data_3LCJ # _model_server_result.job_id WOQJdkSHd9YL01GvUuOXMQ _model_server_result.datetime_utc '2024-10-19 11:42:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lcj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":162}' # _entry.id 3LCJ # _exptl.entry_id 3LCJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LCJ _cell.length_a 98.839 _cell.length_b 98.839 _cell.length_c 112.884 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LCJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 3LCJ _atom_sites.fract_transf_matrix[1][1] 0.010117 _atom_sites.fract_transf_matrix[1][2] 0.005841 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 162 1 COA COA . C 3 HOH A 1 163 1 HOH HOH . C 3 HOH A 2 164 2 HOH HOH . C 3 HOH A 3 165 3 HOH HOH . C 3 HOH A 4 166 4 HOH HOH . C 3 HOH A 5 167 6 HOH HOH . C 3 HOH A 6 168 7 HOH HOH . C 3 HOH A 7 169 8 HOH HOH . C 3 HOH A 8 170 9 HOH HOH . C 3 HOH A 9 171 11 HOH HOH . C 3 HOH A 10 172 12 HOH HOH . C 3 HOH A 11 173 13 HOH HOH . C 3 HOH A 12 174 14 HOH HOH . C 3 HOH A 13 175 15 HOH HOH . C 3 HOH A 14 176 16 HOH HOH . C 3 HOH A 15 177 17 HOH HOH . C 3 HOH A 16 178 18 HOH HOH . C 3 HOH A 17 179 19 HOH HOH . C 3 HOH A 18 180 20 HOH HOH . C 3 HOH A 19 181 21 HOH HOH . C 3 HOH A 20 182 22 HOH HOH . C 3 HOH A 21 183 23 HOH HOH . C 3 HOH A 22 184 24 HOH HOH . C 3 HOH A 23 185 1 HOH HOH . C 3 HOH A 24 186 2 HOH HOH . C 3 HOH A 25 187 1 HOH HOH . C 3 HOH A 26 188 2 HOH HOH . C 3 HOH A 27 189 3 HOH HOH . C 3 HOH A 28 190 4 HOH HOH . C 3 HOH A 29 191 5 HOH HOH . C 3 HOH A 30 192 6 HOH HOH . C 3 HOH A 31 193 7 HOH HOH . C 3 HOH A 32 194 8 HOH HOH . C 3 HOH A 33 195 9 HOH HOH . C 3 HOH A 34 196 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 4.251 -2.359 19.444 1 59.2 ? N1A COA 162 A 1 HETATM 2 C C2A COA . . . B 2 4.697 -2.508 18.004 1 59.15 ? C2A COA 162 A 1 HETATM 3 N N3A COA . . . B 2 5.973 -2.678 17.746 1 59.13 ? N3A COA 162 A 1 HETATM 4 C C4A COA . . . B 2 6.903 -2.571 18.887 1 59.12 ? C4A COA 162 A 1 HETATM 5 C C5A COA . . . B 2 6.475 -2.342 20.128 1 59.11 ? C5A COA 162 A 1 HETATM 6 C C6A COA . . . B 2 4.967 -2.07 20.404 1 59.11 ? C6A COA 162 A 1 HETATM 7 N N6A COA . . . B 2 4.511 -1.942 21.77 1 59.36 ? N6A COA 162 A 1 HETATM 8 N N7A COA . . . B 2 7.686 -2.277 21.042 1 59.12 ? N7A COA 162 A 1 HETATM 9 C C8A COA . . . B 2 8.771 -2.492 20.31 1 59.08 ? C8A COA 162 A 1 HETATM 10 N N9A COA . . . B 2 8.373 -2.706 18.931 1 59.08 ? N9A COA 162 A 1 HETATM 11 C C1B COA . . . B 2 9.217 -2.938 17.893 1 59.17 ? C1B COA 162 A 1 HETATM 12 C C2B COA . . . B 2 9.917 -3.982 18.043 1 59.3 ? C2B COA 162 A 1 HETATM 13 O O2B COA . . . B 2 10.739 -3.912 19.052 1 59.61 ? O2B COA 162 A 1 HETATM 14 C C3B COA . . . B 2 10.627 -3.971 16.945 1 59.51 ? C3B COA 162 A 1 HETATM 15 O O3B COA . . . B 2 11.056 -5.28 16.692 1 60.98 ? O3B COA 162 A 1 HETATM 16 P P3B COA . . . B 2 10.135 -6.509 17.349 1 61.87 ? P3B COA 162 A 1 HETATM 17 O O7A COA . . . B 2 8.849 -5.996 17.736 1 62.17 ? O7A COA 162 A 1 HETATM 18 O O8A COA . . . B 2 9.916 -7.58 16.07 1 61.33 ? O8A COA 162 A 1 HETATM 19 O O9A COA . . . B 2 10.802 -7.185 18.733 1 62.05 ? O9A COA 162 A 1 HETATM 20 C C4B COA . . . B 2 9.805 -3.468 15.972 1 58.58 ? C4B COA 162 A 1 HETATM 21 O O4B COA . . . B 2 8.642 -3.191 16.676 1 58.96 ? O4B COA 162 A 1 HETATM 22 C C5B COA . . . B 2 9.632 -4.37 14.865 1 57.08 ? C5B COA 162 A 1 HETATM 23 O O5B COA . . . B 2 10.632 -4.158 13.878 1 54.79 ? O5B COA 162 A 1 HETATM 24 P P1A COA . . . B 2 11.692 -2.863 13.985 1 53.31 ? P1A COA 162 A 1 HETATM 25 O O1A COA . . . B 2 12.956 -3.228 13.41 1 53.39 ? O1A COA 162 A 1 HETATM 26 O O2A COA . . . B 2 11.131 -1.574 13.213 1 53.66 ? O2A COA 162 A 1 HETATM 27 O O3A COA . . . B 2 11.954 -2.391 15.521 1 52.67 ? O3A COA 162 A 1 HETATM 28 P P2A COA . . . B 2 13.453 -2.334 16.224 1 51.8 ? P2A COA 162 A 1 HETATM 29 O O4A COA . . . B 2 14.215 -3.527 15.958 1 51.54 ? O4A COA 162 A 1 HETATM 30 O O5A COA . . . B 2 13.03 -2.279 17.782 1 51.51 ? O5A COA 162 A 1 HETATM 31 O O6A COA . . . B 2 14.254 -0.886 15.923 1 51.37 ? O6A COA 162 A 1 HETATM 32 C CBP COA . . . B 2 13.505 1.355 14.896 1 49.16 ? CBP COA 162 A 1 HETATM 33 C CCP COA . . . B 2 14.17 -0.072 14.732 1 50.33 ? CCP COA 162 A 1 HETATM 34 C CDP COA . . . B 2 14.368 2.27 14.042 1 49.76 ? CDP COA 162 A 1 HETATM 35 C CEP COA . . . B 2 12.155 1.528 14.252 1 50.14 ? CEP COA 162 A 1 HETATM 36 C CAP COA . . . B 2 13.272 1.843 16.355 1 46.94 ? CAP COA 162 A 1 HETATM 37 O OAP COA . . . B 2 12.275 2.766 16.179 1 47.57 ? OAP COA 162 A 1 HETATM 38 C C9P COA . . . B 2 14.521 2.608 16.826 1 44.04 ? C9P COA 162 A 1 HETATM 39 O O9P COA . . . B 2 15.293 2.899 16.04 1 43.1 ? O9P COA 162 A 1 HETATM 40 N N8P COA . . . B 2 14.964 3.012 18.168 1 40.51 ? N8P COA 162 A 1 HETATM 41 C C7P COA . . . B 2 16.233 3.759 18.14 1 36.34 ? C7P COA 162 A 1 HETATM 42 C C6P COA . . . B 2 15.493 5.059 17.718 1 32.27 ? C6P COA 162 A 1 HETATM 43 C C5P COA . . . B 2 15.875 6.322 16.887 1 30.11 ? C5P COA 162 A 1 HETATM 44 O O5P COA . . . B 2 16.877 6.553 16.393 1 26.1 ? O5P COA 162 A 1 HETATM 45 N N4P COA . . . B 2 14.756 7.248 16.755 1 28.73 ? N4P COA 162 A 1 HETATM 46 C C3P COA . . . B 2 14.769 8.481 16.002 1 28.88 ? C3P COA 162 A 1 HETATM 47 C C2P COA . . . B 2 13.659 8.127 15.006 1 29.67 ? C2P COA 162 A 1 HETATM 48 S S1P COA . . . B 2 13.803 8.682 13.296 1 31.42 ? S1P COA 162 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #