data_3LC2
#
_model_server_result.job_id            4dp4Psx2Pk7965cTFaddWQ 
_model_server_result.datetime_utc      '2024-11-01 13:38:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lc2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":339}' 
#
_entry.id    3LC2 
#
_exptl.entry_id    3LC2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.4 
_cell.angle_gamma         90 
_cell.entry_id            3LC2 
_cell.length_a            69.057 
_cell.length_b            103.025 
_cell.length_c            90.303 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LC2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 151 O CYS 151 1_555 E C1 G3H . O G3H 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? 
covale ? covale2 B SG CYS 151 Q CYS 151 1_555 H C1 G3H . Q G3H 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? 
covale ? covale3 C SG CYS 151 R CYS 151 1_555 K C1 G3H . R G3H 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? 
covale ? covale4 D SG CYS 151 P CYS 151 1_555 N C1 G3H . P G3H 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 145 n n 
C1 C2 GOL sing 146 n n 
C1 H11 GOL sing 147 n n 
C1 H12 GOL sing 148 n n 
O1 HO1 GOL sing 149 n n 
C2 O2 GOL sing 150 n n 
C2 C3 GOL sing 151 n n 
C2 H2 GOL sing 152 n n 
O2 HO2 GOL sing 153 n n 
C3 O3 GOL sing 154 n n 
C3 H31 GOL sing 155 n n 
C3 H32 GOL sing 156 n n 
O3 HO3 GOL sing 157 n n 
#
_atom_sites.entry_id                     3LC2 
_atom_sites.fract_transf_matrix[1][1]    0.014481 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005099 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01174 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 G3H O 1 337 337 G3H G3H . 
F 3 CL O 1 338 338 CL CL . 
G 4 GOL O 1 339 339 GOL GOL . 
H 2 G3H Q 1 337 337 G3H G3H . 
I 3 CL Q 1 338 338 CL CL . 
J 4 GOL Q 1 339 339 GOL GOL . 
K 2 G3H R 1 337 337 G3H G3H . 
L 3 CL R 1 338 338 CL CL . 
M 4 GOL R 1 339 339 GOL GOL . 
N 2 G3H P 1 337 337 G3H G3H . 
O 5 HOH O 1 340 340 HOH HOH . 
O 5 HOH O 2 341 341 HOH HOH . 
O 5 HOH O 3 342 342 HOH HOH . 
O 5 HOH O 4 343 343 HOH HOH . 
O 5 HOH O 5 344 344 HOH HOH . 
O 5 HOH O 6 345 345 HOH HOH . 
O 5 HOH O 7 346 346 HOH HOH . 
O 5 HOH O 8 347 347 HOH HOH . 
O 5 HOH O 9 348 348 HOH HOH . 
O 5 HOH O 10 349 349 HOH HOH . 
O 5 HOH O 11 350 350 HOH HOH . 
O 5 HOH O 12 351 351 HOH HOH . 
O 5 HOH O 13 352 352 HOH HOH . 
O 5 HOH O 14 353 353 HOH HOH . 
O 5 HOH O 15 354 354 HOH HOH . 
O 5 HOH O 16 355 355 HOH HOH . 
O 5 HOH O 17 356 356 HOH HOH . 
O 5 HOH O 18 357 357 HOH HOH . 
O 5 HOH O 19 358 358 HOH HOH . 
O 5 HOH O 20 359 359 HOH HOH . 
O 5 HOH O 21 360 360 HOH HOH . 
O 5 HOH O 22 361 361 HOH HOH . 
O 5 HOH O 23 362 362 HOH HOH . 
O 5 HOH O 24 363 363 HOH HOH . 
O 5 HOH O 25 364 364 HOH HOH . 
O 5 HOH O 26 365 365 HOH HOH . 
O 5 HOH O 27 366 366 HOH HOH . 
O 5 HOH O 28 367 367 HOH HOH . 
O 5 HOH O 29 368 368 HOH HOH . 
O 5 HOH O 30 369 369 HOH HOH . 
O 5 HOH O 31 370 370 HOH HOH . 
O 5 HOH O 32 371 371 HOH HOH . 
O 5 HOH O 33 372 372 HOH HOH . 
O 5 HOH O 34 373 373 HOH HOH . 
O 5 HOH O 35 374 374 HOH HOH . 
O 5 HOH O 36 375 375 HOH HOH . 
O 5 HOH O 37 376 376 HOH HOH . 
O 5 HOH O 38 377 377 HOH HOH . 
O 5 HOH O 39 378 378 HOH HOH . 
O 5 HOH O 40 379 379 HOH HOH . 
O 5 HOH O 41 380 380 HOH HOH . 
P 5 HOH Q 1 340 340 HOH HOH . 
P 5 HOH Q 2 341 341 HOH HOH . 
P 5 HOH Q 3 342 342 HOH HOH . 
P 5 HOH Q 4 343 343 HOH HOH . 
P 5 HOH Q 5 344 344 HOH HOH . 
P 5 HOH Q 6 345 345 HOH HOH . 
P 5 HOH Q 7 346 346 HOH HOH . 
P 5 HOH Q 8 347 347 HOH HOH . 
P 5 HOH Q 9 348 348 HOH HOH . 
P 5 HOH Q 10 349 349 HOH HOH . 
P 5 HOH Q 11 350 350 HOH HOH . 
P 5 HOH Q 12 351 351 HOH HOH . 
P 5 HOH Q 13 352 352 HOH HOH . 
P 5 HOH Q 14 353 353 HOH HOH . 
P 5 HOH Q 15 354 354 HOH HOH . 
P 5 HOH Q 16 355 355 HOH HOH . 
P 5 HOH Q 17 356 356 HOH HOH . 
P 5 HOH Q 18 357 357 HOH HOH . 
P 5 HOH Q 19 358 358 HOH HOH . 
P 5 HOH Q 20 359 359 HOH HOH . 
P 5 HOH Q 21 360 360 HOH HOH . 
P 5 HOH Q 22 361 361 HOH HOH . 
P 5 HOH Q 23 362 362 HOH HOH . 
P 5 HOH Q 24 363 363 HOH HOH . 
P 5 HOH Q 25 364 364 HOH HOH . 
P 5 HOH Q 26 365 365 HOH HOH . 
P 5 HOH Q 27 366 366 HOH HOH . 
P 5 HOH Q 28 367 367 HOH HOH . 
P 5 HOH Q 29 368 368 HOH HOH . 
P 5 HOH Q 30 369 369 HOH HOH . 
P 5 HOH Q 31 370 370 HOH HOH . 
P 5 HOH Q 32 371 371 HOH HOH . 
Q 5 HOH R 1 340 340 HOH HOH . 
Q 5 HOH R 2 341 341 HOH HOH . 
Q 5 HOH R 3 342 342 HOH HOH . 
Q 5 HOH R 4 343 343 HOH HOH . 
Q 5 HOH R 5 344 344 HOH HOH . 
Q 5 HOH R 6 345 345 HOH HOH . 
Q 5 HOH R 7 346 346 HOH HOH . 
Q 5 HOH R 8 347 347 HOH HOH . 
Q 5 HOH R 9 348 348 HOH HOH . 
Q 5 HOH R 10 349 349 HOH HOH . 
Q 5 HOH R 11 350 350 HOH HOH . 
Q 5 HOH R 12 351 351 HOH HOH . 
Q 5 HOH R 13 352 352 HOH HOH . 
Q 5 HOH R 14 353 353 HOH HOH . 
Q 5 HOH R 15 354 354 HOH HOH . 
Q 5 HOH R 16 355 355 HOH HOH . 
Q 5 HOH R 17 356 356 HOH HOH . 
Q 5 HOH R 18 357 357 HOH HOH . 
Q 5 HOH R 19 358 358 HOH HOH . 
Q 5 HOH R 20 359 359 HOH HOH . 
Q 5 HOH R 21 360 360 HOH HOH . 
Q 5 HOH R 22 361 361 HOH HOH . 
Q 5 HOH R 23 362 362 HOH HOH . 
Q 5 HOH R 24 363 363 HOH HOH . 
Q 5 HOH R 25 364 364 HOH HOH . 
Q 5 HOH R 26 365 365 HOH HOH . 
Q 5 HOH R 27 366 366 HOH HOH . 
Q 5 HOH R 28 367 367 HOH HOH . 
Q 5 HOH R 29 368 368 HOH HOH . 
Q 5 HOH R 30 369 369 HOH HOH . 
Q 5 HOH R 31 370 370 HOH HOH . 
Q 5 HOH R 32 371 371 HOH HOH . 
Q 5 HOH R 33 372 372 HOH HOH . 
Q 5 HOH R 34 373 373 HOH HOH . 
Q 5 HOH R 35 374 374 HOH HOH . 
Q 5 HOH R 36 375 375 HOH HOH . 
Q 5 HOH R 37 376 376 HOH HOH . 
Q 5 HOH R 38 377 377 HOH HOH . 
Q 5 HOH R 39 378 378 HOH HOH . 
Q 5 HOH R 40 379 379 HOH HOH . 
Q 5 HOH R 41 380 380 HOH HOH . 
R 5 HOH P 1 338 338 HOH HOH . 
R 5 HOH P 2 339 339 HOH HOH . 
R 5 HOH P 3 340 340 HOH HOH . 
R 5 HOH P 4 341 341 HOH HOH . 
R 5 HOH P 5 342 342 HOH HOH . 
R 5 HOH P 6 343 343 HOH HOH . 
R 5 HOH P 7 344 344 HOH HOH . 
R 5 HOH P 8 345 345 HOH HOH . 
R 5 HOH P 9 346 346 HOH HOH . 
R 5 HOH P 10 347 347 HOH HOH . 
R 5 HOH P 11 348 348 HOH HOH . 
R 5 HOH P 12 349 349 HOH HOH . 
R 5 HOH P 13 350 350 HOH HOH . 
R 5 HOH P 14 351 351 HOH HOH . 
R 5 HOH P 15 352 352 HOH HOH . 
R 5 HOH P 16 353 353 HOH HOH . 
R 5 HOH P 17 354 354 HOH HOH . 
R 5 HOH P 18 355 355 HOH HOH . 
R 5 HOH P 19 356 356 HOH HOH . 
R 5 HOH P 20 357 357 HOH HOH . 
R 5 HOH P 21 358 358 HOH HOH . 
R 5 HOH P 22 359 359 HOH HOH . 
R 5 HOH P 23 360 360 HOH HOH . 
R 5 HOH P 24 361 361 HOH HOH . 
R 5 HOH P 25 362 362 HOH HOH . 
R 5 HOH P 26 363 363 HOH HOH . 
R 5 HOH P 27 364 364 HOH HOH . 
R 5 HOH P 28 365 365 HOH HOH . 
R 5 HOH P 29 366 366 HOH HOH . 
R 5 HOH P 30 367 367 HOH HOH . 
R 5 HOH P 31 368 368 HOH HOH . 
R 5 HOH P 32 369 369 HOH HOH . 
R 5 HOH P 33 370 370 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 16.359 3.336 13.524 1 35.59 ? C1 GOL 339 O 1 
HETATM 2 O O1 GOL . . . G 4 17.671 3.249 13.022 1 24.65 ? O1 GOL 339 O 1 
HETATM 3 C C2 GOL . . . G 4 16.388 3.885 14.958 1 36.07 ? C2 GOL 339 O 1 
HETATM 4 O O2 GOL . . . G 4 15.344 3.356 15.741 1 38 ? O2 GOL 339 O 1 
HETATM 5 C C3 GOL . . . G 4 16.223 5.395 14.922 1 40.84 ? C3 GOL 339 O 1 
HETATM 6 O O3 GOL . . . G 4 15.005 5.798 15.511 1 43.36 ? O3 GOL 339 O 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#