data_3LEE # _model_server_result.job_id Q75F70orxnAtVI1alDV7hg _model_server_result.datetime_utc '2024-11-02 17:19:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":452}' # _entry.id 3LEE # _exptl.entry_id 3LEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.5 _cell.angle_gamma 90 _cell.entry_id 3LEE _cell.length_a 85.662 _cell.length_b 153.422 _cell.length_c 92.904 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,H,S 1 1 B,I,J,T 2 1 C,K,L,U 3 1 D,M,N,V 4 1 E,O,P,W 5 1 F,Q,R,X 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 50 A ASP 80 1_555 H MG MG . A MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc2 A OE2 GLU 53 A GLU 83 1_555 H MG MG . A MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc3 A OD2 ASP 54 A ASP 84 1_555 H MG MG . A MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 A OD1 ASP 54 A ASP 84 1_555 H MG MG . A MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc5 G OAC B65 . A B65 451 1_555 H MG MG . A MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc6 G OAA B65 . A B65 451 1_555 H MG MG . A MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc7 B OD1 ASP 50 B ASP 80 1_555 J MG MG . B MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc8 B OE1 GLU 53 B GLU 83 1_555 J MG MG . B MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc9 B OD1 ASP 54 B ASP 84 1_555 J MG MG . B MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc10 I OAA B65 . B B65 451 1_555 J MG MG . B MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc11 I OAC B65 . B B65 451 1_555 J MG MG . B MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc12 C OD2 ASP 50 C ASP 80 1_555 L MG MG . C MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc13 C OE1 GLU 53 C GLU 83 1_555 L MG MG . C MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc14 C OD1 ASP 54 C ASP 84 1_555 L MG MG . C MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc15 K OAC B65 . C B65 451 1_555 L MG MG . C MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc16 K OAA B65 . C B65 451 1_555 L MG MG . C MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc17 D OD2 ASP 50 D ASP 80 1_555 N MG MG . D MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc18 D OD2 ASP 54 D ASP 84 1_555 N MG MG . D MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc19 V O HOH . D HOH 395 1_555 N MG MG . D MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc20 M OAC B65 . D B65 451 1_555 N MG MG . D MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc21 M OAE B65 . D B65 451 1_555 N MG MG . D MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc22 E OE1 GLU 53 E GLU 83 1_555 P MG MG . E MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc23 E OE2 GLU 53 E GLU 83 1_555 P MG MG . E MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc24 E OH TYR 141 E TYR 171 1_555 P MG MG . E MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc25 O OAA B65 . E B65 451 1_555 P MG MG . E MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc26 F OD1 ASP 50 F ASP 80 1_555 R MG MG . F MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc27 F OD1 ASP 54 F ASP 84 1_555 R MG MG . F MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc28 Q OAC B65 . F B65 451 1_555 R MG MG . F MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc29 Q OAB B65 . F B65 451 1_555 R MG MG . F MG 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LEE _atom_sites.fract_transf_matrix[1][1] 0.011674 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000102 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 B65 A 1 451 451 B65 B65 . H 3 MG A 1 452 452 MG MG . I 2 B65 B 1 451 451 B65 B65 . J 3 MG B 1 452 452 MG MG . K 2 B65 C 1 451 451 B65 B65 . L 3 MG C 1 452 452 MG MG . M 2 B65 D 1 451 451 B65 B65 . N 3 MG D 1 452 452 MG MG . O 2 B65 E 1 451 451 B65 B65 . P 3 MG E 1 452 452 MG MG . Q 2 B65 F 1 451 451 B65 B65 . R 3 MG F 1 452 452 MG MG . S 4 HOH A 1 1 1 HOH HOH . S 4 HOH A 2 2 2 HOH HOH . S 4 HOH A 3 15 15 HOH HOH . S 4 HOH A 4 18 18 HOH HOH . S 4 HOH A 5 19 19 HOH HOH . S 4 HOH A 6 22 22 HOH HOH . S 4 HOH A 7 24 24 HOH HOH . S 4 HOH A 8 25 25 HOH HOH . S 4 HOH A 9 371 371 HOH HOH . S 4 HOH A 10 372 372 HOH HOH . S 4 HOH A 11 373 373 HOH HOH . S 4 HOH A 12 374 374 HOH HOH . S 4 HOH A 13 375 375 HOH HOH . S 4 HOH A 14 376 376 HOH HOH . S 4 HOH A 15 377 377 HOH HOH . S 4 HOH A 16 378 378 HOH HOH . S 4 HOH A 17 379 379 HOH HOH . S 4 HOH A 18 380 380 HOH HOH . S 4 HOH A 19 381 381 HOH HOH . S 4 HOH A 20 382 382 HOH HOH . S 4 HOH A 21 383 383 HOH HOH . S 4 HOH A 22 384 384 HOH HOH . S 4 HOH A 23 385 385 HOH HOH . S 4 HOH A 24 386 386 HOH HOH . S 4 HOH A 25 387 387 HOH HOH . S 4 HOH A 26 388 388 HOH HOH . S 4 HOH A 27 389 389 HOH HOH . S 4 HOH A 28 390 390 HOH HOH . S 4 HOH A 29 391 391 HOH HOH . S 4 HOH A 30 392 392 HOH HOH . S 4 HOH A 31 393 393 HOH HOH . S 4 HOH A 32 394 394 HOH HOH . S 4 HOH A 33 395 395 HOH HOH . S 4 HOH A 34 396 396 HOH HOH . S 4 HOH A 35 397 397 HOH HOH . S 4 HOH A 36 398 398 HOH HOH . T 4 HOH B 1 5 5 HOH HOH . T 4 HOH B 2 8 8 HOH HOH . T 4 HOH B 3 10 10 HOH HOH . T 4 HOH B 4 12 12 HOH HOH . T 4 HOH B 5 14 14 HOH HOH . T 4 HOH B 6 27 27 HOH HOH . T 4 HOH B 7 371 371 HOH HOH . T 4 HOH B 8 372 372 HOH HOH . T 4 HOH B 9 373 373 HOH HOH . T 4 HOH B 10 374 374 HOH HOH . T 4 HOH B 11 375 375 HOH HOH . T 4 HOH B 12 376 376 HOH HOH . T 4 HOH B 13 377 377 HOH HOH . T 4 HOH B 14 378 378 HOH HOH . T 4 HOH B 15 379 379 HOH HOH . T 4 HOH B 16 380 380 HOH HOH . T 4 HOH B 17 381 381 HOH HOH . T 4 HOH B 18 382 382 HOH HOH . T 4 HOH B 19 383 383 HOH HOH . T 4 HOH B 20 384 384 HOH HOH . T 4 HOH B 21 385 385 HOH HOH . T 4 HOH B 22 386 386 HOH HOH . T 4 HOH B 23 387 387 HOH HOH . T 4 HOH B 24 388 388 HOH HOH . T 4 HOH B 25 389 389 HOH HOH . T 4 HOH B 26 390 390 HOH HOH . T 4 HOH B 27 391 391 HOH HOH . T 4 HOH B 28 392 392 HOH HOH . T 4 HOH B 29 393 393 HOH HOH . T 4 HOH B 30 394 394 HOH HOH . T 4 HOH B 31 395 395 HOH HOH . T 4 HOH B 32 396 396 HOH HOH . T 4 HOH B 33 397 397 HOH HOH . T 4 HOH B 34 398 398 HOH HOH . T 4 HOH B 35 399 399 HOH HOH . T 4 HOH B 36 400 400 HOH HOH . T 4 HOH B 37 401 401 HOH HOH . T 4 HOH B 38 402 402 HOH HOH . T 4 HOH B 39 403 403 HOH HOH . T 4 HOH B 40 404 404 HOH HOH . T 4 HOH B 41 405 405 HOH HOH . T 4 HOH B 42 406 406 HOH HOH . T 4 HOH B 43 407 407 HOH HOH . T 4 HOH B 44 408 408 HOH HOH . T 4 HOH B 45 409 409 HOH HOH . T 4 HOH B 46 410 410 HOH HOH . U 4 HOH C 1 9 9 HOH HOH . U 4 HOH C 2 13 13 HOH HOH . U 4 HOH C 3 17 17 HOH HOH . U 4 HOH C 4 21 21 HOH HOH . U 4 HOH C 5 23 23 HOH HOH . U 4 HOH C 6 26 26 HOH HOH . U 4 HOH C 7 28 28 HOH HOH . U 4 HOH C 8 29 29 HOH HOH . U 4 HOH C 9 371 371 HOH HOH . U 4 HOH C 10 372 372 HOH HOH . U 4 HOH C 11 373 373 HOH HOH . U 4 HOH C 12 374 374 HOH HOH . U 4 HOH C 13 375 375 HOH HOH . U 4 HOH C 14 376 376 HOH HOH . U 4 HOH C 15 377 377 HOH HOH . U 4 HOH C 16 378 378 HOH HOH . U 4 HOH C 17 379 379 HOH HOH . U 4 HOH C 18 380 380 HOH HOH . U 4 HOH C 19 381 381 HOH HOH . U 4 HOH C 20 382 382 HOH HOH . U 4 HOH C 21 383 383 HOH HOH . U 4 HOH C 22 384 384 HOH HOH . U 4 HOH C 23 385 385 HOH HOH . U 4 HOH C 24 386 386 HOH HOH . U 4 HOH C 25 387 387 HOH HOH . U 4 HOH C 26 388 388 HOH HOH . U 4 HOH C 27 389 389 HOH HOH . U 4 HOH C 28 390 390 HOH HOH . U 4 HOH C 29 391 391 HOH HOH . U 4 HOH C 30 392 392 HOH HOH . U 4 HOH C 31 393 393 HOH HOH . U 4 HOH C 32 394 394 HOH HOH . U 4 HOH C 33 395 395 HOH HOH . U 4 HOH C 34 396 396 HOH HOH . U 4 HOH C 35 397 397 HOH HOH . U 4 HOH C 36 398 398 HOH HOH . U 4 HOH C 37 399 399 HOH HOH . V 4 HOH D 1 4 4 HOH HOH . V 4 HOH D 2 11 11 HOH HOH . V 4 HOH D 3 30 30 HOH HOH . V 4 HOH D 4 371 371 HOH HOH . V 4 HOH D 5 372 372 HOH HOH . V 4 HOH D 6 373 373 HOH HOH . V 4 HOH D 7 374 374 HOH HOH . V 4 HOH D 8 375 375 HOH HOH . V 4 HOH D 9 376 376 HOH HOH . V 4 HOH D 10 377 377 HOH HOH . V 4 HOH D 11 378 378 HOH HOH . V 4 HOH D 12 379 379 HOH HOH . V 4 HOH D 13 380 380 HOH HOH . V 4 HOH D 14 381 381 HOH HOH . V 4 HOH D 15 382 382 HOH HOH . V 4 HOH D 16 383 383 HOH HOH . V 4 HOH D 17 384 384 HOH HOH . V 4 HOH D 18 385 385 HOH HOH . V 4 HOH D 19 386 386 HOH HOH . V 4 HOH D 20 387 387 HOH HOH . V 4 HOH D 21 388 388 HOH HOH . V 4 HOH D 22 389 389 HOH HOH . V 4 HOH D 23 390 390 HOH HOH . V 4 HOH D 24 391 391 HOH HOH . V 4 HOH D 25 392 392 HOH HOH . V 4 HOH D 26 393 393 HOH HOH . V 4 HOH D 27 394 394 HOH HOH . V 4 HOH D 28 395 395 HOH HOH . W 4 HOH E 1 6 6 HOH HOH . W 4 HOH E 2 371 371 HOH HOH . W 4 HOH E 3 372 372 HOH HOH . W 4 HOH E 4 373 373 HOH HOH . W 4 HOH E 5 374 374 HOH HOH . W 4 HOH E 6 375 375 HOH HOH . W 4 HOH E 7 376 376 HOH HOH . W 4 HOH E 8 377 377 HOH HOH . W 4 HOH E 9 378 378 HOH HOH . W 4 HOH E 10 379 379 HOH HOH . W 4 HOH E 11 380 380 HOH HOH . W 4 HOH E 12 381 381 HOH HOH . W 4 HOH E 13 382 382 HOH HOH . W 4 HOH E 14 383 383 HOH HOH . W 4 HOH E 15 384 384 HOH HOH . W 4 HOH E 16 385 385 HOH HOH . W 4 HOH E 17 386 386 HOH HOH . W 4 HOH E 18 387 387 HOH HOH . W 4 HOH E 19 388 388 HOH HOH . W 4 HOH E 20 389 389 HOH HOH . X 4 HOH F 1 3 3 HOH HOH . X 4 HOH F 2 7 7 HOH HOH . X 4 HOH F 3 16 16 HOH HOH . X 4 HOH F 4 20 20 HOH HOH . X 4 HOH F 5 371 371 HOH HOH . X 4 HOH F 6 372 372 HOH HOH . X 4 HOH F 7 373 373 HOH HOH . X 4 HOH F 8 374 374 HOH HOH . X 4 HOH F 9 375 375 HOH HOH . X 4 HOH F 10 376 376 HOH HOH . X 4 HOH F 11 377 377 HOH HOH . X 4 HOH F 12 378 378 HOH HOH . X 4 HOH F 13 379 379 HOH HOH . X 4 HOH F 14 380 380 HOH HOH . X 4 HOH F 15 381 381 HOH HOH . X 4 HOH F 16 382 382 HOH HOH . X 4 HOH F 17 383 383 HOH HOH . X 4 HOH F 18 384 384 HOH HOH . X 4 HOH F 19 385 385 HOH HOH . X 4 HOH F 20 386 386 HOH HOH . X 4 HOH F 21 387 387 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 3 _atom_site.Cartn_x 11.328 _atom_site.Cartn_y -52.645 _atom_site.Cartn_z 101.959 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 81.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 452 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #