data_3LFE # _model_server_result.job_id NcaoECZxeGDPSqniWmDYIw _model_server_result.datetime_utc '2024-10-20 20:44:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":361}' # _entry.id 3LFE # _exptl.entry_id 3LFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.62 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-{4-[2-(pyridin-4-ylmethoxy)ethyl]-1,3-thiazol-2-yl}urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LFE _cell.length_a 68.63 _cell.length_b 70.16 _cell.length_c 74.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H30 N6 O2 S' _chem_comp.formula_weight 490.62 _chem_comp.id Z84 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-{4-[2-(pyridin-4-ylmethoxy)ethyl]-1,3-thiazol-2-yl}urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-(3-tert-butyl-1-p-tolyl-1H-pyrazol-5-yl)-3-(4-(2-(pyridin-4-ylmethoxy)ethyl)thiazol-2-yl)urea # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBA CAA Z84 sing 424 n n CAA HAA Z84 sing 425 n n CAA HAAA Z84 sing 426 n n CAA HAAB Z84 sing 427 n n CAB CBI Z84 sing 428 n n CAB HAB Z84 sing 429 n n CAB HABA Z84 sing 430 n n CAB HABB Z84 sing 431 n n CAC CBI Z84 sing 432 n n CAC HAC Z84 sing 433 n n CAC HACA Z84 sing 434 n n CAC HACB Z84 sing 435 n n CBI CAD Z84 sing 436 n n CAD HAD Z84 sing 437 n n CAD HADA Z84 sing 438 n n CAD HADB Z84 sing 439 n n OAE CAZ Z84 doub 440 n n NAS CAF Z84 doub 441 n y CAF CAH Z84 sing 442 n y CAF HAF Z84 sing 443 n n NAS CAG Z84 sing 444 n y CAG CAI Z84 doub 445 n y CAG HAG Z84 sing 446 n n CAH CBB Z84 doub 447 n y CAH HAH Z84 sing 448 n n CAI CBB Z84 sing 449 n y CAI HAI Z84 sing 450 n n CAL CAJ Z84 doub 451 n y CAJ CBA Z84 sing 452 n y CAJ HAJ Z84 sing 453 n n CAM CAK Z84 sing 454 n y CAK CBA Z84 doub 455 n y CAK HAK Z84 sing 456 n n CBD CAL Z84 sing 457 n y CAL HAL Z84 sing 458 n n CBD CAM Z84 doub 459 n y CAM HAM Z84 sing 460 n n CAN CBC Z84 doub 461 n y CAN SAY Z84 sing 462 n y CAN HAN Z84 sing 463 n n CAO CBF Z84 sing 464 n y CAO CBE Z84 doub 465 n y CAO HAO Z84 sing 466 n n CAP OAX Z84 sing 467 n n CAP CAQ Z84 sing 468 n n CAP HAP Z84 sing 469 n n CAP HAPA Z84 sing 470 n n CAQ CBC Z84 sing 471 n n CAQ HAQ Z84 sing 472 n n CAQ HAQA Z84 sing 473 n n CBB CAR Z84 sing 474 n n CAR OAX Z84 sing 475 n n CAR HAR Z84 sing 476 n n CAR HARA Z84 sing 477 n n CBC NAT Z84 sing 478 n y NAT CBG Z84 doub 479 n y CBF NAU Z84 doub 480 n y NAU NBH Z84 sing 481 n y CAZ NAV Z84 sing 482 n n NAV CBE Z84 sing 483 n n NAV HNAV Z84 sing 484 n n CBG NAW Z84 sing 485 n n CAZ NAW Z84 sing 486 n n NAW HNAW Z84 sing 487 n n SAY CBG Z84 sing 488 n y NBH CBD Z84 sing 489 n y CBE NBH Z84 sing 490 n y CBI CBF Z84 sing 491 n n # _atom_sites.entry_id 3LFE _atom_sites.fract_transf_matrix[1][1] 0.014571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 1000 1000 BOG BOG . C 3 Z84 A 1 361 1 Z84 Z84 . D 4 HOH A 1 362 1 HOH HOH . D 4 HOH A 2 363 3 HOH HOH . D 4 HOH A 3 364 4 HOH HOH . D 4 HOH A 4 365 5 HOH HOH . D 4 HOH A 5 366 6 HOH HOH . D 4 HOH A 6 367 7 HOH HOH . D 4 HOH A 7 368 9 HOH HOH . D 4 HOH A 8 369 10 HOH HOH . D 4 HOH A 9 370 11 HOH HOH . D 4 HOH A 10 371 12 HOH HOH . D 4 HOH A 11 372 13 HOH HOH . D 4 HOH A 12 373 14 HOH HOH . D 4 HOH A 13 374 15 HOH HOH . D 4 HOH A 14 375 16 HOH HOH . D 4 HOH A 15 376 17 HOH HOH . D 4 HOH A 16 377 18 HOH HOH . D 4 HOH A 17 378 19 HOH HOH . D 4 HOH A 18 379 20 HOH HOH . D 4 HOH A 19 380 21 HOH HOH . D 4 HOH A 20 381 22 HOH HOH . D 4 HOH A 21 382 23 HOH HOH . D 4 HOH A 22 383 24 HOH HOH . D 4 HOH A 23 384 25 HOH HOH . D 4 HOH A 24 385 26 HOH HOH . D 4 HOH A 25 386 27 HOH HOH . D 4 HOH A 26 387 28 HOH HOH . D 4 HOH A 27 388 30 HOH HOH . D 4 HOH A 28 389 31 HOH HOH . D 4 HOH A 29 390 32 HOH HOH . D 4 HOH A 30 391 35 HOH HOH . D 4 HOH A 31 392 37 HOH HOH . D 4 HOH A 32 393 40 HOH HOH . D 4 HOH A 33 394 41 HOH HOH . D 4 HOH A 34 395 42 HOH HOH . D 4 HOH A 35 396 43 HOH HOH . D 4 HOH A 36 397 44 HOH HOH . D 4 HOH A 37 398 45 HOH HOH . D 4 HOH A 38 399 46 HOH HOH . D 4 HOH A 39 400 48 HOH HOH . D 4 HOH A 40 401 49 HOH HOH . D 4 HOH A 41 402 50 HOH HOH . D 4 HOH A 42 403 53 HOH HOH . D 4 HOH A 43 404 55 HOH HOH . D 4 HOH A 44 405 57 HOH HOH . D 4 HOH A 45 406 58 HOH HOH . D 4 HOH A 46 407 59 HOH HOH . D 4 HOH A 47 408 60 HOH HOH . D 4 HOH A 48 409 61 HOH HOH . D 4 HOH A 49 410 62 HOH HOH . D 4 HOH A 50 411 63 HOH HOH . D 4 HOH A 51 412 64 HOH HOH . D 4 HOH A 52 413 65 HOH HOH . D 4 HOH A 53 414 66 HOH HOH . D 4 HOH A 54 415 67 HOH HOH . D 4 HOH A 55 416 68 HOH HOH . D 4 HOH A 56 417 69 HOH HOH . D 4 HOH A 57 418 70 HOH HOH . D 4 HOH A 58 419 71 HOH HOH . D 4 HOH A 59 420 72 HOH HOH . D 4 HOH A 60 421 73 HOH HOH . D 4 HOH A 61 422 74 HOH HOH . D 4 HOH A 62 423 75 HOH HOH . D 4 HOH A 63 424 76 HOH HOH . D 4 HOH A 64 425 77 HOH HOH . D 4 HOH A 65 426 78 HOH HOH . D 4 HOH A 66 427 79 HOH HOH . D 4 HOH A 67 428 80 HOH HOH . D 4 HOH A 68 429 81 HOH HOH . D 4 HOH A 69 430 82 HOH HOH . D 4 HOH A 70 431 83 HOH HOH . D 4 HOH A 71 432 84 HOH HOH . D 4 HOH A 72 433 85 HOH HOH . D 4 HOH A 73 434 86 HOH HOH . D 4 HOH A 74 435 87 HOH HOH . D 4 HOH A 75 436 88 HOH HOH . D 4 HOH A 76 437 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Z84 . . . C 3 20.101 -7.173 -10.718 1 17.85 ? CAA Z84 361 A 1 HETATM 2 C CAB Z84 . . . C 3 13.999 -7.706 -18.82 1 21.43 ? CAB Z84 361 A 1 HETATM 3 C CAC Z84 . . . C 3 15.236 -9.858 -18.467 1 21.03 ? CAC Z84 361 A 1 HETATM 4 C CAD Z84 . . . C 3 13.57 -9.146 -16.812 1 19.62 ? CAD Z84 361 A 1 HETATM 5 O OAE Z84 . . . C 3 18.105 -4.85 -18.609 1 26.29 ? OAE Z84 361 A 1 HETATM 6 C CAF Z84 . . . C 3 20.285 1.79 -25.46 1 66.72 ? CAF Z84 361 A 1 HETATM 7 C CAG Z84 . . . C 3 19.816 -0.366 -24.734 1 65.63 ? CAG Z84 361 A 1 HETATM 8 C CAH Z84 . . . C 3 21.058 2.04 -24.315 1 66.3 ? CAH Z84 361 A 1 HETATM 9 C CAI Z84 . . . C 3 20.572 -0.182 -23.567 1 64.84 ? CAI Z84 361 A 1 HETATM 10 C CAJ Z84 . . . C 3 19.054 -8.487 -12.644 1 20.02 ? CAJ Z84 361 A 1 HETATM 11 C CAK Z84 . . . C 3 18.851 -6.094 -12.664 1 22.1 ? CAK Z84 361 A 1 HETATM 12 C CAL Z84 . . . C 3 18.338 -8.539 -13.848 1 20.37 ? CAL Z84 361 A 1 HETATM 13 C CAM Z84 . . . C 3 18.145 -6.143 -13.875 1 19.85 ? CAM Z84 361 A 1 HETATM 14 C CAN Z84 . . . C 3 20.631 -1.711 -19.922 1 52.65 ? CAN Z84 361 A 1 HETATM 15 C CAO Z84 . . . C 3 16.734 -7.195 -17.716 1 22.4 ? CAO Z84 361 A 1 HETATM 16 C CAP Z84 . . . C 3 22.909 -0.907 -21.493 1 55.9 ? CAP Z84 361 A 1 HETATM 17 C CAQ Z84 . . . C 3 23.099 -1.99 -20.403 1 54.16 ? CAQ Z84 361 A 1 HETATM 18 C CAR Z84 . . . C 3 21.996 1.298 -22.184 1 61.92 ? CAR Z84 361 A 1 HETATM 19 N NAS Z84 . . . C 3 19.694 0.607 -25.633 1 66.37 ? NAS Z84 361 A 1 HETATM 20 N NAT Z84 . . . C 3 21.666 -3.416 -18.85 1 49.72 ? NAT Z84 361 A 1 HETATM 21 N NAU Z84 . . . C 3 16.179 -8.103 -15.825 1 19.48 ? NAU Z84 361 A 1 HETATM 22 N NAV Z84 . . . C 3 18.673 -6.111 -16.823 1 25.79 ? NAV Z84 361 A 1 HETATM 23 N NAW Z84 . . . C 3 20.057 -4.521 -17.511 1 36.04 ? NAW Z84 361 A 1 HETATM 24 O OAX Z84 . . . C 3 22.24 0.331 -21.095 1 58.85 ? OAX Z84 361 A 1 HETATM 25 S SAY Z84 . . . C 3 19.393 -2.41 -18.997 1 51.69 ? SAY Z84 361 A 1 HETATM 26 C CAZ Z84 . . . C 3 18.903 -5.153 -17.711 1 30.24 ? CAZ Z84 361 A 1 HETATM 27 C CBA Z84 . . . C 3 19.318 -7.258 -12.044 1 19.35 ? CBA Z84 361 A 1 HETATM 28 C CBB Z84 . . . C 3 21.213 1.043 -23.341 1 64.28 ? CBB Z84 361 A 1 HETATM 29 C CBC Z84 . . . C 3 21.784 -2.382 -19.718 1 52.38 ? CBC Z84 361 A 1 HETATM 30 C CBD Z84 . . . C 3 17.865 -7.367 -14.456 1 20.17 ? CBD Z84 361 A 1 HETATM 31 C CBE Z84 . . . C 3 17.589 -6.876 -16.751 1 23.15 ? CBE Z84 361 A 1 HETATM 32 C CBF Z84 . . . C 3 15.834 -7.956 -17.096 1 21.46 ? CBF Z84 361 A 1 HETATM 33 C CBG Z84 . . . C 3 20.429 -3.573 -18.348 1 46.25 ? CBG Z84 361 A 1 HETATM 34 N NBH Z84 . . . C 3 17.201 -7.456 -15.621 1 21.77 ? NBH Z84 361 A 1 HETATM 35 C CBI Z84 . . . C 3 14.625 -8.642 -17.777 1 22.69 ? CBI Z84 361 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #