data_3LBZ # _model_server_result.job_id ETPY_fWb5ZVDIClw0Hkzsg _model_server_result.datetime_utc '2024-11-14 04:43:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 3LBZ # _exptl.entry_id 3LBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.276 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(5Z)-5-(5-bromo-2-oxo-1,2-dihydro-3H-indol-3-ylidene)-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]butanedioic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.7 _cell.angle_gamma 90 _cell.entry_id 3LBZ _cell.length_a 101.712 _cell.length_b 38.611 _cell.length_c 78.817 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # _chem_comp.formula 'C15 H9 Br N2 O6 S2' _chem_comp.formula_weight 457.276 _chem_comp.id Z89 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(5Z)-5-(5-bromo-2-oxo-1,2-dihydro-3H-indol-3-ylidene)-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]butanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-[(1S)-2-AMINO-1-(2,4-DICHLOROBENZYL)ETHYL]-5-[2-(METHYLAMINO)PYRIMIDIN-4-YL]THIOPHENE-2-CARBOXAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C Z89 sing 370 n n C OXT Z89 doub 371 n n C O Z89 sing 372 n n CAW N Z89 sing 373 n n N CAM Z89 sing 374 n n N CA Z89 sing 375 n n O HO Z89 sing 376 n n CA CB Z89 sing 377 n n CA HA Z89 sing 378 n n CB CG Z89 sing 379 n n CB HB Z89 sing 380 n n CB HBA Z89 sing 381 n n OD2 CG Z89 doub 382 n n CG OD1 Z89 sing 383 n n NAJ CAA Z89 sing 384 n n CAA CAB Z89 doub 385 n y CAA CAG Z89 sing 386 n y CAH CAB Z89 sing 387 n n CAB CAC Z89 sing 388 n y CAC CAD Z89 doub 389 n y CAC HAC Z89 sing 390 n n CAF CAD Z89 sing 391 n y CAD BRAE Z89 sing 392 n n CAG CAF Z89 doub 393 n y CAF HAF Z89 sing 394 n n CAG HAG Z89 sing 395 n n CAI CAH Z89 sing 396 n n CAL CAH Z89 doub 397 n n OAK CAI Z89 doub 398 z n CAI NAJ Z89 sing 399 n n NAJ HNAJ Z89 sing 400 n n SAY CAL Z89 sing 401 n n CAL CAM Z89 sing 402 n n CAM OAZ Z89 doub 403 n n SAY CAW Z89 sing 404 n n SAX CAW Z89 doub 405 n n OD1 HOD1 Z89 sing 406 n n # _atom_sites.entry_id 3LBZ _atom_sites.fract_transf_matrix[1][1] 0.009832 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004521 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Z88 A 1 200 200 Z88 Z88 . D 3 Z89 A 1 201 201 Z89 Z89 . E 3 Z89 A 1 202 201 Z89 Z89 . F 2 Z88 B 1 200 200 Z88 Z88 . G 3 Z89 B 1 203 203 Z89 Z89 . H 4 HOH A 1 300 300 HOH HOH . H 4 HOH A 2 303 303 HOH HOH . H 4 HOH A 3 304 304 HOH HOH . H 4 HOH A 4 305 305 HOH HOH . H 4 HOH A 5 306 306 HOH HOH . H 4 HOH A 6 307 307 HOH HOH . H 4 HOH A 7 309 309 HOH HOH . H 4 HOH A 8 310 310 HOH HOH . H 4 HOH A 9 314 314 HOH HOH . I 4 HOH B 1 301 301 HOH HOH . I 4 HOH B 2 302 302 HOH HOH . I 4 HOH B 3 308 308 HOH HOH . I 4 HOH B 4 311 311 HOH HOH . I 4 HOH B 5 312 312 HOH HOH . I 4 HOH B 6 313 313 HOH HOH . I 4 HOH B 7 315 315 HOH HOH . I 4 HOH B 8 316 316 HOH HOH . I 4 HOH B 9 317 317 HOH HOH . I 4 HOH B 10 318 318 HOH HOH . I 4 HOH B 11 319 319 HOH HOH . I 4 HOH B 12 320 320 HOH HOH . I 4 HOH B 13 321 321 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C Z89 . . . E 3 6.261 -28.609 20.464 0.7 90.07 ? C Z89 202 A 1 HETATM 2 N N Z89 . . . E 3 5.91 -26.757 18.995 0.7 89.76 ? N Z89 202 A 1 HETATM 3 O O Z89 . . . E 3 6.792 -27.736 21.219 0.7 89.75 ? O Z89 202 A 1 HETATM 4 C CA Z89 . . . E 3 5.349 -28.128 19.334 0.7 89.72 ? CA Z89 202 A 1 HETATM 5 C CB Z89 . . . E 3 3.871 -28.166 19.806 0.7 89.88 ? CB Z89 202 A 1 HETATM 6 C CG Z89 . . . E 3 3.364 -29.546 20.269 0.7 90.42 ? CG Z89 202 A 1 HETATM 7 C CAA Z89 . . . E 3 4.582 -21.301 19.077 0.7 89.59 ? CAA Z89 202 A 1 HETATM 8 C CAB Z89 . . . E 3 4.55 -22.688 19.184 0.7 89.79 ? CAB Z89 202 A 1 HETATM 9 C CAC Z89 . . . E 3 3.432 -23.401 19.62 0.7 89.52 ? CAC Z89 202 A 1 HETATM 10 C CAD Z89 . . . E 3 2.293 -22.713 19.97 0.7 89.45 ? CAD Z89 202 A 1 HETATM 11 BR BRAE Z89 . . . E 3 0.742 -23.608 20.581 0.7 89.96 ? BRAE Z89 202 A 1 HETATM 12 C CAF Z89 . . . E 3 2.304 -21.34 19.872 0.7 89.49 ? CAF Z89 202 A 1 HETATM 13 C CAG Z89 . . . E 3 3.43 -20.643 19.442 0.7 89.59 ? CAG Z89 202 A 1 HETATM 14 C CAH Z89 . . . E 3 5.782 -23.097 18.768 0.7 89.46 ? CAH Z89 202 A 1 HETATM 15 C CAI Z89 . . . E 3 6.508 -21.964 18.436 0.7 89.41 ? CAI Z89 202 A 1 HETATM 16 N NAJ Z89 . . . E 3 5.794 -20.862 18.616 0.7 89.37 ? NAJ Z89 202 A 1 HETATM 17 O OAK Z89 . . . E 3 7.699 -21.881 18.009 0.7 89.38 ? OAK Z89 202 A 1 HETATM 18 C CAL Z89 . . . E 3 6.155 -24.431 18.744 0.7 89.48 ? CAL Z89 202 A 1 HETATM 19 C CAM Z89 . . . E 3 5.349 -25.536 19.119 0.7 89.78 ? CAM Z89 202 A 1 HETATM 20 C CAW Z89 . . . E 3 7.169 -26.496 18.535 0.7 89.91 ? CAW Z89 202 A 1 HETATM 21 S SAX Z89 . . . E 3 8.285 -27.822 18.22 0.7 90.68 ? SAX Z89 202 A 1 HETATM 22 S SAY Z89 . . . E 3 7.741 -24.867 18.21 0.7 90.32 ? SAY Z89 202 A 1 HETATM 23 O OAZ Z89 . . . E 3 4.126 -25.458 19.536 0.7 89.74 ? OAZ Z89 202 A 1 HETATM 24 O OD1 Z89 . . . E 3 2.958 -29.71 21.464 0.7 90.09 ? OD1 Z89 202 A 1 HETATM 25 O OD2 Z89 . . . E 3 3.352 -30.51 19.449 0.7 88.12 ? OD2 Z89 202 A 1 HETATM 26 O OXT Z89 . . . E 3 6.495 -29.846 20.61 0.7 89.7 ? OXT Z89 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #