73 ? C Z89 201 A 1 
HETATM 2 N N Z89 . . . D 3 -5.456 5.267 18.824 0.8 91.97 ? N Z89 201 A 1 
HETATM 3 O O Z89 . . . D 3 -6.492 6.06 20.968 0.8 92.94 ? O Z89 201 A 1 
HETATM 4 C CA Z89 . . . D 3 -4.874 6.584 19.27 0.8 91.84 ? CA Z89 201 A 1 
HETATM 5 C CB Z89 . . . D 3 -3.477 6.554 19.925 0.8 91.25 ? CB Z89 201 A 1 
HETATM 6 C CG Z89 . . . D 3 -2.958 7.974 20.174 0.8 90.74 ? CG Z89 201 A 1 
HETATM 7 C CAA Z89 . . . D 3 -4.138 -0.232 18.95 0.8 91.54 ? CAA Z89 201 A 1 
HETATM 8 C CAB Z89 . . . D 3 -4.109 1.154 19.087 0.8 91.69 ? CAB Z89 201 A 1 
HETATM 9 C CAC Z89 . . . D 3 -2.992 1.817 19.622 0.8 91.74 ? CAC Z89 201 A 1 
HETATM 10 C CAD Z89 . . . D 3 -1.871 1.099 20.047 0.8 91.85 ? CAD Z89 201 A 1 
HETATM 11 BR BRAE Z89 . . . D 3 -0.314 1.925 20.802 0.8 91.56 ? BRAE Z89 201 A 1 
HETATM 12 C CAF Z89 . . . D 3 -1.914 -0.278 19.904 0.8 91.69 ? CAF Z89 201 A 1 
HETATM 13 C CAG Z89 . . . D 3 -3.025 -0.921 19.376 0.8 91.67 ? CAG Z89 201 A 1 
HETATM 14 C CAH Z89 . . . D 3 -5.324 1.595 18.578 0.8 91.71 ? CAH Z89 201 A 1 
HETATM 15 C CAI Z89 . . . D 3 -6.016 0.474 18.164 0.8 91.76 ? CAI Z89 201 A 1 
HETATM 16 N NAJ Z89 . . . D 3 -5.312 -0.646 18.394 0.8 91.52 ? NAJ Z89 201 A 1 
HETATM 17 O OAK Z89 . . . D 3 -7.182 0.455 17.635 0.8 91.75 ? OAK Z89 201 A 1 
HETATM 18 C CAL Z89 . . . D 3 -5.746 2.944 18.511 0.8 92.34 ? CAL Z89 201 A 1 
HETATM 19 C CAM Z89 . . . D 3 -4.935 4.028 18.971 0.8 92.39 ? CAM Z89 201 A 1 
HETATM 20 C CAW Z89 . . . D 3 -6.7 5.092 18.273 0.8 92.11 ? CAW Z89 201 A 1 
HETATM 21 S SAX Z89 . . . D 3 -7.656 6.566 17.967 0.8 92.86 ? SAX Z89 201 A 1 
HETATM 22 S SAY Z89 . . . D 3 -7.299 3.472 17.852 0.8 92.29 ? SAY Z89 201 A 1 
HETATM 23 O OAZ Z89 . . . D 3 -3.736 3.904 19.476 0.8 91.95 ? OAZ Z89 201 A 1 
HETATM 24 O OD1 Z89 . . . D 3 -2.797 8.408 21.347 0.8 87.36 ? OD1 Z89 201 A 1 
HETATM 25 O OD2 Z89 . . . D 3 -2.719 8.703 19.183 0.8 87.98 ? OD2 Z89 201 A 1 
HETATM 26 O OXT Z89 . . . D 3 -6.08 8.202 20.658 0.8 92.89 ? OXT Z89 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#