data_3LFM # _model_server_result.job_id qR7DD1CnHEXtnIRLgZCPcA _model_server_result.datetime_utc '2024-11-23 19:23:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1550}' # _entry.id 3LFM # _exptl.entry_id 3LFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.086 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OXALYLGLYCINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LFM _cell.length_a 142.86 _cell.length_b 142.86 _cell.length_c 83.8 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 221 A HIS 231 1_555 D FE FE2 . A FE2 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc2 A OD1 ASP 223 A ASP 233 1_555 D FE FE2 . A FE2 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc3 A NE2 HIS 297 A HIS 307 1_555 D FE FE2 . A FE2 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc4 D FE FE2 . A FE2 507 1_555 C O2' OGA . A OGA 1550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc5 D FE FE2 . A FE2 507 1_555 C O2 OGA . A OGA 1550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? # _chem_comp.formula 'C4 H5 N O5' _chem_comp.formula_weight 147.086 _chem_comp.id OGA _chem_comp.mon_nstd_flag . _chem_comp.name N-OXALYLGLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OGA sing 270 n n C1 O1 OGA doub 271 n n C1 O2 OGA sing 272 n n C2 O2' OGA doub 273 n n C2 N1 OGA sing 274 n n C4 C5 OGA sing 275 n n C4 N1 OGA sing 276 n n C4 H4C1 OGA sing 277 n n C4 H4C2 OGA sing 278 n n C5 O3 OGA sing 279 n n C5 O4 OGA doub 280 n n O2 H2 OGA sing 281 n n O3 H3 OGA sing 282 n n N1 H1 OGA sing 283 n n # _atom_sites.entry_id 3LFM _atom_sites.fract_transf_matrix[1][1] 0.007 _atom_sites.fract_transf_matrix[1][2] 0.004041 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3DT A 1 506 503 3DT DT . C 3 OGA A 1 1550 1550 OGA OGA . D 4 FE2 A 1 507 300 FE2 FE2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OGA . . . C 3 30.315 -8.033 -23.604 1 91.06 ? C1 OGA 1550 A 1 HETATM 2 C C2 OGA . . . C 3 31.521 -7.147 -23.411 1 88.64 ? C2 OGA 1550 A 1 HETATM 3 C C4 OGA . . . C 3 32.897 -6.555 -21.493 1 80.9 ? C4 OGA 1550 A 1 HETATM 4 C C5 OGA . . . C 3 33.959 -7.198 -20.659 1 78.19 ? C5 OGA 1550 A 1 HETATM 5 O O1 OGA . . . C 3 30.203 -9.062 -22.966 1 91.23 ? O1 OGA 1550 A 1 HETATM 6 O O2 OGA . . . C 3 29.351 -7.693 -24.489 1 92.03 ? O2 OGA 1550 A 1 HETATM 7 O O2' OGA . . . C 3 31.64 -6.115 -24.05 1 89.03 ? O2' OGA 1550 A 1 HETATM 8 O O3 OGA . . . C 3 34.508 -6.532 -19.641 1 76.41 ? O3 OGA 1550 A 1 HETATM 9 N N1 OGA . . . C 3 32.471 -7.493 -22.531 1 84.62 ? N1 OGA 1550 A 1 HETATM 10 O O4 OGA . . . C 3 34.319 -8.318 -20.906 1 76.19 ? O4 OGA 1550 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #