data_3LEI # _model_server_result.job_id C7WUuYwMV7pVRSyrhVCltw _model_server_result.datetime_utc '2024-10-13 09:16:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1186}' # _entry.id 3LEI # _exptl.entry_id 3LEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-L-fucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LEI _cell.length_a 67.01 _cell.length_b 67.01 _cell.length_c 97.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C CA CA . A CA 1 1_555 A O ARG 31 A ARG 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 C CA CA . A CA 1 1_555 A OD1 ASP 34 A ASP 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc3 C CA CA . A CA 1 1_555 A O ASN 36 A ASN 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 C CA CA . A CA 1 1_555 A OG SER 45 A SER 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc5 C CA CA . A CA 1 1_555 A O SER 45 A SER 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc6 C CA CA . A CA 1 1_555 A O ALA 139 A ALA 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc7 C CA CA . A CA 1 1_555 A OE1 GLU 140 A GLU 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc8 A NE2 HIS 43 A HIS 80 1_555 D NI NI . A NI 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc9 D NI NI . A NI 191 1_555 E O HOH . A HOH 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc10 D NI NI . A NI 191 1_555 E O HOH . A HOH 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc11 D NI NI . A NI 191 1_555 E O HOH . A HOH 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc12 D NI NI . A NI 191 1_555 E O HOH . A HOH 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc13 D NI NI . A NI 191 1_555 E O HOH . A HOH 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FUC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-fucopyranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-L-fucose;6-deoxy-alpha-L-galactopyranose;L-fucose;fucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FUC sing 83 n n C1 O1 FUC sing 84 n n C1 O5 FUC sing 85 n n C1 H1 FUC sing 86 n n C2 C3 FUC sing 87 n n C2 O2 FUC sing 88 n n C2 H2 FUC sing 89 n n C3 C4 FUC sing 90 n n C3 O3 FUC sing 91 n n C3 H3 FUC sing 92 n n C4 C5 FUC sing 93 n n C4 O4 FUC sing 94 n n C4 H4 FUC sing 95 n n C5 C6 FUC sing 96 n n C5 O5 FUC sing 97 n n C5 H5 FUC sing 98 n n C6 H61 FUC sing 99 n n C6 H62 FUC sing 100 n n C6 H63 FUC sing 101 n n O1 HO1 FUC sing 102 n n O2 HO2 FUC sing 103 n n O3 HO3 FUC sing 104 n n O4 HO4 FUC sing 105 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FUC LFucpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FUC a-L-fucopyranose 'COMMON NAME' GMML 1 FUC a-L-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FUC Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3LEI _atom_sites.fract_transf_matrix[1][1] 0.014923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FUC A 1 1186 1186 FUC FUC . C 3 CA A 1 1 1 CA CA . D 4 NI A 1 191 191 NI NI . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 3 3 HOH HOH . E 5 HOH A 3 4 4 HOH HOH . E 5 HOH A 4 5 5 HOH HOH . E 5 HOH A 5 6 6 HOH HOH . E 5 HOH A 6 7 7 HOH HOH . E 5 HOH A 7 8 8 HOH HOH . E 5 HOH A 8 9 9 HOH HOH . E 5 HOH A 9 10 10 HOH HOH . E 5 HOH A 10 11 11 HOH HOH . E 5 HOH A 11 12 12 HOH HOH . E 5 HOH A 12 13 13 HOH HOH . E 5 HOH A 13 14 14 HOH HOH . E 5 HOH A 14 15 15 HOH HOH . E 5 HOH A 15 16 16 HOH HOH . E 5 HOH A 16 17 17 HOH HOH . E 5 HOH A 17 18 18 HOH HOH . E 5 HOH A 18 19 19 HOH HOH . E 5 HOH A 19 20 20 HOH HOH . E 5 HOH A 20 21 21 HOH HOH . E 5 HOH A 21 22 22 HOH HOH . E 5 HOH A 22 23 23 HOH HOH . E 5 HOH A 23 24 24 HOH HOH . E 5 HOH A 24 25 25 HOH HOH . E 5 HOH A 25 26 26 HOH HOH . E 5 HOH A 26 27 27 HOH HOH . E 5 HOH A 27 28 28 HOH HOH . E 5 HOH A 28 29 29 HOH HOH . E 5 HOH A 29 30 30 HOH HOH . E 5 HOH A 30 31 31 HOH HOH . E 5 HOH A 31 32 32 HOH HOH . E 5 HOH A 32 33 33 HOH HOH . E 5 HOH A 33 34 34 HOH HOH . E 5 HOH A 34 35 35 HOH HOH . E 5 HOH A 35 36 36 HOH HOH . E 5 HOH A 36 192 192 HOH HOH . E 5 HOH A 37 193 193 HOH HOH . E 5 HOH A 38 194 194 HOH HOH . E 5 HOH A 39 195 195 HOH HOH . E 5 HOH A 40 196 196 HOH HOH . E 5 HOH A 41 197 197 HOH HOH . E 5 HOH A 42 198 198 HOH HOH . E 5 HOH A 43 199 199 HOH HOH . E 5 HOH A 44 200 200 HOH HOH . E 5 HOH A 45 201 201 HOH HOH . E 5 HOH A 46 202 202 HOH HOH . E 5 HOH A 47 203 203 HOH HOH . E 5 HOH A 48 204 204 HOH HOH . E 5 HOH A 49 205 205 HOH HOH . E 5 HOH A 50 206 206 HOH HOH . E 5 HOH A 51 207 207 HOH HOH . E 5 HOH A 52 208 208 HOH HOH . E 5 HOH A 53 209 209 HOH HOH . E 5 HOH A 54 210 210 HOH HOH . E 5 HOH A 55 211 211 HOH HOH . E 5 HOH A 56 212 212 HOH HOH . E 5 HOH A 57 213 213 HOH HOH . E 5 HOH A 58 214 214 HOH HOH . E 5 HOH A 59 215 215 HOH HOH . E 5 HOH A 60 216 216 HOH HOH . E 5 HOH A 61 217 217 HOH HOH . E 5 HOH A 62 218 218 HOH HOH . E 5 HOH A 63 219 219 HOH HOH . E 5 HOH A 64 220 220 HOH HOH . E 5 HOH A 65 221 221 HOH HOH . E 5 HOH A 66 222 222 HOH HOH . E 5 HOH A 67 223 223 HOH HOH . E 5 HOH A 68 224 224 HOH HOH . E 5 HOH A 69 225 225 HOH HOH . E 5 HOH A 70 226 226 HOH HOH . E 5 HOH A 71 227 227 HOH HOH . E 5 HOH A 72 228 228 HOH HOH . E 5 HOH A 73 229 229 HOH HOH . E 5 HOH A 74 230 230 HOH HOH . E 5 HOH A 75 231 231 HOH HOH . E 5 HOH A 76 232 232 HOH HOH . E 5 HOH A 77 233 233 HOH HOH . E 5 HOH A 78 234 234 HOH HOH . E 5 HOH A 79 235 235 HOH HOH . E 5 HOH A 80 236 236 HOH HOH . E 5 HOH A 81 237 237 HOH HOH . E 5 HOH A 82 238 238 HOH HOH . E 5 HOH A 83 239 239 HOH HOH . E 5 HOH A 84 240 240 HOH HOH . E 5 HOH A 85 241 241 HOH HOH . E 5 HOH A 86 242 242 HOH HOH . E 5 HOH A 87 243 243 HOH HOH . E 5 HOH A 88 244 244 HOH HOH . E 5 HOH A 89 245 245 HOH HOH . E 5 HOH A 90 246 246 HOH HOH . E 5 HOH A 91 247 247 HOH HOH . E 5 HOH A 92 248 248 HOH HOH . E 5 HOH A 93 249 249 HOH HOH . E 5 HOH A 94 250 250 HOH HOH . E 5 HOH A 95 251 251 HOH HOH . E 5 HOH A 96 252 252 HOH HOH . E 5 HOH A 97 253 253 HOH HOH . E 5 HOH A 98 254 254 HOH HOH . E 5 HOH A 99 255 255 HOH HOH . E 5 HOH A 100 256 256 HOH HOH . E 5 HOH A 101 257 257 HOH HOH . E 5 HOH A 102 258 258 HOH HOH . E 5 HOH A 103 259 259 HOH HOH . E 5 HOH A 104 260 260 HOH HOH . E 5 HOH A 105 261 261 HOH HOH . E 5 HOH A 106 262 262 HOH HOH . E 5 HOH A 107 263 263 HOH HOH . E 5 HOH A 108 264 264 HOH HOH . E 5 HOH A 109 265 265 HOH HOH . E 5 HOH A 110 266 266 HOH HOH . E 5 HOH A 111 267 267 HOH HOH . E 5 HOH A 112 268 268 HOH HOH . E 5 HOH A 113 269 269 HOH HOH . E 5 HOH A 114 270 270 HOH HOH . E 5 HOH A 115 271 271 HOH HOH . E 5 HOH A 116 272 272 HOH HOH . E 5 HOH A 117 273 273 HOH HOH . E 5 HOH A 118 274 274 HOH HOH . E 5 HOH A 119 275 275 HOH HOH . E 5 HOH A 120 276 276 HOH HOH . E 5 HOH A 121 277 277 HOH HOH . E 5 HOH A 122 278 278 HOH HOH . E 5 HOH A 123 279 279 HOH HOH . E 5 HOH A 124 280 280 HOH HOH . E 5 HOH A 125 281 281 HOH HOH . E 5 HOH A 126 282 282 HOH HOH . E 5 HOH A 127 283 283 HOH HOH . E 5 HOH A 128 284 284 HOH HOH . E 5 HOH A 129 285 285 HOH HOH . E 5 HOH A 130 286 286 HOH HOH . E 5 HOH A 131 287 287 HOH HOH . E 5 HOH A 132 288 288 HOH HOH . E 5 HOH A 133 289 289 HOH HOH . E 5 HOH A 134 290 290 HOH HOH . E 5 HOH A 135 291 291 HOH HOH . E 5 HOH A 136 292 292 HOH HOH . E 5 HOH A 137 293 293 HOH HOH . E 5 HOH A 138 294 294 HOH HOH . E 5 HOH A 139 295 295 HOH HOH . E 5 HOH A 140 296 296 HOH HOH . E 5 HOH A 141 297 297 HOH HOH . E 5 HOH A 142 298 298 HOH HOH . E 5 HOH A 143 299 299 HOH HOH . E 5 HOH A 144 300 300 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FUC . . . B 2 4.703 5.879 -16.393 0.6 29.31 ? C1 FUC 1186 A 1 HETATM 2 C C2 FUC . . . B 2 5.447 7.162 -16.045 0.6 28.91 ? C2 FUC 1186 A 1 HETATM 3 C C3 FUC . . . B 2 5.511 8.104 -17.242 0.6 26.32 ? C3 FUC 1186 A 1 HETATM 4 C C4 FUC . . . B 2 4.099 8.327 -17.787 0.6 24.44 ? C4 FUC 1186 A 1 HETATM 5 C C5 FUC . . . B 2 3.413 6.968 -18.013 0.6 24.42 ? C5 FUC 1186 A 1 HETATM 6 C C6 FUC . . . B 2 2.009 7.045 -18.602 0.6 21.44 ? C6 FUC 1186 A 1 HETATM 7 O O1 FUC . . . B 2 4.708 5.035 -15.254 0.6 30.35 ? O1 FUC 1186 A 1 HETATM 8 O O2 FUC . . . B 2 6.739 6.88 -15.57 0.6 31.81 ? O2 FUC 1186 A 1 HETATM 9 O O3 FUC . . . B 2 6.076 9.299 -16.749 0.6 24.28 ? O3 FUC 1186 A 1 HETATM 10 O O4 FUC . . . B 2 3.37 9.103 -16.867 0.6 22.57 ? O4 FUC 1186 A 1 HETATM 11 O O5 FUC . . . B 2 3.387 6.234 -16.805 0.6 25.98 ? O5 FUC 1186 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #