data_3LDX
#
_model_server_result.job_id            X4ZHBc5A8-t66N9U_Jh4Jg 
_model_server_result.datetime_utc      '2024-12-27 00:27:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ldx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    3LDX 
#
_exptl.entry_id    3LDX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              423.417 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[2-(carbamimidamidooxy)ethyl]-2-{3-[(2,2-difluoro-2-phenylethyl)amino]-6-methyl-2-oxopyrazin-1(2H)-yl}acetamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.06 
_cell.angle_gamma         90 
_cell.entry_id            3LDX 
_cell.length_a            71.099 
_cell.length_b            72.008 
_cell.length_c            73.412 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LDX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
#
_chem_comp.formula           'C18 H23 F2 N7 O3' 
_chem_comp.formula_weight    423.417 
_chem_comp.id                NLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[2-(carbamimidamidooxy)ethyl]-2-{3-[(2,2-difluoro-2-phenylethyl)amino]-6-methyl-2-oxopyrazin-1(2H)-yl}acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     RWJ-671818 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 NLI sing 237 n n 
C02 N19 NLI sing 238 n n 
C02 C03 NLI doub 239 n n 
C03 N04 NLI sing 240 n n 
N04 C05 NLI doub 241 n n 
C05 N06 NLI sing 242 n n 
N06 C07 NLI sing 243 n n 
C07 C08 NLI sing 244 n n 
C08 F10 NLI sing 245 n n 
C08 F09 NLI sing 246 n n 
C11 C08 NLI sing 247 n n 
C11 C16 NLI sing 248 n y 
C12 C11 NLI doub 249 n y 
C13 C12 NLI sing 250 n y 
C13 C14 NLI doub 251 n y 
C14 C15 NLI sing 252 n y 
C15 C16 NLI doub 253 n y 
C17 C05 NLI sing 254 n n 
C17 O18 NLI doub 255 n n 
N19 C17 NLI sing 256 n n 
C20 N19 NLI sing 257 n n 
C21 C20 NLI sing 258 n n 
C21 N23 NLI sing 259 n n 
O22 C21 NLI doub 260 n n 
C24 N23 NLI sing 261 n n 
C24 C25 NLI sing 262 n n 
C25 O26 NLI sing 263 n n 
O26 N27 NLI sing 264 n n 
N27 C28 NLI sing 265 n n 
C28 N29 NLI doub 266 n n 
C28 N30 NLI sing 267 n n 
N29 HN29 NLI sing 268 n n 
C01 H01 NLI sing 269 n n 
C01 H01A NLI sing 270 n n 
C01 H4 NLI sing 271 n n 
C03 H03 NLI sing 272 n n 
N06 H6 NLI sing 273 n n 
C07 H07 NLI sing 274 n n 
C07 H07A NLI sing 275 n n 
C12 H12 NLI sing 276 n n 
C13 H13 NLI sing 277 n n 
C14 H14 NLI sing 278 n n 
C15 H15 NLI sing 279 n n 
C16 H16 NLI sing 280 n n 
C20 H20 NLI sing 281 n n 
C20 H20A NLI sing 282 n n 
N23 HN23 NLI sing 283 n n 
C24 H24 NLI sing 284 n n 
C24 H24A NLI sing 285 n n 
C25 H25 NLI sing 286 n n 
C25 H25A NLI sing 287 n n 
N27 HN27 NLI sing 288 n n 
N30 HN30 NLI sing 289 n n 
N30 HN3A NLI sing 290 n n 
#
_atom_sites.entry_id                     3LDX 
_atom_sites.fract_transf_matrix[1][1]    0.014065 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00275 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013887 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01388 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NLI H 1 1 1 NLI LIG . 
E 5 HOH L 1 57 57 HOH HOH . 
E 5 HOH L 2 61 61 HOH HOH . 
F 5 HOH H 1 2 2 HOH HOH . 
F 5 HOH H 2 3 3 HOH HOH . 
F 5 HOH H 3 4 4 HOH HOH . 
F 5 HOH H 4 7 7 HOH HOH . 
F 5 HOH H 5 11 11 HOH HOH . 
F 5 HOH H 6 14 14 HOH HOH . 
F 5 HOH H 7 15 15 HOH HOH . 
F 5 HOH H 8 248 16 HOH HOH . 
F 5 HOH H 9 249 18 HOH HOH . 
F 5 HOH H 10 250 19 HOH HOH . 
F 5 HOH H 11 251 28 HOH HOH . 
F 5 HOH H 12 252 29 HOH HOH . 
F 5 HOH H 13 253 30 HOH HOH . 
F 5 HOH H 14 254 31 HOH HOH . 
F 5 HOH H 15 255 32 HOH HOH . 
F 5 HOH H 16 256 33 HOH HOH . 
F 5 HOH H 17 257 34 HOH HOH . 
F 5 HOH H 18 258 35 HOH HOH . 
F 5 HOH H 19 259 36 HOH HOH . 
F 5 HOH H 20 260 37 HOH HOH . 
F 5 HOH H 21 261 38 HOH HOH . 
F 5 HOH H 22 262 39 HOH HOH . 
F 5 HOH H 23 263 40 HOH HOH . 
F 5 HOH H 24 264 41 HOH HOH . 
F 5 HOH H 25 265 42 HOH HOH . 
F 5 HOH H 26 266 43 HOH HOH . 
F 5 HOH H 27 267 44 HOH HOH . 
F 5 HOH H 28 268 45 HOH HOH . 
F 5 HOH H 29 269 46 HOH HOH . 
F 5 HOH H 30 270 47 HOH HOH . 
F 5 HOH H 31 271 48 HOH HOH . 
F 5 HOH H 32 272 49 HOH HOH . 
F 5 HOH H 33 273 50 HOH HOH . 
F 5 HOH H 34 274 51 HOH HOH . 
F 5 HOH H 35 275 52 HOH HOH . 
F 5 HOH H 36 276 53 HOH HOH . 
F 5 HOH H 37 277 54 HOH HOH . 
F 5 HOH H 38 278 55 HOH HOH . 
F 5 HOH H 39 279 56 HOH HOH . 
F 5 HOH H 40 280 58 HOH HOH . 
F 5 HOH H 41 281 59 HOH HOH . 
F 5 HOH H 42 282 60 HOH HOH . 
F 5 HOH H 43 283 62 HOH HOH . 
F 5 HOH H 44 284 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 NLI . . . D 4 20.172 -13.244 20.034 1 20.57 ? C01 NLI 1 H 1 
HETATM 2 C C02 NLI . . . D 4 19.234 -14.038 20.921 1 24.88 ? C02 NLI 1 H 1 
HETATM 3 C C03 NLI . . . D 4 19.633 -15.25 21.445 1 18.78 ? C03 NLI 1 H 1 
HETATM 4 N N04 NLI . . . D 4 18.995 -15.935 22.465 1 19.64 ? N04 NLI 1 H 1 
HETATM 5 C C05 NLI . . . D 4 17.799 -15.538 22.816 1 20.71 ? C05 NLI 1 H 1 
HETATM 6 N N06 NLI . . . D 4 17.066 -16.152 23.905 1 22.88 ? N06 NLI 1 H 1 
HETATM 7 C C07 NLI . . . D 4 17.63 -17.387 24.475 1 18.06 ? C07 NLI 1 H 1 
HETATM 8 C C08 NLI . . . D 4 18.348 -17.088 25.887 1 23.88 ? C08 NLI 1 H 1 
HETATM 9 F F09 NLI . . . D 4 17.49 -16.458 26.716 1 25.51 ? F09 NLI 1 H 1 
HETATM 10 F F10 NLI . . . D 4 18.613 -18.236 26.495 1 26.7 ? F10 NLI 1 H 1 
HETATM 11 C C11 NLI . . . D 4 19.611 -16.203 25.777 1 16.88 ? C11 NLI 1 H 1 
HETATM 12 C C12 NLI . . . D 4 20.787 -16.718 25.238 1 23.14 ? C12 NLI 1 H 1 
HETATM 13 C C13 NLI . . . D 4 21.941 -15.93 25.127 1 23.73 ? C13 NLI 1 H 1 
HETATM 14 C C14 NLI . . . D 4 21.924 -14.598 25.54 1 18.58 ? C14 NLI 1 H 1 
HETATM 15 C C15 NLI . . . D 4 20.745 -14.089 26.081 1 19.38 ? C15 NLI 1 H 1 
HETATM 16 C C16 NLI . . . D 4 19.601 -14.879 26.2 1 18.3 ? C16 NLI 1 H 1 
HETATM 17 C C17 NLI . . . D 4 17.298 -14.187 22.434 1 16.95 ? C17 NLI 1 H 1 
HETATM 18 O O18 NLI . . . D 4 16.239 -13.729 22.84 1 17.96 ? O18 NLI 1 H 1 
HETATM 19 N N19 NLI . . . D 4 18.059 -13.475 21.44 1 18.88 ? N19 NLI 1 H 1 
HETATM 20 C C20 NLI . . . D 4 17.509 -12.167 21.027 1 21.44 ? C20 NLI 1 H 1 
HETATM 21 C C21 NLI . . . D 4 16.076 -12.403 20.49 1 19.06 ? C21 NLI 1 H 1 
HETATM 22 O O22 NLI . . . D 4 15.744 -13.563 20.264 1 17.39 ? O22 NLI 1 H 1 
HETATM 23 N N23 NLI . . . D 4 15.131 -11.469 20.9 1 17.28 ? N23 NLI 1 H 1 
HETATM 24 C C24 NLI . . . D 4 13.786 -11.373 20.269 1 16.16 ? C24 NLI 1 H 1 
HETATM 25 C C25 NLI . . . D 4 12.876 -10.563 21.248 1 19.87 ? C25 NLI 1 H 1 
HETATM 26 O O26 NLI . . . D 4 12.816 -11.533 22.307 1 17.33 ? O26 NLI 1 H 1 
HETATM 27 N N27 NLI . . . D 4 12.515 -10.946 23.48 1 16.96 ? N27 NLI 1 H 1 
HETATM 28 C C28 NLI . . . D 4 11.254 -11.526 24.025 1 20.6 ? C28 NLI 1 H 1 
HETATM 29 N N29 NLI . . . D 4 10.996 -12.785 24.059 1 16.49 ? N29 NLI 1 H 1 
HETATM 30 N N30 NLI . . . D 4 10.412 -10.604 24.737 1 20.64 ? N30 NLI 1 H 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#