data_3LC4 # _model_server_result.job_id sCCdyomBxbQE3_SSs11VqQ _model_server_result.datetime_utc '2024-12-18 02:00:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3LC4 # _exptl.entry_id 3LC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.379 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '12-(1H-imidazol-1-yl)dodecanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LC4 _cell.length_a 70.779 _cell.length_b 70.779 _cell.length_c 224.629 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 416 A CYS 437 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc2 C FE HEM . A HEM 500 1_555 D N15 LC4 . A LC4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc3 B SG CYS 416 B CYS 437 1_555 E FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc4 E FE HEM . B HEM 500 1_555 F N15 LC4 . B LC4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? # _chem_comp.formula 'C15 H26 N2 O2' _chem_comp.formula_weight 266.379 _chem_comp.id LC4 _chem_comp.mon_nstd_flag . _chem_comp.name '12-(1H-imidazol-1-yl)dodecanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 LC4 doub 255 n n C2 C3 LC4 sing 256 n n C2 O17 LC4 sing 257 n n O17 HO17 LC4 sing 258 n n C4 C3 LC4 sing 259 n n C3 H3 LC4 sing 260 n n C3 H3A LC4 sing 261 n n C4 C5 LC4 sing 262 n n C4 H4 LC4 sing 263 n n C4 H4A LC4 sing 264 n n C5 C6 LC4 sing 265 n n C5 H5 LC4 sing 266 n n C5 H5A LC4 sing 267 n n C6 C7 LC4 sing 268 n n C6 H6 LC4 sing 269 n n C6 H6A LC4 sing 270 n n C7 C18 LC4 sing 271 n n C7 H7 LC4 sing 272 n n C7 H7A LC4 sing 273 n n C18 C19 LC4 sing 274 n n C18 H18 LC4 sing 275 n n C18 H18A LC4 sing 276 n n C19 C8 LC4 sing 277 n n C19 H19 LC4 sing 278 n n C19 H19A LC4 sing 279 n n C8 C9 LC4 sing 280 n n C8 H8 LC4 sing 281 n n C8 H8A LC4 sing 282 n n C9 C10 LC4 sing 283 n n C9 H9 LC4 sing 284 n n C9 H9A LC4 sing 285 n n C10 C11 LC4 sing 286 n n C10 H10 LC4 sing 287 n n C10 H10A LC4 sing 288 n n C11 N12 LC4 sing 289 n n C11 H11 LC4 sing 290 n n C11 H11A LC4 sing 291 n n N12 C13 LC4 sing 292 n y N12 C16 LC4 sing 293 n y C13 C14 LC4 doub 294 n y C13 H13 LC4 sing 295 n n C14 N15 LC4 sing 296 n y C14 H14 LC4 sing 297 n n C16 N15 LC4 doub 298 n y C16 H16 LC4 sing 299 n n # _atom_sites.entry_id 3LC4 _atom_sites.fract_transf_matrix[1][1] 0.014129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 500 500 HEM HEM . D 3 LC4 A 1 501 501 LC4 UNK . E 2 HEM B 1 500 500 HEM HEM . F 3 LC4 B 1 501 501 LC4 UNK . G 4 HOH A 1 1 1 HOH HOH . G 4 HOH A 2 2 2 HOH HOH . H 4 HOH B 1 3 3 HOH HOH . H 4 HOH B 2 4 4 HOH HOH . H 4 HOH B 3 5 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 LC4 . . . D 3 6.812 -13.583 19.711 1 59.04 ? O1 LC4 501 A 1 HETATM 2 C C2 LC4 . . . D 3 6.668 -12.954 18.643 1 58.06 ? C2 LC4 501 A 1 HETATM 3 O O17 LC4 . . . D 3 7.34 -13.316 17.649 1 58.31 ? O17 LC4 501 A 1 HETATM 4 C C3 LC4 . . . D 3 5.658 -11.793 18.524 1 56.1 ? C3 LC4 501 A 1 HETATM 5 C C4 LC4 . . . D 3 5.834 -10.573 19.439 1 52.78 ? C4 LC4 501 A 1 HETATM 6 C C5 LC4 . . . D 3 6.096 -9.299 18.635 1 51.27 ? C5 LC4 501 A 1 HETATM 7 C C6 LC4 . . . D 3 4.914 -8.329 18.545 1 50.7 ? C6 LC4 501 A 1 HETATM 8 C C7 LC4 . . . D 3 5.368 -6.97 17.996 1 50.08 ? C7 LC4 501 A 1 HETATM 9 C C18 LC4 . . . D 3 4.36 -6.241 17.103 1 49.66 ? C18 LC4 501 A 1 HETATM 10 C C19 LC4 . . . D 3 5.009 -5.113 16.283 1 49.59 ? C19 LC4 501 A 1 HETATM 11 C C8 LC4 . . . D 3 4.053 -4.383 15.323 1 49.17 ? C8 LC4 501 A 1 HETATM 12 C C9 LC4 . . . D 3 4.348 -4.695 13.852 1 49.47 ? C9 LC4 501 A 1 HETATM 13 C C10 LC4 . . . D 3 4.285 -3.504 12.888 1 50.34 ? C10 LC4 501 A 1 HETATM 14 C C11 LC4 . . . D 3 5.336 -3.565 11.759 1 52.1 ? C11 LC4 501 A 1 HETATM 15 N N12 LC4 . . . D 3 4.975 -4.473 10.651 1 52.64 ? N12 LC4 501 A 1 HETATM 16 C C13 LC4 . . . D 3 5.119 -5.811 10.646 1 51.97 ? C13 LC4 501 A 1 HETATM 17 C C14 LC4 . . . D 3 4.657 -6.296 9.45 1 50.95 ? C14 LC4 501 A 1 HETATM 18 N N15 LC4 . . . D 3 4.243 -5.231 8.745 1 51.89 ? N15 LC4 501 A 1 HETATM 19 C C16 LC4 . . . D 3 4.444 -4.113 9.478 1 52.06 ? C16 LC4 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 517 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #