data_3LEV # _model_server_result.job_id Ya84GabRonthtLmjZVtDgQ _model_server_result.datetime_utc '2024-10-12 16:37:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":219}' # _entry.id 3LEV # _exptl.entry_id 3LEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LEV _cell.length_a 58.506 _cell.length_b 63.933 _cell.length_c 200.019 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,G 2 1 B,C,D,E,F,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 C SG CYS 159 H CYS 140 1_555 C SG CYS 215 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 107 n n PG O2G ATP sing 108 n n PG O3G ATP sing 109 n n PG O3B ATP sing 110 n n O2G HOG2 ATP sing 111 n n O3G HOG3 ATP sing 112 n n PB O1B ATP doub 113 n n PB O2B ATP sing 114 n n PB O3B ATP sing 115 n n PB O3A ATP sing 116 n n O2B HOB2 ATP sing 117 n n PA O1A ATP doub 118 n n PA O2A ATP sing 119 n n PA O3A ATP sing 120 n n PA O5' ATP sing 121 n n O2A HOA2 ATP sing 122 n n O5' C5' ATP sing 123 n n C5' C4' ATP sing 124 n n C5' "H5'1" ATP sing 125 n n C5' "H5'2" ATP sing 126 n n C4' O4' ATP sing 127 n n C4' C3' ATP sing 128 n n C4' H4' ATP sing 129 n n O4' C1' ATP sing 130 n n C3' O3' ATP sing 131 n n C3' C2' ATP sing 132 n n C3' H3' ATP sing 133 n n O3' HO3' ATP sing 134 n n C2' O2' ATP sing 135 n n C2' C1' ATP sing 136 n n C2' H2' ATP sing 137 n n O2' HO2' ATP sing 138 n n C1' N9 ATP sing 139 n n C1' H1' ATP sing 140 n n N9 C8 ATP sing 141 n y N9 C4 ATP sing 142 n y C8 N7 ATP doub 143 n y C8 H8 ATP sing 144 n n N7 C5 ATP sing 145 n y C5 C6 ATP sing 146 n y C5 C4 ATP doub 147 n y C6 N6 ATP sing 148 n n C6 N1 ATP doub 149 n y N6 HN61 ATP sing 150 n n N6 HN62 ATP sing 151 n n N1 C2 ATP sing 152 n y C2 N3 ATP doub 153 n y C2 H2 ATP sing 154 n n N3 C4 ATP sing 155 n y # _atom_sites.entry_id 3LEV _atom_sites.fract_transf_matrix[1][1] 0.017092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 1PE L 1 215 215 1PE 1PE . E 5 ATP H 1 219 219 ATP ATP . F 6 GOL H 1 220 220 GOL GOL . G 7 HOH A 1 272 272 HOH HOH . G 7 HOH A 2 273 273 HOH HOH . G 7 HOH A 3 274 274 HOH HOH . G 7 HOH A 4 275 275 HOH HOH . G 7 HOH A 5 276 276 HOH HOH . G 7 HOH A 6 279 279 HOH HOH . G 7 HOH A 7 280 280 HOH HOH . G 7 HOH A 8 281 281 HOH HOH . G 7 HOH A 9 282 282 HOH HOH . H 7 HOH L 1 216 216 HOH HOH . H 7 HOH L 2 217 217 HOH HOH . H 7 HOH L 3 218 218 HOH HOH . H 7 HOH L 4 219 219 HOH HOH . H 7 HOH L 5 220 220 HOH HOH . H 7 HOH L 6 221 221 HOH HOH . H 7 HOH L 7 222 222 HOH HOH . H 7 HOH L 8 223 223 HOH HOH . H 7 HOH L 9 224 224 HOH HOH . H 7 HOH L 10 225 225 HOH HOH . H 7 HOH L 11 226 226 HOH HOH . H 7 HOH L 12 227 227 HOH HOH . H 7 HOH L 13 228 228 HOH HOH . H 7 HOH L 14 229 229 HOH HOH . H 7 HOH L 15 230 230 HOH HOH . H 7 HOH L 16 231 231 HOH HOH . H 7 HOH L 17 232 232 HOH HOH . H 7 HOH L 18 233 233 HOH HOH . H 7 HOH L 19 234 234 HOH HOH . H 7 HOH L 20 235 235 HOH HOH . H 7 HOH L 21 236 236 HOH HOH . H 7 HOH L 22 237 237 HOH HOH . H 7 HOH L 23 238 238 HOH HOH . H 7 HOH L 24 240 240 HOH HOH . H 7 HOH L 25 241 241 HOH HOH . H 7 HOH L 26 242 242 HOH HOH . H 7 HOH L 27 243 243 HOH HOH . H 7 HOH L 28 276 276 HOH HOH . I 7 HOH H 1 221 221 HOH HOH . I 7 HOH H 2 222 222 HOH HOH . I 7 HOH H 3 223 223 HOH HOH . I 7 HOH H 4 224 224 HOH HOH . I 7 HOH H 5 225 225 HOH HOH . I 7 HOH H 6 226 226 HOH HOH . I 7 HOH H 7 227 227 HOH HOH . I 7 HOH H 8 228 228 HOH HOH . I 7 HOH H 9 229 229 HOH HOH . I 7 HOH H 10 230 230 HOH HOH . I 7 HOH H 11 231 231 HOH HOH . I 7 HOH H 12 232 232 HOH HOH . I 7 HOH H 13 233 233 HOH HOH . I 7 HOH H 14 234 234 HOH HOH . I 7 HOH H 15 235 235 HOH HOH . I 7 HOH H 16 236 236 HOH HOH . I 7 HOH H 17 237 237 HOH HOH . I 7 HOH H 18 238 238 HOH HOH . I 7 HOH H 19 239 239 HOH HOH . I 7 HOH H 20 240 240 HOH HOH . I 7 HOH H 21 241 241 HOH HOH . I 7 HOH H 22 242 242 HOH HOH . I 7 HOH H 23 243 243 HOH HOH . I 7 HOH H 24 244 244 HOH HOH . I 7 HOH H 25 245 245 HOH HOH . I 7 HOH H 26 246 246 HOH HOH . I 7 HOH H 27 247 247 HOH HOH . I 7 HOH H 28 248 248 HOH HOH . I 7 HOH H 29 249 249 HOH HOH . I 7 HOH H 30 250 250 HOH HOH . I 7 HOH H 31 251 251 HOH HOH . I 7 HOH H 32 252 252 HOH HOH . I 7 HOH H 33 253 253 HOH HOH . I 7 HOH H 34 254 254 HOH HOH . I 7 HOH H 35 255 255 HOH HOH . I 7 HOH H 36 257 257 HOH HOH . I 7 HOH H 37 258 258 HOH HOH . I 7 HOH H 38 259 259 HOH HOH . I 7 HOH H 39 260 260 HOH HOH . I 7 HOH H 40 261 261 HOH HOH . I 7 HOH H 41 262 262 HOH HOH . I 7 HOH H 42 264 264 HOH HOH . I 7 HOH H 43 265 265 HOH HOH . I 7 HOH H 44 266 266 HOH HOH . I 7 HOH H 45 267 267 HOH HOH . I 7 HOH H 46 268 268 HOH HOH . I 7 HOH H 47 269 269 HOH HOH . I 7 HOH H 48 270 270 HOH HOH . I 7 HOH H 49 271 271 HOH HOH . I 7 HOH H 50 272 272 HOH HOH . I 7 HOH H 51 273 273 HOH HOH . I 7 HOH H 52 274 274 HOH HOH . I 7 HOH H 53 275 275 HOH HOH . I 7 HOH H 54 277 277 HOH HOH . I 7 HOH H 55 278 278 HOH HOH . I 7 HOH H 56 283 283 HOH HOH . I 7 HOH H 57 284 284 HOH HOH . I 7 HOH H 58 285 285 HOH HOH . I 7 HOH H 59 286 286 HOH HOH . I 7 HOH H 60 287 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . A . E 5 -10.919 -16.277 -13.612 0.5 211.34 ? PG ATP 219 H 1 HETATM 2 P PG ATP . B . E 5 -9.659 -16.151 -14.457 0.5 207.4 ? PG ATP 219 H 1 HETATM 3 O O1G ATP . A . E 5 -10.026 -17.459 -13.904 0.5 206.89 ? O1G ATP 219 H 1 HETATM 4 O O1G ATP . B . E 5 -9.672 -17.408 -15.23 0.5 205.46 ? O1G ATP 219 H 1 HETATM 5 O O2G ATP . A . E 5 -11.688 -15.772 -14.809 0.5 213.37 ? O2G ATP 219 H 1 HETATM 6 O O2G ATP . B . E 5 -8.682 -16.131 -13.317 0.5 205.44 ? O2G ATP 219 H 1 HETATM 7 O O3G ATP . A . E 5 -10.263 -15.189 -12.797 0.5 213.4 ? O3G ATP 219 H 1 HETATM 8 O O3G ATP . B . E 5 -9.629 -14.948 -15.299 0.5 206.6 ? O3G ATP 219 H 1 HETATM 9 P PB ATP . A . E 5 -11.704 -17.421 -11.17 0.5 219.96 ? PB ATP 219 H 1 HETATM 10 P PB ATP . B . E 5 -11.5 -16.012 -12.132 0.5 217.34 ? PB ATP 219 H 1 HETATM 11 O O1B ATP . A . E 5 -10.624 -18.468 -11.315 0.5 217.78 ? O1B ATP 219 H 1 HETATM 12 O O1B ATP . B . E 5 -10.467 -15.225 -11.41 0.5 214.95 ? O1B ATP 219 H 1 HETATM 13 O O2B ATP . A . E 5 -11.477 -16.229 -10.271 0.5 221.21 ? O2B ATP 219 H 1 HETATM 14 O O2B ATP . B . E 5 -12.865 -15.481 -12.039 0.5 217.56 ? O2B ATP 219 H 1 HETATM 15 O O3B ATP . A . E 5 -12.061 -16.873 -12.643 0.5 218.65 ? O3B ATP 219 H 1 HETATM 16 O O3B ATP . B . E 5 -11.074 -16.08 -13.693 0.5 212.74 ? O3B ATP 219 H 1 HETATM 17 P PA ATP . A . E 5 -13.153 -18.978 -9.323 0.5 165.29 ? PA ATP 219 H 1 HETATM 18 P PA ATP . B . E 5 -11.366 -18.078 -10.142 0.5 219.3 ? PA ATP 219 H 1 HETATM 19 O O1A ATP . A . E 5 -13.931 -18.153 -8.327 0.5 164.11 ? O1A ATP 219 H 1 HETATM 20 O O1A ATP . B . E 5 -9.986 -18.523 -9.875 0.5 217.99 ? O1A ATP 219 H 1 HETATM 21 O O2A ATP . A . E 5 -11.764 -19.47 -8.994 0.5 165.16 ? O2A ATP 219 H 1 HETATM 22 O O2A ATP . B . E 5 -11.947 -17.065 -9.261 0.5 220.16 ? O2A ATP 219 H 1 HETATM 23 O O3A ATP . A . E 5 -13.065 -18.159 -10.712 0.5 161.62 ? O3A ATP 219 H 1 HETATM 24 O O3A ATP . B . E 5 -11.46 -17.523 -11.628 0.5 218.76 ? O3A ATP 219 H 1 HETATM 25 O O5' ATP . A . E 5 -14.041 -20.256 -9.746 0.5 157.22 ? O5' ATP 219 H 1 HETATM 26 O O5' ATP . B . E 5 -12.267 -19.417 -10.036 0.5 164.82 ? O5' ATP 219 H 1 HETATM 27 C C5' ATP . A . E 5 -13.559 -21.582 -9.54 0.5 150.68 ? C5' ATP 219 H 1 HETATM 28 C C5' ATP . B . E 5 -13.629 -19.553 -10.499 0.5 160.96 ? C5' ATP 219 H 1 HETATM 29 C C4' ATP . A . E 5 -12.693 -21.909 -10.75 0.5 147.5 ? C4' ATP 219 H 1 HETATM 30 C C4' ATP . B . E 5 -13.721 -20.761 -11.399 0.5 152.38 ? C4' ATP 219 H 1 HETATM 31 O O4' ATP . A . E 5 -12.125 -23.218 -10.688 0.5 140.54 ? O4' ATP 219 H 1 HETATM 32 O O4' ATP . B . E 5 -13.088 -21.772 -10.628 0.5 149.05 ? O4' ATP 219 H 1 HETATM 33 C C3' ATP . A . E 5 -13.438 -21.853 -12.078 0.5 147.4 ? C3' ATP 219 H 1 HETATM 34 C C3' ATP . B . E 5 -15.081 -21.378 -11.809 0.5 149.6 ? C3' ATP 219 H 1 HETATM 35 O O3' ATP . A . E 5 -13.386 -20.541 -12.645 0.5 150.86 ? O3' ATP 219 H 1 HETATM 36 O O3' ATP . B . E 5 -15.031 -22.34 -12.861 0.5 146.63 ? O3' ATP 219 H 1 HETATM 37 C C2' ATP . A . E 5 -12.694 -22.836 -12.962 0.5 136.36 ? C2' ATP 219 H 1 HETATM 38 C C2' ATP . B . E 5 -15.356 -22.178 -10.554 0.5 147.81 ? C2' ATP 219 H 1 HETATM 39 O O2' ATP . A . E 5 -11.974 -22.133 -13.978 0.5 127.17 ? O2' ATP 219 H 1 HETATM 40 O O2' ATP . B . E 5 -16.247 -23.276 -10.688 0.5 146.36 ? O2' ATP 219 H 1 HETATM 41 C C1' ATP . A . E 5 -11.733 -23.554 -12.022 0.5 135.95 ? C1' ATP 219 H 1 HETATM 42 C C1' ATP . B . E 5 -14.008 -22.836 -10.364 0.5 144.78 ? C1' ATP 219 H 1 HETATM 43 N N9 ATP . A . E 5 -11.777 -25.017 -12.261 0.5 132.29 ? N9 ATP 219 H 1 HETATM 44 N N9 ATP . B . E 5 -13.901 -23.367 -8.958 0.5 138.32 ? N9 ATP 219 H 1 HETATM 45 C C8 ATP . A . E 5 -12.417 -25.618 -13.282 0.5 131.37 ? C8 ATP 219 H 1 HETATM 46 C C8 ATP . B . E 5 -14.196 -22.71 -7.769 0.5 135.71 ? C8 ATP 219 H 1 HETATM 47 N N7 ATP . A . E 5 -12.257 -26.963 -13.234 0.5 128.48 ? N7 ATP 219 H 1 HETATM 48 N N7 ATP . B . E 5 -14.118 -23.485 -6.712 0.5 132.89 ? N7 ATP 219 H 1 HETATM 49 C C5 ATP . A . E 5 -11.488 -27.237 -12.166 0.5 126.25 ? C5 ATP 219 H 1 HETATM 50 C C5 ATP . B . E 5 -13.882 -24.77 -7.239 0.5 132.15 ? C5 ATP 219 H 1 HETATM 51 C C6 ATP . A . E 5 -10.941 -28.46 -11.542 0.5 121.89 ? C6 ATP 219 H 1 HETATM 52 C C6 ATP . B . E 5 -13.765 -26.04 -6.592 0.5 129.59 ? C6 ATP 219 H 1 HETATM 53 N N6 ATP . A . E 5 -11.202 -29.677 -12.08 0.5 118.75 ? N6 ATP 219 H 1 HETATM 54 N N6 ATP . B . E 5 -14.019 -26.284 -5.302 0.5 128.29 ? N6 ATP 219 H 1 HETATM 55 N N1 ATP . A . E 5 -10.182 -28.314 -10.432 0.5 121.84 ? N1 ATP 219 H 1 HETATM 56 N N1 ATP . B . E 5 -13.354 -27.066 -7.406 0.5 129.95 ? N1 ATP 219 H 1 HETATM 57 C C2 ATP . A . E 5 -9.926 -27.104 -9.899 0.5 123.89 ? C2 ATP 219 H 1 HETATM 58 C C2 ATP . B . E 5 -13.096 -26.774 -8.734 0.5 131.38 ? C2 ATP 219 H 1 HETATM 59 N N3 ATP . A . E 5 -10.392 -25.951 -10.413 0.5 126.77 ? N3 ATP 219 H 1 HETATM 60 N N3 ATP . B . E 5 -13.396 -25.7 -9.463 0.5 133.02 ? N3 ATP 219 H 1 HETATM 61 C C4 ATP . A . E 5 -11.162 -25.951 -11.53 0.5 128.62 ? C4 ATP 219 H 1 HETATM 62 C C4 ATP . B . E 5 -13.671 -24.69 -8.605 0.5 134.74 ? C4 ATP 219 H 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 62 #