data_3LD4 # _model_server_result.job_id n3uhud2W86CMf2KjnHn3Ng _model_server_result.datetime_utc '2024-11-27 07:17:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ld4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 3LD4 # _exptl.entry_id 3LD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LD4 _cell.length_a 78.582 _cell.length_b 95.045 _cell.length_c 104.371 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 78.582 95.045 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 78.582 0 104.371 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 95.045 104.371 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? metalc ? metalc1 A O ILE 89 A ILE 88 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A O TYR 92 A TYR 91 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc3 A O ASN 93 A ASN 92 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc4 A O ILE 95 A ILE 94 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc5 A OE1 GLU 137 A GLU 136 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc6 D NA NA . A NA 302 1_555 E O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LD4 _atom_sites.fract_transf_matrix[1][1] 0.012726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8NX A 1 300 300 8NX 8NX . C 3 EDO A 1 301 301 EDO EDO . D 4 NA A 1 302 302 NA NA . E 5 HOH A 1 296 1 HOH HOH . E 5 HOH A 2 297 2 HOH HOH . E 5 HOH A 3 298 3 HOH HOH . E 5 HOH A 4 299 4 HOH HOH . E 5 HOH A 5 303 5 HOH HOH . E 5 HOH A 6 304 6 HOH HOH . E 5 HOH A 7 305 7 HOH HOH . E 5 HOH A 8 306 8 HOH HOH . E 5 HOH A 9 307 9 HOH HOH . E 5 HOH A 10 308 10 HOH HOH . E 5 HOH A 11 309 11 HOH HOH . E 5 HOH A 12 310 12 HOH HOH . E 5 HOH A 13 311 13 HOH HOH . E 5 HOH A 14 312 14 HOH HOH . E 5 HOH A 15 313 15 HOH HOH . E 5 HOH A 16 314 16 HOH HOH . E 5 HOH A 17 315 17 HOH HOH . E 5 HOH A 18 316 18 HOH HOH . E 5 HOH A 19 317 19 HOH HOH . E 5 HOH A 20 318 20 HOH HOH . E 5 HOH A 21 319 21 HOH HOH . E 5 HOH A 22 320 22 HOH HOH . E 5 HOH A 23 321 23 HOH HOH . E 5 HOH A 24 322 24 HOH HOH . E 5 HOH A 25 323 25 HOH HOH . E 5 HOH A 26 324 26 HOH HOH . E 5 HOH A 27 325 27 HOH HOH . E 5 HOH A 28 326 28 HOH HOH . E 5 HOH A 29 327 29 HOH HOH . E 5 HOH A 30 328 30 HOH HOH . E 5 HOH A 31 329 31 HOH HOH . E 5 HOH A 32 330 32 HOH HOH . E 5 HOH A 33 331 33 HOH HOH . E 5 HOH A 34 332 34 HOH HOH . E 5 HOH A 35 333 35 HOH HOH . E 5 HOH A 36 334 36 HOH HOH . E 5 HOH A 37 335 37 HOH HOH . E 5 HOH A 38 336 38 HOH HOH . E 5 HOH A 39 337 39 HOH HOH . E 5 HOH A 40 338 40 HOH HOH . E 5 HOH A 41 339 41 HOH HOH . E 5 HOH A 42 340 42 HOH HOH . E 5 HOH A 43 341 43 HOH HOH . E 5 HOH A 44 342 44 HOH HOH . E 5 HOH A 45 343 45 HOH HOH . E 5 HOH A 46 344 46 HOH HOH . E 5 HOH A 47 345 47 HOH HOH . E 5 HOH A 48 346 48 HOH HOH . E 5 HOH A 49 347 49 HOH HOH . E 5 HOH A 50 348 50 HOH HOH . E 5 HOH A 51 349 51 HOH HOH . E 5 HOH A 52 350 52 HOH HOH . E 5 HOH A 53 351 53 HOH HOH . E 5 HOH A 54 352 54 HOH HOH . E 5 HOH A 55 353 55 HOH HOH . E 5 HOH A 56 354 56 HOH HOH . E 5 HOH A 57 355 57 HOH HOH . E 5 HOH A 58 356 58 HOH HOH . E 5 HOH A 59 357 59 HOH HOH . E 5 HOH A 60 358 60 HOH HOH . E 5 HOH A 61 359 61 HOH HOH . E 5 HOH A 62 360 62 HOH HOH . E 5 HOH A 63 361 63 HOH HOH . E 5 HOH A 64 362 64 HOH HOH . E 5 HOH A 65 363 65 HOH HOH . E 5 HOH A 66 364 66 HOH HOH . E 5 HOH A 67 365 67 HOH HOH . E 5 HOH A 68 366 68 HOH HOH . E 5 HOH A 69 367 69 HOH HOH . E 5 HOH A 70 368 70 HOH HOH . E 5 HOH A 71 369 71 HOH HOH . E 5 HOH A 72 370 72 HOH HOH . E 5 HOH A 73 371 73 HOH HOH . E 5 HOH A 74 372 74 HOH HOH . E 5 HOH A 75 373 75 HOH HOH . E 5 HOH A 76 374 76 HOH HOH . E 5 HOH A 77 375 77 HOH HOH . E 5 HOH A 78 376 78 HOH HOH . E 5 HOH A 79 377 79 HOH HOH . E 5 HOH A 80 378 80 HOH HOH . E 5 HOH A 81 379 81 HOH HOH . E 5 HOH A 82 380 82 HOH HOH . E 5 HOH A 83 381 83 HOH HOH . E 5 HOH A 84 382 84 HOH HOH . E 5 HOH A 85 383 85 HOH HOH . E 5 HOH A 86 384 86 HOH HOH . E 5 HOH A 87 385 87 HOH HOH . E 5 HOH A 88 386 88 HOH HOH . E 5 HOH A 89 387 89 HOH HOH . E 5 HOH A 90 388 90 HOH HOH . E 5 HOH A 91 389 91 HOH HOH . E 5 HOH A 92 390 92 HOH HOH . E 5 HOH A 93 391 93 HOH HOH . E 5 HOH A 94 392 94 HOH HOH . E 5 HOH A 95 393 95 HOH HOH . E 5 HOH A 96 394 96 HOH HOH . E 5 HOH A 97 395 97 HOH HOH . E 5 HOH A 98 396 98 HOH HOH . E 5 HOH A 99 397 99 HOH HOH . E 5 HOH A 100 398 100 HOH HOH . E 5 HOH A 101 399 101 HOH HOH . E 5 HOH A 102 400 102 HOH HOH . E 5 HOH A 103 401 103 HOH HOH . E 5 HOH A 104 402 104 HOH HOH . E 5 HOH A 105 403 105 HOH HOH . E 5 HOH A 106 404 106 HOH HOH . E 5 HOH A 107 405 107 HOH HOH . E 5 HOH A 108 406 108 HOH HOH . E 5 HOH A 109 407 109 HOH HOH . E 5 HOH A 110 408 110 HOH HOH . E 5 HOH A 111 409 111 HOH HOH . E 5 HOH A 112 410 112 HOH HOH . E 5 HOH A 113 411 113 HOH HOH . E 5 HOH A 114 412 114 HOH HOH . E 5 HOH A 115 413 115 HOH HOH . E 5 HOH A 116 414 116 HOH HOH . E 5 HOH A 117 415 117 HOH HOH . E 5 HOH A 118 416 118 HOH HOH . E 5 HOH A 119 417 119 HOH HOH . E 5 HOH A 120 418 120 HOH HOH . E 5 HOH A 121 419 121 HOH HOH . E 5 HOH A 122 420 122 HOH HOH . E 5 HOH A 123 421 123 HOH HOH . E 5 HOH A 124 422 124 HOH HOH . E 5 HOH A 125 423 125 HOH HOH . E 5 HOH A 126 424 126 HOH HOH . E 5 HOH A 127 425 127 HOH HOH . E 5 HOH A 128 426 128 HOH HOH . E 5 HOH A 129 427 129 HOH HOH . E 5 HOH A 130 428 130 HOH HOH . E 5 HOH A 131 429 131 HOH HOH . E 5 HOH A 132 430 132 HOH HOH . E 5 HOH A 133 431 133 HOH HOH . E 5 HOH A 134 432 134 HOH HOH . E 5 HOH A 135 433 135 HOH HOH . E 5 HOH A 136 434 136 HOH HOH . E 5 HOH A 137 435 137 HOH HOH . E 5 HOH A 138 436 138 HOH HOH . E 5 HOH A 139 437 139 HOH HOH . E 5 HOH A 140 438 140 HOH HOH . E 5 HOH A 141 439 141 HOH HOH . E 5 HOH A 142 440 142 HOH HOH . E 5 HOH A 143 441 143 HOH HOH . E 5 HOH A 144 442 144 HOH HOH . E 5 HOH A 145 443 145 HOH HOH . E 5 HOH A 146 444 146 HOH HOH . E 5 HOH A 147 445 147 HOH HOH . E 5 HOH A 148 446 148 HOH HOH . E 5 HOH A 149 447 149 HOH HOH . E 5 HOH A 150 448 150 HOH HOH . E 5 HOH A 151 449 151 HOH HOH . E 5 HOH A 152 450 152 HOH HOH . E 5 HOH A 153 451 153 HOH HOH . E 5 HOH A 154 452 154 HOH HOH . E 5 HOH A 155 453 155 HOH HOH . E 5 HOH A 156 454 156 HOH HOH . E 5 HOH A 157 455 157 HOH HOH . E 5 HOH A 158 456 158 HOH HOH . E 5 HOH A 159 457 159 HOH HOH . E 5 HOH A 160 458 160 HOH HOH . E 5 HOH A 161 459 161 HOH HOH . E 5 HOH A 162 460 162 HOH HOH . E 5 HOH A 163 461 163 HOH HOH . E 5 HOH A 164 462 164 HOH HOH . E 5 HOH A 165 463 165 HOH HOH . E 5 HOH A 166 464 166 HOH HOH . E 5 HOH A 167 465 167 HOH HOH . E 5 HOH A 168 466 168 HOH HOH . E 5 HOH A 169 467 169 HOH HOH . E 5 HOH A 170 468 170 HOH HOH . E 5 HOH A 171 469 171 HOH HOH . E 5 HOH A 172 470 172 HOH HOH . E 5 HOH A 173 471 173 HOH HOH . E 5 HOH A 174 472 174 HOH HOH . E 5 HOH A 175 473 175 HOH HOH . E 5 HOH A 176 474 176 HOH HOH . E 5 HOH A 177 475 177 HOH HOH . E 5 HOH A 178 476 178 HOH HOH . E 5 HOH A 179 477 179 HOH HOH . E 5 HOH A 180 478 180 HOH HOH . E 5 HOH A 181 479 181 HOH HOH . E 5 HOH A 182 480 182 HOH HOH . E 5 HOH A 183 481 183 HOH HOH . E 5 HOH A 184 482 184 HOH HOH . E 5 HOH A 185 483 185 HOH HOH . E 5 HOH A 186 484 186 HOH HOH . E 5 HOH A 187 485 187 HOH HOH . E 5 HOH A 188 486 188 HOH HOH . E 5 HOH A 189 487 189 HOH HOH . E 5 HOH A 190 488 190 HOH HOH . E 5 HOH A 191 489 191 HOH HOH . E 5 HOH A 192 490 192 HOH HOH . E 5 HOH A 193 491 193 HOH HOH . E 5 HOH A 194 492 194 HOH HOH . E 5 HOH A 195 493 195 HOH HOH . E 5 HOH A 196 494 196 HOH HOH . E 5 HOH A 197 495 197 HOH HOH . E 5 HOH A 198 496 198 HOH HOH . E 5 HOH A 199 497 199 HOH HOH . E 5 HOH A 200 498 200 HOH HOH . E 5 HOH A 201 499 201 HOH HOH . E 5 HOH A 202 500 202 HOH HOH . E 5 HOH A 203 501 203 HOH HOH . E 5 HOH A 204 502 204 HOH HOH . E 5 HOH A 205 503 205 HOH HOH . E 5 HOH A 206 504 206 HOH HOH . E 5 HOH A 207 505 207 HOH HOH . E 5 HOH A 208 506 208 HOH HOH . E 5 HOH A 209 507 209 HOH HOH . E 5 HOH A 210 508 210 HOH HOH . E 5 HOH A 211 509 211 HOH HOH . E 5 HOH A 212 510 212 HOH HOH . E 5 HOH A 213 511 213 HOH HOH . E 5 HOH A 214 512 214 HOH HOH . E 5 HOH A 215 513 215 HOH HOH . E 5 HOH A 216 514 216 HOH HOH . E 5 HOH A 217 515 217 HOH HOH . E 5 HOH A 218 516 218 HOH HOH . E 5 HOH A 219 517 219 HOH HOH . E 5 HOH A 220 518 220 HOH HOH . E 5 HOH A 221 519 221 HOH HOH . E 5 HOH A 222 520 222 HOH HOH . E 5 HOH A 223 521 223 HOH HOH . E 5 HOH A 224 522 224 HOH HOH . E 5 HOH A 225 523 225 HOH HOH . E 5 HOH A 226 524 226 HOH HOH . E 5 HOH A 227 525 227 HOH HOH . E 5 HOH A 228 526 228 HOH HOH . E 5 HOH A 229 527 229 HOH HOH . E 5 HOH A 230 528 230 HOH HOH . E 5 HOH A 231 529 231 HOH HOH . E 5 HOH A 232 530 232 HOH HOH . E 5 HOH A 233 531 233 HOH HOH . E 5 HOH A 234 532 234 HOH HOH . E 5 HOH A 235 533 235 HOH HOH . E 5 HOH A 236 534 236 HOH HOH . E 5 HOH A 237 535 237 HOH HOH . E 5 HOH A 238 536 238 HOH HOH . E 5 HOH A 239 537 239 HOH HOH . E 5 HOH A 240 538 240 HOH HOH . E 5 HOH A 241 539 241 HOH HOH . E 5 HOH A 242 540 242 HOH HOH . E 5 HOH A 243 541 243 HOH HOH . E 5 HOH A 244 542 244 HOH HOH . E 5 HOH A 245 543 245 HOH HOH . E 5 HOH A 246 544 246 HOH HOH . E 5 HOH A 247 545 247 HOH HOH . E 5 HOH A 248 546 248 HOH HOH . E 5 HOH A 249 547 249 HOH HOH . E 5 HOH A 250 548 250 HOH HOH . E 5 HOH A 251 549 251 HOH HOH . E 5 HOH A 252 550 252 HOH HOH . E 5 HOH A 253 551 253 HOH HOH . E 5 HOH A 254 552 254 HOH HOH . E 5 HOH A 255 553 255 HOH HOH . E 5 HOH A 256 554 256 HOH HOH . E 5 HOH A 257 555 257 HOH HOH . E 5 HOH A 258 556 258 HOH HOH . E 5 HOH A 259 557 259 HOH HOH . E 5 HOH A 260 558 260 HOH HOH . E 5 HOH A 261 559 261 HOH HOH . E 5 HOH A 262 560 262 HOH HOH . E 5 HOH A 263 561 263 HOH HOH . E 5 HOH A 264 562 264 HOH HOH . E 5 HOH A 265 563 265 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 36.631 _atom_site.Cartn_y 70.537 _atom_site.Cartn_z 21.698 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 1 #