data_3LC4
#
_model_server_result.job_id            Myih8S71-DdHmK0IQanHcg 
_model_server_result.datetime_utc      '2024-10-17 18:24:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lc4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    3LC4 
#
_exptl.entry_id    3LC4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              266.379 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '12-(1H-imidazol-1-yl)dodecanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LC4 
_cell.length_a            70.779 
_cell.length_b            70.779 
_cell.length_c            224.629 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LC4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 416 A CYS 437 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc2 C FE HEM . A HEM 500 1_555 D N15 LC4 . A LC4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc3 B SG CYS 416 B CYS 437 1_555 E FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc4 E FE HEM . B HEM 500 1_555 F N15 LC4 . B LC4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
#
_chem_comp.formula           'C15 H26 N2 O2' 
_chem_comp.formula_weight    266.379 
_chem_comp.id                LC4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '12-(1H-imidazol-1-yl)dodecanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 LC4 doub 255 n n 
C2 C3 LC4 sing 256 n n 
C2 O17 LC4 sing 257 n n 
O17 HO17 LC4 sing 258 n n 
C4 C3 LC4 sing 259 n n 
C3 H3 LC4 sing 260 n n 
C3 H3A LC4 sing 261 n n 
C4 C5 LC4 sing 262 n n 
C4 H4 LC4 sing 263 n n 
C4 H4A LC4 sing 264 n n 
C5 C6 LC4 sing 265 n n 
C5 H5 LC4 sing 266 n n 
C5 H5A LC4 sing 267 n n 
C6 C7 LC4 sing 268 n n 
C6 H6 LC4 sing 269 n n 
C6 H6A LC4 sing 270 n n 
C7 C18 LC4 sing 271 n n 
C7 H7 LC4 sing 272 n n 
C7 H7A LC4 sing 273 n n 
C18 C19 LC4 sing 274 n n 
C18 H18 LC4 sing 275 n n 
C18 H18A LC4 sing 276 n n 
C19 C8 LC4 sing 277 n n 
C19 H19 LC4 sing 278 n n 
C19 H19A LC4 sing 279 n n 
C8 C9 LC4 sing 280 n n 
C8 H8 LC4 sing 281 n n 
C8 H8A LC4 sing 282 n n 
C9 C10 LC4 sing 283 n n 
C9 H9 LC4 sing 284 n n 
C9 H9A LC4 sing 285 n n 
C10 C11 LC4 sing 286 n n 
C10 H10 LC4 sing 287 n n 
C10 H10A LC4 sing 288 n n 
C11 N12 LC4 sing 289 n n 
C11 H11 LC4 sing 290 n n 
C11 H11A LC4 sing 291 n n 
N12 C13 LC4 sing 292 n y 
N12 C16 LC4 sing 293 n y 
C13 C14 LC4 doub 294 n y 
C13 H13 LC4 sing 295 n n 
C14 N15 LC4 sing 296 n y 
C14 H14 LC4 sing 297 n n 
C16 N15 LC4 doub 298 n y 
C16 H16 LC4 sing 299 n n 
#
_atom_sites.entry_id                     3LC4 
_atom_sites.fract_transf_matrix[1][1]    0.014129 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014129 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004452 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 LC4 A 1 501 501 LC4 UNK . 
E 2 HEM B 1 500 500 HEM HEM . 
F 3 LC4 B 1 501 501 LC4 UNK . 
G 4 HOH A 1 1 1 HOH HOH . 
G 4 HOH A 2 2 2 HOH HOH . 
H 4 HOH B 1 3 3 HOH HOH . 
H 4 HOH B 2 4 4 HOH HOH . 
H 4 HOH B 3 5 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 LC4 . . . F 3 -21.45 -42.11 26.166 1 61.92 ? O1 LC4 501 B 1 
HETATM 2 C C2 LC4 . . . F 3 -22.31 -42.19 27.076 1 60.74 ? C2 LC4 501 B 1 
HETATM 3 O O17 LC4 . . . F 3 -22.263 -43.168 27.87 1 61.54 ? O17 LC4 501 B 1 
HETATM 4 C C3 LC4 . . . F 3 -23.382 -41.095 27.252 1 57.81 ? C3 LC4 501 B 1 
HETATM 5 C C4 LC4 . . . F 3 -24.529 -41.027 26.242 1 53.09 ? C4 LC4 501 B 1 
HETATM 6 C C5 LC4 . . . F 3 -25.822 -41.54 26.862 1 51.35 ? C5 LC4 501 B 1 
HETATM 7 C C6 LC4 . . . F 3 -26.899 -40.471 27.043 1 52.03 ? C6 LC4 501 B 1 
HETATM 8 C C7 LC4 . . . F 3 -28.057 -41.005 27.898 1 52.27 ? C7 LC4 501 B 1 
HETATM 9 C C18 LC4 . . . F 3 -29.11 -39.976 28.332 1 51.92 ? C18 LC4 501 B 1 
HETATM 10 C C19 LC4 . . . F 3 -29.923 -40.502 29.529 1 51.76 ? C19 LC4 501 B 1 
HETATM 11 C C8 LC4 . . . F 3 -30.767 -39.449 30.268 1 51.37 ? C8 LC4 501 B 1 
HETATM 12 C C9 LC4 . . . F 3 -30.48 -39.424 31.772 1 51.64 ? C9 LC4 501 B 1 
HETATM 13 C C10 LC4 . . . F 3 -31.693 -39.508 32.707 1 52 ? C10 LC4 501 B 1 
HETATM 14 C C11 LC4 . . . F 3 -31.557 -40.585 33.803 1 52.9 ? C11 LC4 501 B 1 
HETATM 15 N N12 LC4 . . . F 3 -30.779 -40.247 35.02 1 52.95 ? N12 LC4 501 B 1 
HETATM 16 C C13 LC4 . . . F 3 -29.682 -39.471 35.101 1 52.62 ? C13 LC4 501 B 1 
HETATM 17 C C14 LC4 . . . F 3 -29.269 -39.424 36.412 1 51.26 ? C14 LC4 501 B 1 
HETATM 18 N N15 LC4 . . . F 3 -30.125 -40.19 37.107 1 51.15 ? N15 LC4 501 B 1 
HETATM 19 C C16 LC4 . . . F 3 -31.044 -40.697 36.258 1 51.77 ? C16 LC4 501 B 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           19 
#