data_3LC7 # _model_server_result.job_id KhEF_lYnN24IdRabZsMhcA _model_server_result.datetime_utc '2024-11-01 15:37:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":337}' # _entry.id 3LC7 # _exptl.entry_id 3LC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.73 _cell.angle_gamma 90 _cell.entry_id 3LC7 _cell.length_a 64.288 _cell.length_b 94.937 _cell.length_c 86.552 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3LC7 _atom_sites.fract_transf_matrix[1][1] 0.015555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004381 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL O 1 337 1 GOL GOL . F 2 GOL Q 1 337 1 GOL GOL . G 3 HOH O 1 338 2 HOH HOH . G 3 HOH O 2 339 3 HOH HOH . G 3 HOH O 3 340 19 HOH HOH . G 3 HOH O 4 341 23 HOH HOH . G 3 HOH O 5 342 27 HOH HOH . G 3 HOH O 6 343 40 HOH HOH . G 3 HOH O 7 344 42 HOH HOH . G 3 HOH O 8 345 43 HOH HOH . G 3 HOH O 9 346 44 HOH HOH . G 3 HOH O 10 347 46 HOH HOH . G 3 HOH O 11 348 51 HOH HOH . G 3 HOH O 12 349 53 HOH HOH . G 3 HOH O 13 350 55 HOH HOH . G 3 HOH O 14 351 58 HOH HOH . G 3 HOH O 15 352 61 HOH HOH . G 3 HOH O 16 353 65 HOH HOH . G 3 HOH O 17 354 69 HOH HOH . G 3 HOH O 18 355 71 HOH HOH . G 3 HOH O 19 356 75 HOH HOH . G 3 HOH O 20 357 82 HOH HOH . G 3 HOH O 21 358 85 HOH HOH . G 3 HOH O 22 359 86 HOH HOH . G 3 HOH O 23 360 94 HOH HOH . G 3 HOH O 24 361 95 HOH HOH . G 3 HOH O 25 362 101 HOH HOH . G 3 HOH O 26 363 111 HOH HOH . G 3 HOH O 27 364 117 HOH HOH . G 3 HOH O 28 365 121 HOH HOH . G 3 HOH O 29 366 129 HOH HOH . G 3 HOH O 30 367 136 HOH HOH . G 3 HOH O 31 368 137 HOH HOH . G 3 HOH O 32 369 139 HOH HOH . G 3 HOH O 33 370 143 HOH HOH . G 3 HOH O 34 371 151 HOH HOH . H 3 HOH R 1 337 7 HOH HOH . H 3 HOH R 2 338 8 HOH HOH . H 3 HOH R 3 339 12 HOH HOH . H 3 HOH R 4 340 15 HOH HOH . H 3 HOH R 5 341 16 HOH HOH . H 3 HOH R 6 342 18 HOH HOH . H 3 HOH R 7 343 29 HOH HOH . H 3 HOH R 8 344 30 HOH HOH . H 3 HOH R 9 345 34 HOH HOH . H 3 HOH R 10 346 36 HOH HOH . H 3 HOH R 11 347 39 HOH HOH . H 3 HOH R 12 348 48 HOH HOH . H 3 HOH R 13 349 49 HOH HOH . H 3 HOH R 14 350 50 HOH HOH . H 3 HOH R 15 351 56 HOH HOH . H 3 HOH R 16 352 57 HOH HOH . H 3 HOH R 17 353 59 HOH HOH . H 3 HOH R 18 354 62 HOH HOH . H 3 HOH R 19 355 66 HOH HOH . H 3 HOH R 20 356 72 HOH HOH . H 3 HOH R 21 357 77 HOH HOH . H 3 HOH R 22 358 78 HOH HOH . H 3 HOH R 23 359 79 HOH HOH . H 3 HOH R 24 360 87 HOH HOH . H 3 HOH R 25 361 89 HOH HOH . H 3 HOH R 26 362 91 HOH HOH . H 3 HOH R 27 363 92 HOH HOH . H 3 HOH R 28 364 98 HOH HOH . H 3 HOH R 29 365 106 HOH HOH . H 3 HOH R 30 366 107 HOH HOH . H 3 HOH R 31 367 108 HOH HOH . H 3 HOH R 32 368 110 HOH HOH . H 3 HOH R 33 369 115 HOH HOH . H 3 HOH R 34 370 116 HOH HOH . H 3 HOH R 35 371 120 HOH HOH . H 3 HOH R 36 372 123 HOH HOH . H 3 HOH R 37 373 130 HOH HOH . H 3 HOH R 38 374 135 HOH HOH . H 3 HOH R 39 375 140 HOH HOH . H 3 HOH R 40 376 141 HOH HOH . H 3 HOH R 41 377 142 HOH HOH . H 3 HOH R 42 378 145 HOH HOH . H 3 HOH R 43 379 150 HOH HOH . I 3 HOH Q 1 338 6 HOH HOH . I 3 HOH Q 2 339 10 HOH HOH . I 3 HOH Q 3 340 11 HOH HOH . I 3 HOH Q 4 341 13 HOH HOH . I 3 HOH Q 5 342 17 HOH HOH . I 3 HOH Q 6 343 22 HOH HOH . I 3 HOH Q 7 344 25 HOH HOH . I 3 HOH Q 8 345 28 HOH HOH . I 3 HOH Q 9 346 41 HOH HOH . I 3 HOH Q 10 347 45 HOH HOH . I 3 HOH Q 11 348 52 HOH HOH . I 3 HOH Q 12 349 60 HOH HOH . I 3 HOH Q 13 350 64 HOH HOH . I 3 HOH Q 14 351 70 HOH HOH . I 3 HOH Q 15 352 73 HOH HOH . I 3 HOH Q 16 353 76 HOH HOH . I 3 HOH Q 17 354 80 HOH HOH . I 3 HOH Q 18 355 83 HOH HOH . I 3 HOH Q 19 356 88 HOH HOH . I 3 HOH Q 20 357 93 HOH HOH . I 3 HOH Q 21 358 100 HOH HOH . I 3 HOH Q 22 359 103 HOH HOH . I 3 HOH Q 23 360 113 HOH HOH . I 3 HOH Q 24 361 118 HOH HOH . I 3 HOH Q 25 362 122 HOH HOH . I 3 HOH Q 26 363 127 HOH HOH . I 3 HOH Q 27 364 128 HOH HOH . I 3 HOH Q 28 365 132 HOH HOH . I 3 HOH Q 29 366 146 HOH HOH . J 3 HOH P 1 337 5 HOH HOH . J 3 HOH P 2 338 20 HOH HOH . J 3 HOH P 3 339 32 HOH HOH . J 3 HOH P 4 340 33 HOH HOH . J 3 HOH P 5 341 35 HOH HOH . J 3 HOH P 6 342 37 HOH HOH . J 3 HOH P 7 343 38 HOH HOH . J 3 HOH P 8 344 47 HOH HOH . J 3 HOH P 9 345 54 HOH HOH . J 3 HOH P 10 346 63 HOH HOH . J 3 HOH P 11 347 67 HOH HOH . J 3 HOH P 12 348 68 HOH HOH . J 3 HOH P 13 349 74 HOH HOH . J 3 HOH P 14 350 81 HOH HOH . J 3 HOH P 15 351 90 HOH HOH . J 3 HOH P 16 352 97 HOH HOH . J 3 HOH P 17 353 99 HOH HOH . J 3 HOH P 18 354 104 HOH HOH . J 3 HOH P 19 355 105 HOH HOH . J 3 HOH P 20 356 114 HOH HOH . J 3 HOH P 21 357 119 HOH HOH . J 3 HOH P 22 358 124 HOH HOH . J 3 HOH P 23 359 125 HOH HOH . J 3 HOH P 24 360 131 HOH HOH . J 3 HOH P 25 361 134 HOH HOH . J 3 HOH P 26 362 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 25.908 -30.838 29.926 1 46.85 ? C1 GOL 337 Q 1 HETATM 2 O O1 GOL . . . F 2 26.927 -31.064 28.975 1 47.6 ? O1 GOL 337 Q 1 HETATM 3 C C2 GOL . . . F 2 25.567 -29.358 29.974 1 38.74 ? C2 GOL 337 Q 1 HETATM 4 O O2 GOL . . . F 2 25.283 -28.917 28.671 1 36.94 ? O2 GOL 337 Q 1 HETATM 5 C C3 GOL . . . F 2 26.79 -28.608 30.495 1 36.47 ? C3 GOL 337 Q 1 HETATM 6 O O3 GOL . . . F 2 26.435 -28.049 31.712 1 32.23 ? O3 GOL 337 Q 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #