data_3LEV # _model_server_result.job_id BsS3x9exK_RFwc2F31-U-g _model_server_result.datetime_utc '2024-10-12 16:36:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":220}' # _entry.id 3LEV # _exptl.entry_id 3LEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LEV _cell.length_a 58.506 _cell.length_b 63.933 _cell.length_c 200.019 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,G 2 1 B,C,D,E,F,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 97 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 C SG CYS 159 H CYS 140 1_555 C SG CYS 215 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 215 n n C1 C2 GOL sing 216 n n C1 H11 GOL sing 217 n n C1 H12 GOL sing 218 n n O1 HO1 GOL sing 219 n n C2 O2 GOL sing 220 n n C2 C3 GOL sing 221 n n C2 H2 GOL sing 222 n n O2 HO2 GOL sing 223 n n C3 O3 GOL sing 224 n n C3 H31 GOL sing 225 n n C3 H32 GOL sing 226 n n O3 HO3 GOL sing 227 n n # _atom_sites.entry_id 3LEV _atom_sites.fract_transf_matrix[1][1] 0.017092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 1PE L 1 215 215 1PE 1PE . E 5 ATP H 1 219 219 ATP ATP . F 6 GOL H 1 220 220 GOL GOL . G 7 HOH A 1 272 272 HOH HOH . G 7 HOH A 2 273 273 HOH HOH . G 7 HOH A 3 274 274 HOH HOH . G 7 HOH A 4 275 275 HOH HOH . G 7 HOH A 5 276 276 HOH HOH . G 7 HOH A 6 279 279 HOH HOH . G 7 HOH A 7 280 280 HOH HOH . G 7 HOH A 8 281 281 HOH HOH . G 7 HOH A 9 282 282 HOH HOH . H 7 HOH L 1 216 216 HOH HOH . H 7 HOH L 2 217 217 HOH HOH . H 7 HOH L 3 218 218 HOH HOH . H 7 HOH L 4 219 219 HOH HOH . H 7 HOH L 5 220 220 HOH HOH . H 7 HOH L 6 221 221 HOH HOH . H 7 HOH L 7 222 222 HOH HOH . H 7 HOH L 8 223 223 HOH HOH . H 7 HOH L 9 224 224 HOH HOH . H 7 HOH L 10 225 225 HOH HOH . H 7 HOH L 11 226 226 HOH HOH . H 7 HOH L 12 227 227 HOH HOH . H 7 HOH L 13 228 228 HOH HOH . H 7 HOH L 14 229 229 HOH HOH . H 7 HOH L 15 230 230 HOH HOH . H 7 HOH L 16 231 231 HOH HOH . H 7 HOH L 17 232 232 HOH HOH . H 7 HOH L 18 233 233 HOH HOH . H 7 HOH L 19 234 234 HOH HOH . H 7 HOH L 20 235 235 HOH HOH . H 7 HOH L 21 236 236 HOH HOH . H 7 HOH L 22 237 237 HOH HOH . H 7 HOH L 23 238 238 HOH HOH . H 7 HOH L 24 240 240 HOH HOH . H 7 HOH L 25 241 241 HOH HOH . H 7 HOH L 26 242 242 HOH HOH . H 7 HOH L 27 243 243 HOH HOH . H 7 HOH L 28 276 276 HOH HOH . I 7 HOH H 1 221 221 HOH HOH . I 7 HOH H 2 222 222 HOH HOH . I 7 HOH H 3 223 223 HOH HOH . I 7 HOH H 4 224 224 HOH HOH . I 7 HOH H 5 225 225 HOH HOH . I 7 HOH H 6 226 226 HOH HOH . I 7 HOH H 7 227 227 HOH HOH . I 7 HOH H 8 228 228 HOH HOH . I 7 HOH H 9 229 229 HOH HOH . I 7 HOH H 10 230 230 HOH HOH . I 7 HOH H 11 231 231 HOH HOH . I 7 HOH H 12 232 232 HOH HOH . I 7 HOH H 13 233 233 HOH HOH . I 7 HOH H 14 234 234 HOH HOH . I 7 HOH H 15 235 235 HOH HOH . I 7 HOH H 16 236 236 HOH HOH . I 7 HOH H 17 237 237 HOH HOH . I 7 HOH H 18 238 238 HOH HOH . I 7 HOH H 19 239 239 HOH HOH . I 7 HOH H 20 240 240 HOH HOH . I 7 HOH H 21 241 241 HOH HOH . I 7 HOH H 22 242 242 HOH HOH . I 7 HOH H 23 243 243 HOH HOH . I 7 HOH H 24 244 244 HOH HOH . I 7 HOH H 25 245 245 HOH HOH . I 7 HOH H 26 246 246 HOH HOH . I 7 HOH H 27 247 247 HOH HOH . I 7 HOH H 28 248 248 HOH HOH . I 7 HOH H 29 249 249 HOH HOH . I 7 HOH H 30 250 250 HOH HOH . I 7 HOH H 31 251 251 HOH HOH . I 7 HOH H 32 252 252 HOH HOH . I 7 HOH H 33 253 253 HOH HOH . I 7 HOH H 34 254 254 HOH HOH . I 7 HOH H 35 255 255 HOH HOH . I 7 HOH H 36 257 257 HOH HOH . I 7 HOH H 37 258 258 HOH HOH . I 7 HOH H 38 259 259 HOH HOH . I 7 HOH H 39 260 260 HOH HOH . I 7 HOH H 40 261 261 HOH HOH . I 7 HOH H 41 262 262 HOH HOH . I 7 HOH H 42 264 264 HOH HOH . I 7 HOH H 43 265 265 HOH HOH . I 7 HOH H 44 266 266 HOH HOH . I 7 HOH H 45 267 267 HOH HOH . I 7 HOH H 46 268 268 HOH HOH . I 7 HOH H 47 269 269 HOH HOH . I 7 HOH H 48 270 270 HOH HOH . I 7 HOH H 49 271 271 HOH HOH . I 7 HOH H 50 272 272 HOH HOH . I 7 HOH H 51 273 273 HOH HOH . I 7 HOH H 52 274 274 HOH HOH . I 7 HOH H 53 275 275 HOH HOH . I 7 HOH H 54 277 277 HOH HOH . I 7 HOH H 55 278 278 HOH HOH . I 7 HOH H 56 283 283 HOH HOH . I 7 HOH H 57 284 284 HOH HOH . I 7 HOH H 58 285 285 HOH HOH . I 7 HOH H 59 286 286 HOH HOH . I 7 HOH H 60 287 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 13.463 -32.637 5.578 1 125.32 ? C1 GOL 220 H 1 HETATM 2 O O1 GOL . . . F 6 13.716 -31.453 6.306 1 128.91 ? O1 GOL 220 H 1 HETATM 3 C C2 GOL . . . F 6 12.499 -32.36 4.425 1 118.17 ? C2 GOL 220 H 1 HETATM 4 O O2 GOL . . . F 6 12.054 -31.021 4.474 1 112.27 ? O2 GOL 220 H 1 HETATM 5 C C3 GOL . . . F 6 11.294 -33.293 4.5 1 116.07 ? C3 GOL 220 H 1 HETATM 6 O O3 GOL . . . F 6 10.452 -32.912 5.567 1 113.13 ? O3 GOL 220 H 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #