data_3LCB # _model_server_result.job_id jsnaqKrv3lPASt7S3wcJ1A _model_server_result.datetime_utc '2024-11-09 02:30:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":579}' # _entry.id 3LCB # _exptl.entry_id 3LCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LCB _cell.length_a 196.801 _cell.length_b 196.801 _cell.length_c 156.458 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dodecameric 12 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,K 1 1 D,N 1 2 B,C,H,I,J,L,M 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1,3,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 462 A ASN 462 1_555 G MG MG . A MG 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc2 A OD2 ASP 475 A ASP 475 1_555 G MG MG . A MG 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc3 A OD1 ASP 475 A ASP 475 1_555 G MG MG . A MG 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc4 G MG MG . A MG 579 1_555 F O1A ATP . A ATP 1760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc5 G MG MG . A MG 579 1_555 F O1G ATP . A ATP 1760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc6 G MG MG . A MG 579 1_555 F O1B ATP . A ATP 1760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc7 G MG MG . A MG 579 1_555 F O3B ATP . A ATP 1760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc8 B OD1 ASN 462 B ASN 462 1_555 J MG MG . B MG 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc9 J MG MG . B MG 579 1_555 H O1B ATP . B ATP 1761 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc10 J MG MG . B MG 579 1_555 H O3A ATP . B ATP 1761 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc11 J MG MG . B MG 579 1_555 H O2B ATP . B ATP 1761 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc12 J MG MG . B MG 579 1_555 H O5' ATP . B ATP 1761 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc13 J MG MG . B MG 579 1_555 H O2A ATP . B ATP 1761 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LCB _atom_sites.fract_transf_matrix[1][1] 0.005081 _atom_sites.fract_transf_matrix[1][2] 0.002934 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AMP A 1 1604 1604 AMP AMP . F 4 ATP A 1 1760 1760 ATP ATP . G 5 MG A 1 579 1 MG MG . H 4 ATP B 1 1761 1761 ATP ATP . I 3 AMP B 1 1604 1604 AMP AMP . J 5 MG B 1 579 1 MG MG . K 6 HOH A 1 580 8 HOH HOH . K 6 HOH A 2 581 15 HOH HOH . K 6 HOH A 3 582 20 HOH HOH . L 6 HOH B 1 580 7 HOH HOH . L 6 HOH B 2 581 9 HOH HOH . L 6 HOH B 3 582 13 HOH HOH . L 6 HOH B 4 583 19 HOH HOH . L 6 HOH B 5 584 21 HOH HOH . M 6 HOH C 1 417 1 HOH HOH . M 6 HOH C 2 418 3 HOH HOH . M 6 HOH C 3 419 6 HOH HOH . M 6 HOH C 4 420 12 HOH HOH . M 6 HOH C 5 421 14 HOH HOH . N 6 HOH D 1 417 2 HOH HOH . N 6 HOH D 2 418 4 HOH HOH . N 6 HOH D 3 419 5 HOH HOH . N 6 HOH D 4 420 10 HOH HOH . N 6 HOH D 5 421 11 HOH HOH . N 6 HOH D 6 422 16 HOH HOH . N 6 HOH D 7 423 17 HOH HOH . N 6 HOH D 8 424 18 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x -67.66 _atom_site.Cartn_y -7.99 _atom_site.Cartn_z -18.937 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 72.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 579 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #