data_3LDB
#
_model_server_result.job_id            KuNiKZJkQ4hLYHD5LoxSpw 
_model_server_result.datetime_utc      '2025-03-06 09:09:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ldb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":352}' 
#
_entry.id    3LDB 
#
_exptl.entry_id    3LDB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              200.59 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MERCURY (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LDB 
_cell.length_a            138.381 
_cell.length_b            138.381 
_cell.length_c            183.622 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LDB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 W N N 
? 8 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 23 B CYS 23 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf2 B SG CYS 140 B CYS 140 1_555 B SG CYS 200 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 C SG CYS 147 C CYS 147 1_555 C SG CYS 202 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A SG CYS 101 A CYS 101 1_555 X HG HG . A HG 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc2 A NE2 HIS 187 A HIS 187 1_555 V FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc3 A SG CYS 207 A CYS 207 1_555 W HG HG . A HG 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? 
metalc ? metalc4 A NE2 HIS 273 A HIS 273 1_555 V FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
#
_chem_comp.formula           'Hg 2' 
_chem_comp.formula_weight    200.59 
_chem_comp.id                HG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MERCURY (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3LDB 
_atom_sites.fract_transf_matrix[1][1]    0.007226 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007226 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005446 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 335 1 GOL GOL . 
E 4 GOL A 1 336 2 GOL GOL . 
F 4 GOL A 1 337 3 GOL GOL . 
G 4 GOL A 1 338 4 GOL GOL . 
H 5 SO4 A 1 339 1 SO4 SO4 . 
I 5 SO4 A 1 340 3 SO4 SO4 . 
J 5 SO4 A 1 341 4 SO4 SO4 . 
K 5 SO4 A 1 342 5 SO4 SO4 . 
L 5 SO4 A 1 343 6 SO4 SO4 . 
M 5 SO4 A 1 344 8 SO4 SO4 . 
N 5 SO4 A 1 345 9 SO4 SO4 . 
O 5 SO4 A 1 346 10 SO4 SO4 . 
P 5 SO4 A 1 347 11 SO4 SO4 . 
Q 5 SO4 A 1 348 12 SO4 SO4 . 
R 5 SO4 A 1 349 13 SO4 SO4 . 
S 5 SO4 A 1 350 14 SO4 SO4 . 
T 5 SO4 A 1 351 18 SO4 SO4 . 
U 6 AKG A 1 600 600 AKG AKG . 
V 7 FE A 1 601 601 FE FE . 
W 8 HG A 1 352 1 HG HG . 
X 8 HG A 1 353 2 HG HG . 
Y 4 GOL B 1 221 6 GOL GOL . 
Z 5 SO4 B 1 222 7 SO4 SO4 . 
AA 5 SO4 B 1 223 15 SO4 SO4 . 
BA 5 SO4 B 1 224 19 SO4 SO4 . 
CA 5 SO4 C 1 222 2 SO4 SO4 . 
DA 5 SO4 C 1 223 16 SO4 SO4 . 
EA 5 SO4 C 1 224 17 SO4 SO4 . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           HG 
_atom_site.label_atom_id         HG 
_atom_site.label_comp_id         HG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         W 
_atom_site.label_entity_id       8 
_atom_site.Cartn_x               -1.335 
_atom_site.Cartn_y               -57.234 
_atom_site.Cartn_z               -37.656 
_atom_site.occupancy             0.8 
_atom_site.B_iso_or_equiv        98.2 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          HG 
_atom_site.auth_comp_id          HG 
_atom_site.auth_seq_id           352 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#