data_3LFY
#
_model_server_result.job_id            bjmTlLvs7aM8a3kOSG5KJQ 
_model_server_result.datetime_utc      '2024-11-12 20:29:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lfy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":214}' 
#
_entry.id    3LFY 
#
_exptl.entry_id    3LFY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              132.118 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ASPARAGINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3LFY 
_cell.length_a            48.89 
_cell.length_b            48.89 
_cell.length_c            200.87 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LFY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf3 A SG CYS 153 A CYS 153 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf4 B SG CYS 22 C CYS 22 1_555 B SG CYS 63 C CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf5 B SG CYS 56 C CYS 56 1_555 B SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf6 B SG CYS 153 C CYS 153 1_555 B SG CYS 200 C CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
covale ? covale1 A C SER 24 A SER 24 1_555 A N OCS 25 A OCS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C OCS 25 A OCS 25 1_555 A N TRP 26 A TRP 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 C C SER . A SER 213 1_555 D N ASN . A ASN 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale4 B C SER 24 C SER 24 1_555 B N OCS 25 C OCS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale5 B C OCS 25 C OCS 25 1_555 B N TRP 26 C TRP 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 E C SER . C SER 213 1_555 F N GLY . C GLY 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 F C GLY . C GLY 214 1_555 G N ASN . C ASN 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C4 H8 N2 O3' 
_chem_comp.formula_weight    132.118 
_chem_comp.id                ASN 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              ASPARAGINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ASN sing 39 n n 
N H ASN sing 40 n n 
N H2 ASN sing 41 n n 
CA C ASN sing 42 n n 
CA CB ASN sing 43 n n 
CA HA ASN sing 44 n n 
C O ASN doub 45 n n 
C OXT ASN sing 46 n n 
CB CG ASN sing 47 n n 
CB HB2 ASN sing 48 n n 
CB HB3 ASN sing 49 n n 
CG OD1 ASN doub 50 n n 
CG ND2 ASN sing 51 n n 
ND2 HD21 ASN sing 52 n n 
ND2 HD22 ASN sing 53 n n 
OXT HXT ASN sing 54 n n 
#
_atom_sites.entry_id                     3LFY 
_atom_sites.fract_transf_matrix[1][1]    0.020454 
_atom_sites.fract_transf_matrix[1][2]    0.011809 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004978 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SER A 1 213 1 SER SER . 
D 3 ASN A 1 214 2 ASN ASN . 
E 2 SER C 1 213 1 SER SER . 
F 4 GLY C 1 214 2 GLY GLY . 
G 3 ASN C 1 215 3 ASN ASN . 
H 5 HOH A 1 215 2 HOH HOH . 
H 5 HOH A 2 216 6 HOH HOH . 
H 5 HOH A 3 217 13 HOH HOH . 
H 5 HOH A 4 218 15 HOH HOH . 
H 5 HOH A 5 219 16 HOH HOH . 
H 5 HOH A 6 220 18 HOH HOH . 
H 5 HOH A 7 221 19 HOH HOH . 
H 5 HOH A 8 222 20 HOH HOH . 
H 5 HOH A 9 223 21 HOH HOH . 
H 5 HOH A 10 224 22 HOH HOH . 
H 5 HOH A 11 225 23 HOH HOH . 
H 5 HOH A 12 226 24 HOH HOH . 
H 5 HOH A 13 227 25 HOH HOH . 
H 5 HOH A 14 228 26 HOH HOH . 
H 5 HOH A 15 229 27 HOH HOH . 
H 5 HOH A 16 230 28 HOH HOH . 
H 5 HOH A 17 231 29 HOH HOH . 
H 5 HOH A 18 232 30 HOH HOH . 
H 5 HOH A 19 233 31 HOH HOH . 
H 5 HOH A 20 234 32 HOH HOH . 
H 5 HOH A 21 235 33 HOH HOH . 
H 5 HOH A 22 236 35 HOH HOH . 
H 5 HOH A 23 237 36 HOH HOH . 
H 5 HOH A 24 238 37 HOH HOH . 
H 5 HOH A 25 239 38 HOH HOH . 
H 5 HOH A 26 240 39 HOH HOH . 
H 5 HOH A 27 241 40 HOH HOH . 
H 5 HOH A 28 242 41 HOH HOH . 
H 5 HOH A 29 243 42 HOH HOH . 
H 5 HOH A 30 244 43 HOH HOH . 
H 5 HOH A 31 245 44 HOH HOH . 
H 5 HOH A 32 246 45 HOH HOH . 
H 5 HOH A 33 247 46 HOH HOH . 
H 5 HOH A 34 248 47 HOH HOH . 
H 5 HOH A 35 249 48 HOH HOH . 
H 5 HOH A 36 250 49 HOH HOH . 
H 5 HOH A 37 251 50 HOH HOH . 
H 5 HOH A 38 252 51 HOH HOH . 
H 5 HOH A 39 253 52 HOH HOH . 
H 5 HOH A 40 254 53 HOH HOH . 
H 5 HOH A 41 255 59 HOH HOH . 
H 5 HOH A 42 256 68 HOH HOH . 
H 5 HOH A 43 257 69 HOH HOH . 
H 5 HOH A 44 258 70 HOH HOH . 
H 5 HOH A 45 259 71 HOH HOH . 
H 5 HOH A 46 260 83 HOH HOH . 
H 5 HOH A 47 261 84 HOH HOH . 
H 5 HOH A 48 262 85 HOH HOH . 
H 5 HOH A 49 263 90 HOH HOH . 
H 5 HOH A 50 264 91 HOH HOH . 
H 5 HOH A 51 265 92 HOH HOH . 
H 5 HOH A 52 266 93 HOH HOH . 
H 5 HOH A 53 267 94 HOH HOH . 
H 5 HOH A 54 268 95 HOH HOH . 
H 5 HOH A 55 269 96 HOH HOH . 
H 5 HOH A 56 270 97 HOH HOH . 
H 5 HOH A 57 271 98 HOH HOH . 
H 5 HOH A 58 272 99 HOH HOH . 
H 5 HOH A 59 273 100 HOH HOH . 
H 5 HOH A 60 274 102 HOH HOH . 
H 5 HOH A 61 275 104 HOH HOH . 
H 5 HOH A 62 276 105 HOH HOH . 
H 5 HOH A 63 277 106 HOH HOH . 
H 5 HOH A 64 278 107 HOH HOH . 
H 5 HOH A 65 279 108 HOH HOH . 
H 5 HOH A 66 280 109 HOH HOH . 
H 5 HOH A 67 281 110 HOH HOH . 
H 5 HOH A 68 282 111 HOH HOH . 
H 5 HOH A 69 283 112 HOH HOH . 
H 5 HOH A 70 284 113 HOH HOH . 
H 5 HOH A 71 285 122 HOH HOH . 
H 5 HOH A 72 286 116 HOH HOH . 
H 5 HOH A 73 287 117 HOH HOH . 
H 5 HOH A 74 288 118 HOH HOH . 
H 5 HOH A 75 289 121 HOH HOH . 
H 5 HOH A 76 290 128 HOH HOH . 
H 5 HOH A 77 291 129 HOH HOH . 
H 5 HOH A 78 292 130 HOH HOH . 
H 5 HOH A 79 293 131 HOH HOH . 
H 5 HOH A 80 294 133 HOH HOH . 
H 5 HOH A 81 295 134 HOH HOH . 
H 5 HOH A 82 296 136 HOH HOH . 
H 5 HOH A 83 297 137 HOH HOH . 
H 5 HOH A 84 298 140 HOH HOH . 
H 5 HOH A 85 299 141 HOH HOH . 
H 5 HOH A 86 300 142 HOH HOH . 
H 5 HOH A 87 301 143 HOH HOH . 
H 5 HOH A 88 302 144 HOH HOH . 
H 5 HOH A 89 303 155 HOH HOH . 
H 5 HOH A 90 304 158 HOH HOH . 
H 5 HOH A 91 305 159 HOH HOH . 
H 5 HOH A 92 306 160 HOH HOH . 
H 5 HOH A 93 307 161 HOH HOH . 
H 5 HOH A 94 308 162 HOH HOH . 
H 5 HOH A 95 309 163 HOH HOH . 
H 5 HOH A 96 310 170 HOH HOH . 
H 5 HOH A 97 311 171 HOH HOH . 
H 5 HOH A 98 312 153 HOH HOH . 
I 5 HOH C 1 216 1 HOH HOH . 
I 5 HOH C 2 217 3 HOH HOH . 
I 5 HOH C 3 218 4 HOH HOH . 
I 5 HOH C 4 219 5 HOH HOH . 
I 5 HOH C 5 220 7 HOH HOH . 
I 5 HOH C 6 221 8 HOH HOH . 
I 5 HOH C 7 222 9 HOH HOH . 
I 5 HOH C 8 223 10 HOH HOH . 
I 5 HOH C 9 224 11 HOH HOH . 
I 5 HOH C 10 225 12 HOH HOH . 
I 5 HOH C 11 226 14 HOH HOH . 
I 5 HOH C 12 227 17 HOH HOH . 
I 5 HOH C 13 228 34 HOH HOH . 
I 5 HOH C 14 229 54 HOH HOH . 
I 5 HOH C 15 230 55 HOH HOH . 
I 5 HOH C 16 231 56 HOH HOH . 
I 5 HOH C 17 232 57 HOH HOH . 
I 5 HOH C 18 233 58 HOH HOH . 
I 5 HOH C 19 234 60 HOH HOH . 
I 5 HOH C 20 235 61 HOH HOH . 
I 5 HOH C 21 236 62 HOH HOH . 
I 5 HOH C 22 237 63 HOH HOH . 
I 5 HOH C 23 238 64 HOH HOH . 
I 5 HOH C 24 239 65 HOH HOH . 
I 5 HOH C 25 240 66 HOH HOH . 
I 5 HOH C 26 241 67 HOH HOH . 
I 5 HOH C 27 242 72 HOH HOH . 
I 5 HOH C 28 243 73 HOH HOH . 
I 5 HOH C 29 244 74 HOH HOH . 
I 5 HOH C 30 245 75 HOH HOH . 
I 5 HOH C 31 246 76 HOH HOH . 
I 5 HOH C 32 247 77 HOH HOH . 
I 5 HOH C 33 248 78 HOH HOH . 
I 5 HOH C 34 249 79 HOH HOH . 
I 5 HOH C 35 250 80 HOH HOH . 
I 5 HOH C 36 251 81 HOH HOH . 
I 5 HOH C 37 252 82 HOH HOH . 
I 5 HOH C 38 253 86 HOH HOH . 
I 5 HOH C 39 254 87 HOH HOH . 
I 5 HOH C 40 255 88 HOH HOH . 
I 5 HOH C 41 256 89 HOH HOH . 
I 5 HOH C 42 257 101 HOH HOH . 
I 5 HOH C 43 258 103 HOH HOH . 
I 5 HOH C 44 259 114 HOH HOH . 
I 5 HOH C 45 260 119 HOH HOH . 
I 5 HOH C 46 261 120 HOH HOH . 
I 5 HOH C 47 263 123 HOH HOH . 
I 5 HOH C 48 264 124 HOH HOH . 
I 5 HOH C 49 265 125 HOH HOH . 
I 5 HOH C 50 266 126 HOH HOH . 
I 5 HOH C 51 267 127 HOH HOH . 
I 5 HOH C 52 268 132 HOH HOH . 
I 5 HOH C 53 269 135 HOH HOH . 
I 5 HOH C 54 270 138 HOH HOH . 
I 5 HOH C 55 271 139 HOH HOH . 
I 5 HOH C 56 272 145 HOH HOH . 
I 5 HOH C 57 273 146 HOH HOH . 
I 5 HOH C 58 274 147 HOH HOH . 
I 5 HOH C 59 275 148 HOH HOH . 
I 5 HOH C 60 276 149 HOH HOH . 
I 5 HOH C 61 277 150 HOH HOH . 
I 5 HOH C 62 278 151 HOH HOH . 
I 5 HOH C 63 279 152 HOH HOH . 
I 5 HOH C 64 281 154 HOH HOH . 
I 5 HOH C 65 282 156 HOH HOH . 
I 5 HOH C 66 283 157 HOH HOH . 
I 5 HOH C 67 284 164 HOH HOH . 
I 5 HOH C 68 285 115 HOH HOH . 
I 5 HOH C 69 286 166 HOH HOH . 
I 5 HOH C 70 287 167 HOH HOH . 
I 5 HOH C 71 288 168 HOH HOH . 
I 5 HOH C 72 289 169 HOH HOH . 
I 5 HOH C 73 290 165 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ASN . . . D 3 84.378 23.524 44.879 1 85.82 ? N ASN 214 A 1 
HETATM 2 C CA ASN . . . D 3 85.239 23.041 43.789 1 85.35 ? CA ASN 214 A 1 
HETATM 3 C C ASN . . . D 3 85.616 24.181 42.85 1 84.76 ? C ASN 214 A 1 
HETATM 4 O O ASN . . . D 3 85.291 25.332 43.195 1 83.96 ? O ASN 214 A 1 
HETATM 5 C CB ASN . . . D 3 84.565 21.914 42.989 1 86.11 ? CB ASN 214 A 1 
HETATM 6 C CG ASN . . . D 3 84.622 20.57 43.705 1 86.12 ? CG ASN 214 A 1 
HETATM 7 O OD1 ASN . . . D 3 85.69 20.129 44.137 1 85.97 ? OD1 ASN 214 A 1 
HETATM 8 N ND2 ASN . . . D 3 83.472 19.912 43.828 1 85.87 ? ND2 ASN 214 A 1 
HETATM 9 O OXT ASN . . . D 3 86.243 23.925 41.799 1 84.45 ? OXT ASN 214 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           206 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#