data_3LCU # _model_server_result.job_id yXYi1PXdnKG2UX_qbYE_wg _model_server_result.datetime_utc '2024-11-22 18:20:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":6732}' # _entry.id 3LCU # _exptl.entry_id 3LCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.47 _cell.angle_gamma 90 _cell.entry_id 3LCU _cell.length_a 36.087 _cell.length_b 68.891 _cell.length_c 52.201 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 105 A ALA 98 1_555 A N MSE 106 A MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 106 A MSE 99 1_555 A N SER 107 A SER 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C TRP 150 A TRP 143 1_555 A N MSE 151 A MSE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 151 A MSE 144 1_555 A N GLY 152 A GLY 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C GLY 246 A GLY 239 1_555 A N MSE 247 A MSE 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 247 A MSE 240 1_555 A N PHE 248 A PHE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 3LCU _atom_sites.fract_transf_matrix[1][1] 0.027711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00168 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 6732 6732 SAH SAH . C 3 HOH A 1 275 1 HOH TIP . C 3 HOH A 2 276 2 HOH TIP . C 3 HOH A 3 277 3 HOH TIP . C 3 HOH A 4 278 4 HOH TIP . C 3 HOH A 5 279 5 HOH TIP . C 3 HOH A 6 280 6 HOH TIP . C 3 HOH A 7 281 7 HOH TIP . C 3 HOH A 8 282 8 HOH TIP . C 3 HOH A 9 283 9 HOH TIP . C 3 HOH A 10 284 10 HOH TIP . C 3 HOH A 11 285 11 HOH TIP . C 3 HOH A 12 286 12 HOH TIP . C 3 HOH A 13 287 13 HOH TIP . C 3 HOH A 14 288 14 HOH TIP . C 3 HOH A 15 289 15 HOH TIP . C 3 HOH A 16 290 16 HOH TIP . C 3 HOH A 17 291 17 HOH TIP . C 3 HOH A 18 292 18 HOH TIP . C 3 HOH A 19 293 19 HOH TIP . C 3 HOH A 20 294 20 HOH TIP . C 3 HOH A 21 295 21 HOH TIP . C 3 HOH A 22 296 22 HOH TIP . C 3 HOH A 23 297 23 HOH TIP . C 3 HOH A 24 298 24 HOH TIP . C 3 HOH A 25 299 25 HOH TIP . C 3 HOH A 26 300 26 HOH TIP . C 3 HOH A 27 301 27 HOH TIP . C 3 HOH A 28 302 28 HOH TIP . C 3 HOH A 29 303 29 HOH TIP . C 3 HOH A 30 304 30 HOH TIP . C 3 HOH A 31 305 31 HOH TIP . C 3 HOH A 32 306 32 HOH TIP . C 3 HOH A 33 307 33 HOH TIP . C 3 HOH A 34 308 34 HOH TIP . C 3 HOH A 35 309 35 HOH TIP . C 3 HOH A 36 310 36 HOH TIP . C 3 HOH A 37 311 37 HOH TIP . C 3 HOH A 38 312 38 HOH TIP . C 3 HOH A 39 313 39 HOH TIP . C 3 HOH A 40 314 40 HOH TIP . C 3 HOH A 41 315 41 HOH TIP . C 3 HOH A 42 316 42 HOH TIP . C 3 HOH A 43 317 43 HOH TIP . C 3 HOH A 44 318 44 HOH TIP . C 3 HOH A 45 319 45 HOH TIP . C 3 HOH A 46 320 46 HOH TIP . C 3 HOH A 47 321 47 HOH TIP . C 3 HOH A 48 322 48 HOH TIP . C 3 HOH A 49 323 49 HOH TIP . C 3 HOH A 50 324 50 HOH TIP . C 3 HOH A 51 325 51 HOH TIP . C 3 HOH A 52 326 52 HOH TIP . C 3 HOH A 53 327 53 HOH TIP . C 3 HOH A 54 328 54 HOH TIP . C 3 HOH A 55 329 55 HOH TIP . C 3 HOH A 56 330 56 HOH TIP . C 3 HOH A 57 331 57 HOH TIP . C 3 HOH A 58 332 58 HOH TIP . C 3 HOH A 59 333 59 HOH TIP . C 3 HOH A 60 334 60 HOH TIP . C 3 HOH A 61 335 61 HOH TIP . C 3 HOH A 62 336 62 HOH TIP . C 3 HOH A 63 337 63 HOH TIP . C 3 HOH A 64 338 64 HOH TIP . C 3 HOH A 65 339 65 HOH TIP . C 3 HOH A 66 340 66 HOH TIP . C 3 HOH A 67 341 67 HOH TIP . C 3 HOH A 68 342 68 HOH TIP . C 3 HOH A 69 343 69 HOH TIP . C 3 HOH A 70 344 70 HOH TIP . C 3 HOH A 71 345 71 HOH TIP . C 3 HOH A 72 346 72 HOH TIP . C 3 HOH A 73 347 73 HOH TIP . C 3 HOH A 74 348 74 HOH TIP . C 3 HOH A 75 349 75 HOH TIP . C 3 HOH A 76 350 76 HOH TIP . C 3 HOH A 77 351 77 HOH TIP . C 3 HOH A 78 352 78 HOH TIP . C 3 HOH A 79 353 79 HOH TIP . C 3 HOH A 80 354 80 HOH TIP . C 3 HOH A 81 355 81 HOH TIP . C 3 HOH A 82 356 82 HOH TIP . C 3 HOH A 83 357 83 HOH TIP . C 3 HOH A 84 358 84 HOH TIP . C 3 HOH A 85 359 85 HOH TIP . C 3 HOH A 86 360 86 HOH TIP . C 3 HOH A 87 361 87 HOH TIP . C 3 HOH A 88 362 88 HOH TIP . C 3 HOH A 89 363 89 HOH TIP . C 3 HOH A 90 364 90 HOH TIP . C 3 HOH A 91 365 91 HOH TIP . C 3 HOH A 92 366 92 HOH TIP . C 3 HOH A 93 367 93 HOH TIP . C 3 HOH A 94 368 94 HOH TIP . C 3 HOH A 95 369 95 HOH TIP . C 3 HOH A 96 370 96 HOH TIP . C 3 HOH A 97 371 97 HOH TIP . C 3 HOH A 98 372 98 HOH TIP . C 3 HOH A 99 373 99 HOH TIP . C 3 HOH A 100 374 100 HOH TIP . C 3 HOH A 101 375 101 HOH TIP . C 3 HOH A 102 376 102 HOH TIP . C 3 HOH A 103 377 103 HOH TIP . C 3 HOH A 104 378 104 HOH TIP . C 3 HOH A 105 379 105 HOH TIP . C 3 HOH A 106 380 106 HOH TIP . C 3 HOH A 107 381 107 HOH TIP . C 3 HOH A 108 382 108 HOH TIP . C 3 HOH A 109 383 109 HOH TIP . C 3 HOH A 110 384 110 HOH TIP . C 3 HOH A 111 385 111 HOH TIP . C 3 HOH A 112 386 112 HOH TIP . C 3 HOH A 113 387 113 HOH TIP . C 3 HOH A 114 388 114 HOH TIP . C 3 HOH A 115 389 115 HOH TIP . C 3 HOH A 116 390 116 HOH TIP . C 3 HOH A 117 391 117 HOH TIP . C 3 HOH A 118 392 118 HOH TIP . C 3 HOH A 119 393 119 HOH TIP . C 3 HOH A 120 394 120 HOH TIP . C 3 HOH A 121 395 121 HOH TIP . C 3 HOH A 122 396 122 HOH TIP . C 3 HOH A 123 397 123 HOH TIP . C 3 HOH A 124 398 124 HOH TIP . C 3 HOH A 125 399 125 HOH TIP . C 3 HOH A 126 400 126 HOH TIP . C 3 HOH A 127 401 127 HOH TIP . C 3 HOH A 128 402 128 HOH TIP . C 3 HOH A 129 403 129 HOH TIP . C 3 HOH A 130 404 130 HOH TIP . C 3 HOH A 131 405 131 HOH TIP . C 3 HOH A 132 406 132 HOH TIP . C 3 HOH A 133 407 133 HOH TIP . C 3 HOH A 134 408 134 HOH TIP . C 3 HOH A 135 409 136 HOH TIP . C 3 HOH A 136 410 137 HOH TIP . C 3 HOH A 137 411 138 HOH TIP . C 3 HOH A 138 412 139 HOH TIP . C 3 HOH A 139 413 140 HOH TIP . C 3 HOH A 140 414 141 HOH TIP . C 3 HOH A 141 415 142 HOH TIP . C 3 HOH A 142 416 143 HOH TIP . C 3 HOH A 143 417 144 HOH TIP . C 3 HOH A 144 418 145 HOH TIP . C 3 HOH A 145 419 146 HOH TIP . C 3 HOH A 146 420 147 HOH TIP . C 3 HOH A 147 421 149 HOH TIP . C 3 HOH A 148 422 150 HOH TIP . C 3 HOH A 149 423 151 HOH TIP . C 3 HOH A 150 424 152 HOH TIP . C 3 HOH A 151 425 153 HOH TIP . C 3 HOH A 152 426 154 HOH TIP . C 3 HOH A 153 427 155 HOH TIP . C 3 HOH A 154 428 156 HOH TIP . C 3 HOH A 155 429 157 HOH TIP . C 3 HOH A 156 430 158 HOH TIP . C 3 HOH A 157 431 159 HOH TIP . C 3 HOH A 158 432 160 HOH TIP . C 3 HOH A 159 433 161 HOH TIP . C 3 HOH A 160 434 162 HOH TIP . C 3 HOH A 161 435 163 HOH TIP . C 3 HOH A 162 436 164 HOH TIP . C 3 HOH A 163 437 165 HOH TIP . C 3 HOH A 164 438 166 HOH TIP . C 3 HOH A 165 439 167 HOH TIP . C 3 HOH A 166 440 168 HOH TIP . C 3 HOH A 167 441 169 HOH TIP . C 3 HOH A 168 442 170 HOH TIP . C 3 HOH A 169 443 171 HOH TIP . C 3 HOH A 170 444 172 HOH TIP . C 3 HOH A 171 445 173 HOH TIP . C 3 HOH A 172 446 174 HOH TIP . C 3 HOH A 173 447 175 HOH TIP . C 3 HOH A 174 448 176 HOH TIP . C 3 HOH A 175 449 177 HOH TIP . C 3 HOH A 176 450 178 HOH TIP . C 3 HOH A 177 451 179 HOH TIP . C 3 HOH A 178 452 180 HOH TIP . C 3 HOH A 179 453 181 HOH TIP . C 3 HOH A 180 454 182 HOH TIP . C 3 HOH A 181 455 183 HOH TIP . C 3 HOH A 182 456 184 HOH TIP . C 3 HOH A 183 457 185 HOH TIP . C 3 HOH A 184 458 186 HOH TIP . C 3 HOH A 185 459 187 HOH TIP . C 3 HOH A 186 460 188 HOH TIP . C 3 HOH A 187 461 189 HOH TIP . C 3 HOH A 188 462 190 HOH TIP . C 3 HOH A 189 463 191 HOH TIP . C 3 HOH A 190 464 192 HOH TIP . C 3 HOH A 191 465 193 HOH TIP . C 3 HOH A 192 466 194 HOH TIP . C 3 HOH A 193 467 195 HOH TIP . C 3 HOH A 194 468 196 HOH TIP . C 3 HOH A 195 469 197 HOH TIP . C 3 HOH A 196 470 198 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 8.591 -1.953 22.683 1 15 ? N SAH 6732 A 1 HETATM 2 C CA SAH . . . B 2 7.221 -1.691 23.092 1 13.34 ? CA SAH 6732 A 1 HETATM 3 C CB SAH . . . B 2 6.486 -1.08 21.89 1 12.45 ? CB SAH 6732 A 1 HETATM 4 C CG SAH . . . B 2 6.504 -1.881 20.593 1 14.04 ? CG SAH 6732 A 1 HETATM 5 S SD SAH . . . B 2 5.663 -1.099 19.225 1 16.47 ? SD SAH 6732 A 1 HETATM 6 C C SAH . . . B 2 6.485 -3.001 23.567 1 14.61 ? C SAH 6732 A 1 HETATM 7 O O SAH . . . B 2 7.066 -4.016 23.409 1 14.36 ? O SAH 6732 A 1 HETATM 8 O OXT SAH . . . B 2 5.439 -3.071 23.965 1 14.03 ? OXT SAH 6732 A 1 HETATM 9 C C5' SAH . . . B 2 6.983 -0.294 18.484 1 16.74 ? C5' SAH 6732 A 1 HETATM 10 C C4' SAH . . . B 2 7.563 1.061 19.058 1 15.28 ? C4' SAH 6732 A 1 HETATM 11 O O4' SAH . . . B 2 8.524 1.467 18.095 1 17.87 ? O4' SAH 6732 A 1 HETATM 12 C C3' SAH . . . B 2 6.566 2.191 19.153 1 16.44 ? C3' SAH 6732 A 1 HETATM 13 O O3' SAH . . . B 2 6.397 2.575 20.521 1 17.44 ? O3' SAH 6732 A 1 HETATM 14 C C2' SAH . . . B 2 7.196 3.303 18.208 1 16.82 ? C2' SAH 6732 A 1 HETATM 15 O O2' SAH . . . B 2 6.913 4.622 18.646 1 16.65 ? O2' SAH 6732 A 1 HETATM 16 C C1' SAH . . . B 2 8.655 2.899 18.246 1 15.71 ? C1' SAH 6732 A 1 HETATM 17 N N9 SAH . . . B 2 9.485 3.35 17.292 1 14.63 ? N9 SAH 6732 A 1 HETATM 18 C C8 SAH . . . B 2 9.239 3.381 15.928 1 15.89 ? C8 SAH 6732 A 1 HETATM 19 N N7 SAH . . . B 2 10.239 3.861 15.232 1 13.83 ? N7 SAH 6732 A 1 HETATM 20 C C5 SAH . . . B 2 11.208 4.162 16.229 1 14.44 ? C5 SAH 6732 A 1 HETATM 21 C C6 SAH . . . B 2 12.513 4.709 16.024 1 12.91 ? C6 SAH 6732 A 1 HETATM 22 N N6 SAH . . . B 2 13.023 5.024 14.829 1 15.99 ? N6 SAH 6732 A 1 HETATM 23 N N1 SAH . . . B 2 13.223 4.891 17.192 1 14.55 ? N1 SAH 6732 A 1 HETATM 24 C C2 SAH . . . B 2 12.732 4.574 18.431 1 13.38 ? C2 SAH 6732 A 1 HETATM 25 N N3 SAH . . . B 2 11.477 4.04 18.638 1 14.83 ? N3 SAH 6732 A 1 HETATM 26 C C4 SAH . . . B 2 10.779 3.867 17.481 1 14.03 ? C4 SAH 6732 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #