data_3LFD
#
_model_server_result.job_id            z_tVXKPQovPNLpmBEIEBRw 
_model_server_result.datetime_utc      '2024-10-11 01:26:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lfd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":361}' 
#
_entry.id    3LFD 
#
_exptl.entry_id    3LFD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              489.632 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-{4-[2-(benzyloxy)ethyl]-1,3-thiazol-2-yl}-3-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]urea 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LFD 
_cell.length_a            67.95 
_cell.length_b            69.85 
_cell.length_c            74.71 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LFD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H31 N5 O2 S' 
_chem_comp.formula_weight    489.632 
_chem_comp.id                Z85 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-{4-[2-(benzyloxy)ethyl]-1,3-thiazol-2-yl}-3-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-(4-(2-(benzyloxy)ethyl)thiazol-2-yl)-3-(3-tert-butyl-1-p-tolyl-1H-pyrazol-5-yl)urea 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CBA CAA Z85 sing 422 n n 
CAA HAA Z85 sing 423 n n 
CAA HAAA Z85 sing 424 n n 
CAA HAAB Z85 sing 425 n n 
CBI CAB Z85 sing 426 n n 
CAB HAB Z85 sing 427 n n 
CAB HABA Z85 sing 428 n n 
CAB HABB Z85 sing 429 n n 
CAC CBI Z85 sing 430 n n 
CAC HAC Z85 sing 431 n n 
CAC HACA Z85 sing 432 n n 
CAC HACB Z85 sing 433 n n 
CAD CBI Z85 sing 434 n n 
CAD HAD Z85 sing 435 n n 
CAD HADA Z85 sing 436 n n 
CAD HADB Z85 sing 437 n n 
OAE CAZ Z85 doub 438 n n 
CAH CAF Z85 doub 439 n y 
CAF CAG Z85 sing 440 n y 
CAF HAF Z85 sing 441 n n 
CAI CAG Z85 doub 442 n y 
CAG HAG Z85 sing 443 n n 
CAJ CAH Z85 sing 444 n y 
CAH HAH Z85 sing 445 n n 
CBB CAI Z85 sing 446 n y 
CAI HAI Z85 sing 447 n n 
CAJ CBB Z85 doub 448 n y 
CAJ HAJ Z85 sing 449 n n 
CAM CAK Z85 doub 450 n y 
CAK CBA Z85 sing 451 n y 
CAK HAK Z85 sing 452 n n 
CAN CAL Z85 sing 453 n y 
CAL CBA Z85 doub 454 n y 
CAL HAL Z85 sing 455 n n 
CBD CAM Z85 sing 456 n y 
CAM HAM Z85 sing 457 n n 
CBD CAN Z85 doub 458 n y 
CAN HAN Z85 sing 459 n n 
SAY CAO Z85 sing 460 n y 
CAO CBC Z85 doub 461 n y 
CAO HAO Z85 sing 462 n n 
CAP CBF Z85 sing 463 n y 
CAP CBE Z85 doub 464 n y 
CAP HAP Z85 sing 465 n n 
OAX CAQ Z85 sing 466 n n 
CAQ CAR Z85 sing 467 n n 
CAQ HAQ Z85 sing 468 n n 
CAQ HAQA Z85 sing 469 n n 
CBC CAR Z85 sing 470 n n 
CAR HAR Z85 sing 471 n n 
CAR HARA Z85 sing 472 n n 
CAS CBB Z85 sing 473 n n 
CAS OAX Z85 sing 474 n n 
CAS HAS Z85 sing 475 n n 
CAS HASA Z85 sing 476 n n 
CBC NAT Z85 sing 477 n y 
CBG NAT Z85 doub 478 n y 
CBF NAU Z85 doub 479 n y 
NAU NBH Z85 sing 480 n y 
CAZ NAV Z85 sing 481 n n 
NAV CBE Z85 sing 482 n n 
NAV HNAV Z85 sing 483 n n 
CBG NAW Z85 sing 484 n n 
NAW CAZ Z85 sing 485 n n 
NAW HNAW Z85 sing 486 n n 
SAY CBG Z85 sing 487 n y 
NBH CBD Z85 sing 488 n y 
CBE NBH Z85 sing 489 n y 
CBI CBF Z85 sing 490 n n 
#
_atom_sites.entry_id                     3LFD 
_atom_sites.fract_transf_matrix[1][1]    0.014717 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014316 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013385 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 Z85 A 1 361 1 Z85 Z85 . 
C 3 BOG A 1 1000 1000 BOG BOG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Z85 . . . B 2 19.495 -7.06 -10.358 1 42.7 ? CAA Z85 361 A 1 
HETATM 2 C CAB Z85 . . . B 2 13.714 -8.629 -16.889 1 38.44 ? CAB Z85 361 A 1 
HETATM 3 C CAC Z85 . . . B 2 14.385 -7.438 -18.967 1 38.49 ? CAC Z85 361 A 1 
HETATM 4 C CAD Z85 . . . B 2 15.28 -9.73 -18.511 1 38.29 ? CAD Z85 361 A 1 
HETATM 5 O OAE Z85 . . . B 2 17.869 -4.283 -17.711 1 38.8 ? OAE Z85 361 A 1 
HETATM 6 C CAF Z85 . . . B 2 23.784 -4.872 -20.862 1 39.32 ? CAF Z85 361 A 1 
HETATM 7 C CAG Z85 . . . B 2 22.669 -4.203 -20.368 1 38.66 ? CAG Z85 361 A 1 
HETATM 8 C CAH Z85 . . . B 2 24.857 -4.164 -21.413 1 39.59 ? CAH Z85 361 A 1 
HETATM 9 C CAI Z85 . . . B 2 22.639 -2.815 -20.431 1 39.09 ? CAI Z85 361 A 1 
HETATM 10 C CAJ Z85 . . . B 2 24.822 -2.772 -21.472 1 39.4 ? CAJ Z85 361 A 1 
HETATM 11 C CAK Z85 . . . B 2 17.511 -7.006 -11.954 1 42.49 ? CAK Z85 361 A 1 
HETATM 12 C CAL Z85 . . . B 2 19.742 -7.298 -12.856 1 42.08 ? CAL Z85 361 A 1 
HETATM 13 C CAM Z85 . . . B 2 16.984 -7.066 -13.247 1 42.04 ? CAM Z85 361 A 1 
HETATM 14 C CAN Z85 . . . B 2 19.208 -7.361 -14.141 1 41.87 ? CAN Z85 361 A 1 
HETATM 15 C CAO Z85 . . . B 2 20.429 -0.674 -18.786 1 38.3 ? CAO Z85 361 A 1 
HETATM 16 C CAP Z85 . . . B 2 17.009 -7.066 -17.707 1 39.51 ? CAP Z85 361 A 1 
HETATM 17 C CAQ Z85 . . . B 2 23.375 0.403 -18.934 1 39.09 ? CAQ Z85 361 A 1 
HETATM 18 C CAR Z85 . . . B 2 22.615 -0.034 -17.672 1 38.84 ? CAR Z85 361 A 1 
HETATM 19 C CAS Z85 . . . B 2 23.668 -0.707 -21.034 1 39.66 ? CAS Z85 361 A 1 
HETATM 20 N NAT Z85 . . . B 2 21.394 -2.225 -17.431 1 38.37 ? NAT Z85 361 A 1 
HETATM 21 N NAU Z85 . . . B 2 16.284 -7.917 -15.847 1 39.85 ? NAU Z85 361 A 1 
HETATM 22 N NAV Z85 . . . B 2 18.92 -6.032 -16.796 1 38.95 ? NAV Z85 361 A 1 
HETATM 23 N NAW Z85 . . . B 2 20.096 -4.193 -17.348 1 39.13 ? NAW Z85 361 A 1 
HETATM 24 O OAX Z85 . . . B 2 22.759 0.038 -20.19 1 39.83 ? OAX Z85 361 A 1 
HETATM 25 S SAY Z85 . . . B 2 19.401 -2.003 -18.837 1 38.56 ? SAY Z85 361 A 1 
HETATM 26 C CAZ Z85 . . . B 2 18.907 -4.802 -17.302 1 38.98 ? CAZ Z85 361 A 1 
HETATM 27 C CBA Z85 . . . B 2 18.895 -7.122 -11.764 1 42.59 ? CBA Z85 361 A 1 
HETATM 28 C CBB Z85 . . . B 2 23.708 -2.099 -20.978 1 39.43 ? CBB Z85 361 A 1 
HETATM 29 C CBC Z85 . . . B 2 21.457 -0.99 -17.973 1 38.53 ? CBC Z85 361 A 1 
HETATM 30 C CBD Z85 . . . B 2 17.833 -7.237 -14.35 1 41.34 ? CBD Z85 361 A 1 
HETATM 31 C CBE Z85 . . . B 2 17.811 -6.759 -16.697 1 39.55 ? CBE Z85 361 A 1 
HETATM 32 C CBF Z85 . . . B 2 16.049 -7.792 -17.15 1 39.06 ? CBF Z85 361 A 1 
HETATM 33 C CBG Z85 . . . B 2 20.329 -2.945 -17.788 1 38.79 ? CBG Z85 361 A 1 
HETATM 34 N NBH Z85 . . . B 2 17.32 -7.304 -15.584 1 40.25 ? NBH Z85 361 A 1 
HETATM 35 C CBI Z85 . . . B 2 14.853 -8.403 -17.885 1 38.48 ? CBI Z85 361 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#