data_3LE0 # _model_server_result.job_id ze74s-wpWIk6fiX9M52Bew _model_server_result.datetime_utc '2024-11-27 21:50:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3le0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":192}' # _entry.id 3LE0 # _exptl.entry_id 3LE0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LE0 _cell.length_a 67.189 _cell.length_b 67.189 _cell.length_c 98.322 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B CA CA . A CA 1 1_555 A O ARG 31 A ARG 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 B CA CA . A CA 1 1_555 A OD1 ASP 34 A ASP 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 B CA CA . A CA 1 1_555 A O ASN 36 A ASN 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 B CA CA . A CA 1 1_555 A OG SER 45 A SER 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 B CA CA . A CA 1 1_555 A O SER 45 A SER 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc6 B CA CA . A CA 1 1_555 A O ALA 139 A ALA 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc7 B CA CA . A CA 1 1_555 A OE1 GLU 140 A GLU 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc8 A NE2 HIS 43 A HIS 80 1_555 C NI NI . A NI 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc9 C NI NI . A NI 191 1_555 E O HOH . A HOH 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc10 C NI NI . A NI 191 1_555 E O HOH . A HOH 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc11 C NI NI . A NI 191 1_555 E O HOH . A HOH 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc12 C NI NI . A NI 191 1_555 E O HOH . A HOH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc13 C NI NI . A NI 191 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3LE0 _atom_sites.fract_transf_matrix[1][1] 0.014883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014883 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1 1 CA CA . C 3 NI A 1 191 191 NI NI . D 4 GOL A 1 192 192 GOL GOL . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 3 3 HOH HOH . E 5 HOH A 3 4 4 HOH HOH . E 5 HOH A 4 5 5 HOH HOH . E 5 HOH A 5 6 6 HOH HOH . E 5 HOH A 6 7 7 HOH HOH . E 5 HOH A 7 8 8 HOH HOH . E 5 HOH A 8 9 9 HOH HOH . E 5 HOH A 9 10 10 HOH HOH . E 5 HOH A 10 11 11 HOH HOH . E 5 HOH A 11 12 12 HOH HOH . E 5 HOH A 12 13 13 HOH HOH . E 5 HOH A 13 14 14 HOH HOH . E 5 HOH A 14 15 15 HOH HOH . E 5 HOH A 15 16 16 HOH HOH . E 5 HOH A 16 17 17 HOH HOH . E 5 HOH A 17 18 18 HOH HOH . E 5 HOH A 18 19 19 HOH HOH . E 5 HOH A 19 20 20 HOH HOH . E 5 HOH A 20 21 21 HOH HOH . E 5 HOH A 21 22 22 HOH HOH . E 5 HOH A 22 23 23 HOH HOH . E 5 HOH A 23 24 24 HOH HOH . E 5 HOH A 24 25 25 HOH HOH . E 5 HOH A 25 26 26 HOH HOH . E 5 HOH A 26 27 27 HOH HOH . E 5 HOH A 27 28 28 HOH HOH . E 5 HOH A 28 29 29 HOH HOH . E 5 HOH A 29 30 30 HOH HOH . E 5 HOH A 30 31 31 HOH HOH . E 5 HOH A 31 32 32 HOH HOH . E 5 HOH A 32 33 33 HOH HOH . E 5 HOH A 33 34 34 HOH HOH . E 5 HOH A 34 35 35 HOH HOH . E 5 HOH A 35 36 36 HOH HOH . E 5 HOH A 36 37 37 HOH HOH . E 5 HOH A 37 193 193 HOH HOH . E 5 HOH A 38 194 194 HOH HOH . E 5 HOH A 39 195 195 HOH HOH . E 5 HOH A 40 196 196 HOH HOH . E 5 HOH A 41 197 197 HOH HOH . E 5 HOH A 42 198 198 HOH HOH . E 5 HOH A 43 199 199 HOH HOH . E 5 HOH A 44 200 200 HOH HOH . E 5 HOH A 45 201 201 HOH HOH . E 5 HOH A 46 202 202 HOH HOH . E 5 HOH A 47 203 203 HOH HOH . E 5 HOH A 48 204 204 HOH HOH . E 5 HOH A 49 205 205 HOH HOH . E 5 HOH A 50 206 206 HOH HOH . E 5 HOH A 51 207 207 HOH HOH . E 5 HOH A 52 208 208 HOH HOH . E 5 HOH A 53 209 209 HOH HOH . E 5 HOH A 54 210 210 HOH HOH . E 5 HOH A 55 211 211 HOH HOH . E 5 HOH A 56 212 212 HOH HOH . E 5 HOH A 57 213 213 HOH HOH . E 5 HOH A 58 214 214 HOH HOH . E 5 HOH A 59 215 215 HOH HOH . E 5 HOH A 60 216 216 HOH HOH . E 5 HOH A 61 217 217 HOH HOH . E 5 HOH A 62 218 218 HOH HOH . E 5 HOH A 63 219 219 HOH HOH . E 5 HOH A 64 220 220 HOH HOH . E 5 HOH A 65 221 221 HOH HOH . E 5 HOH A 66 222 222 HOH HOH . E 5 HOH A 67 223 223 HOH HOH . E 5 HOH A 68 224 224 HOH HOH . E 5 HOH A 69 225 225 HOH HOH . E 5 HOH A 70 226 226 HOH HOH . E 5 HOH A 71 227 227 HOH HOH . E 5 HOH A 72 228 228 HOH HOH . E 5 HOH A 73 229 229 HOH HOH . E 5 HOH A 74 230 230 HOH HOH . E 5 HOH A 75 231 231 HOH HOH . E 5 HOH A 76 232 232 HOH HOH . E 5 HOH A 77 233 233 HOH HOH . E 5 HOH A 78 234 234 HOH HOH . E 5 HOH A 79 235 235 HOH HOH . E 5 HOH A 80 236 236 HOH HOH . E 5 HOH A 81 237 237 HOH HOH . E 5 HOH A 82 238 238 HOH HOH . E 5 HOH A 83 239 239 HOH HOH . E 5 HOH A 84 240 240 HOH HOH . E 5 HOH A 85 241 241 HOH HOH . E 5 HOH A 86 242 242 HOH HOH . E 5 HOH A 87 243 243 HOH HOH . E 5 HOH A 88 244 244 HOH HOH . E 5 HOH A 89 245 245 HOH HOH . E 5 HOH A 90 246 246 HOH HOH . E 5 HOH A 91 247 247 HOH HOH . E 5 HOH A 92 248 248 HOH HOH . E 5 HOH A 93 249 249 HOH HOH . E 5 HOH A 94 250 250 HOH HOH . E 5 HOH A 95 251 251 HOH HOH . E 5 HOH A 96 252 252 HOH HOH . E 5 HOH A 97 253 253 HOH HOH . E 5 HOH A 98 254 254 HOH HOH . E 5 HOH A 99 255 255 HOH HOH . E 5 HOH A 100 256 256 HOH HOH . E 5 HOH A 101 257 257 HOH HOH . E 5 HOH A 102 258 258 HOH HOH . E 5 HOH A 103 259 259 HOH HOH . E 5 HOH A 104 260 260 HOH HOH . E 5 HOH A 105 261 261 HOH HOH . E 5 HOH A 106 262 262 HOH HOH . E 5 HOH A 107 263 263 HOH HOH . E 5 HOH A 108 264 264 HOH HOH . E 5 HOH A 109 265 265 HOH HOH . E 5 HOH A 110 266 266 HOH HOH . E 5 HOH A 111 267 267 HOH HOH . E 5 HOH A 112 268 268 HOH HOH . E 5 HOH A 113 269 269 HOH HOH . E 5 HOH A 114 270 270 HOH HOH . E 5 HOH A 115 271 271 HOH HOH . E 5 HOH A 116 272 272 HOH HOH . E 5 HOH A 117 273 273 HOH HOH . E 5 HOH A 118 274 274 HOH HOH . E 5 HOH A 119 275 275 HOH HOH . E 5 HOH A 120 276 276 HOH HOH . E 5 HOH A 121 277 277 HOH HOH . E 5 HOH A 122 278 278 HOH HOH . E 5 HOH A 123 279 279 HOH HOH . E 5 HOH A 124 280 280 HOH HOH . E 5 HOH A 125 281 281 HOH HOH . E 5 HOH A 126 282 282 HOH HOH . E 5 HOH A 127 283 283 HOH HOH . E 5 HOH A 128 284 284 HOH HOH . E 5 HOH A 129 285 285 HOH HOH . E 5 HOH A 130 286 286 HOH HOH . E 5 HOH A 131 287 287 HOH HOH . E 5 HOH A 132 288 288 HOH HOH . E 5 HOH A 133 289 289 HOH HOH . E 5 HOH A 134 290 290 HOH HOH . E 5 HOH A 135 291 291 HOH HOH . E 5 HOH A 136 292 292 HOH HOH . E 5 HOH A 137 293 293 HOH HOH . E 5 HOH A 138 294 294 HOH HOH . E 5 HOH A 139 295 295 HOH HOH . E 5 HOH A 140 296 296 HOH HOH . E 5 HOH A 141 297 297 HOH HOH . E 5 HOH A 142 298 298 HOH HOH . E 5 HOH A 143 299 299 HOH HOH . E 5 HOH A 144 300 300 HOH HOH . E 5 HOH A 145 301 301 HOH HOH . E 5 HOH A 146 302 302 HOH HOH . E 5 HOH A 147 303 303 HOH HOH . E 5 HOH A 148 304 304 HOH HOH . E 5 HOH A 149 305 305 HOH HOH . E 5 HOH A 150 306 306 HOH HOH . E 5 HOH A 151 307 307 HOH HOH . E 5 HOH A 152 308 308 HOH HOH . E 5 HOH A 153 309 309 HOH HOH . E 5 HOH A 154 310 310 HOH HOH . E 5 HOH A 155 311 311 HOH HOH . E 5 HOH A 156 312 312 HOH HOH . E 5 HOH A 157 313 313 HOH HOH . E 5 HOH A 158 314 314 HOH HOH . E 5 HOH A 159 315 315 HOH HOH . E 5 HOH A 160 316 316 HOH HOH . E 5 HOH A 161 317 317 HOH HOH . E 5 HOH A 162 318 318 HOH HOH . E 5 HOH A 163 319 319 HOH HOH . E 5 HOH A 164 320 320 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -2.333 -7.226 -19.35 1 48.07 ? C1 GOL 192 A 1 HETATM 2 O O1 GOL . . . D 4 -2.185 -5.846 -19.621 1 48.95 ? O1 GOL 192 A 1 HETATM 3 C C2 GOL . . . D 4 -3.239 -7.474 -18.143 1 48.45 ? C2 GOL 192 A 1 HETATM 4 O O2 GOL . . . D 4 -3.173 -6.35 -17.286 1 48.02 ? O2 GOL 192 A 1 HETATM 5 C C3 GOL . . . D 4 -2.64 -8.647 -17.377 1 46.72 ? C3 GOL 192 A 1 HETATM 6 O O3 GOL . . . D 4 -3.55 -9.69 -17.166 1 43.46 ? O3 GOL 192 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #