data_3LFZ # _model_server_result.job_id ZITXXZXpgc4cPMfZeE2aMg _model_server_result.datetime_utc '2024-11-27 15:55:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":282}' # _entry.id 3LFZ # _exptl.entry_id 3LFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LFZ _cell.length_a 109.144 _cell.length_b 109.144 _cell.length_c 142.414 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3LFZ _atom_sites.fract_transf_matrix[1][1] 0.009162 _atom_sites.fract_transf_matrix[1][2] 0.00529 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 281 1 ATP ATP . C 3 ADP A 1 282 1 ADP ADP . D 2 ATP A 1 283 1 ATP ATP . E 4 AMP A 1 284 1 AMP AMP . F 5 HOH A 1 285 1 HOH HOH . F 5 HOH A 2 286 2 HOH HOH . F 5 HOH A 3 287 3 HOH HOH . F 5 HOH A 4 288 4 HOH HOH . F 5 HOH A 5 289 5 HOH HOH . F 5 HOH A 6 290 6 HOH HOH . F 5 HOH A 7 291 7 HOH HOH . F 5 HOH A 8 292 8 HOH HOH . F 5 HOH A 9 293 9 HOH HOH . F 5 HOH A 10 294 10 HOH HOH . F 5 HOH A 11 295 11 HOH HOH . F 5 HOH A 12 296 12 HOH HOH . F 5 HOH A 13 297 13 HOH HOH . F 5 HOH A 14 298 14 HOH HOH . F 5 HOH A 15 299 15 HOH HOH . F 5 HOH A 16 300 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 12.59 22.542 24.312 1 57.62 ? PB ADP 282 A 1 HETATM 2 O O1B ADP . . . C 3 11.335 22.155 25 1 57.37 ? O1B ADP 282 A 1 HETATM 3 O O2B ADP . . . C 3 12.365 22.78 22.716 1 56.88 ? O2B ADP 282 A 1 HETATM 4 O O3B ADP . . . C 3 13.807 21.466 24.425 1 57.06 ? O3B ADP 282 A 1 HETATM 5 P PA ADP . . . C 3 13.258 24.119 26.495 1 54.13 ? PA ADP 282 A 1 HETATM 6 O O1A ADP . . . C 3 11.956 23.923 27.186 1 54.68 ? O1A ADP 282 A 1 HETATM 7 O O2A ADP . . . C 3 14.458 23.149 27.019 1 54.88 ? O2A ADP 282 A 1 HETATM 8 O O3A ADP . . . C 3 13.167 23.894 24.901 1 55.76 ? O3A ADP 282 A 1 HETATM 9 O O5' ADP . . . C 3 13.619 25.666 26.587 1 52.83 ? O5' ADP 282 A 1 HETATM 10 C C5' ADP . . . C 3 14.878 26.271 26.85 1 49.76 ? C5' ADP 282 A 1 HETATM 11 C C4' ADP . . . C 3 14.813 27.712 26.297 1 47.86 ? C4' ADP 282 A 1 HETATM 12 O O4' ADP . . . C 3 14.964 27.614 24.849 1 46.59 ? O4' ADP 282 A 1 HETATM 13 C C3' ADP . . . C 3 13.452 28.385 26.559 1 47 ? C3' ADP 282 A 1 HETATM 14 O O3' ADP . . . C 3 13.642 29.78 26.817 1 47.22 ? O3' ADP 282 A 1 HETATM 15 C C2' ADP . . . C 3 12.697 28.18 25.247 1 46.32 ? C2' ADP 282 A 1 HETATM 16 O O2' ADP . . . C 3 11.729 29.207 25.031 1 45.74 ? O2' ADP 282 A 1 HETATM 17 C C1' ADP . . . C 3 13.818 28.248 24.21 1 45.69 ? C1' ADP 282 A 1 HETATM 18 N N9 ADP . . . C 3 13.419 27.498 22.984 1 44.52 ? N9 ADP 282 A 1 HETATM 19 C C8 ADP . . . C 3 12.79 26.319 22.934 1 44.3 ? C8 ADP 282 A 1 HETATM 20 N N7 ADP . . . C 3 12.595 25.965 21.663 1 43.91 ? N7 ADP 282 A 1 HETATM 21 C C5 ADP . . . C 3 13.101 26.92 20.894 1 43.77 ? C5 ADP 282 A 1 HETATM 22 C C6 ADP . . . C 3 13.194 27.105 19.519 1 43.59 ? C6 ADP 282 A 1 HETATM 23 N N6 ADP . . . C 3 12.709 26.201 18.671 1 43.01 ? N6 ADP 282 A 1 HETATM 24 N N1 ADP . . . C 3 13.79 28.218 19.058 1 43.46 ? N1 ADP 282 A 1 HETATM 25 C C2 ADP . . . C 3 14.279 29.128 19.892 1 43.57 ? C2 ADP 282 A 1 HETATM 26 N N3 ADP . . . C 3 14.205 28.981 21.206 1 43.44 ? N3 ADP 282 A 1 HETATM 27 C C4 ADP . . . C 3 13.623 27.894 21.734 1 43.98 ? C4 ADP 282 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #