data_3LFZ
#
_model_server_result.job_id            qMiEAGJQ7GtlybI8XRp-wA 
_model_server_result.datetime_utc      '2024-11-27 15:32:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lfz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":283}' 
#
_entry.id    3LFZ 
#
_exptl.entry_id    3LFZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3LFZ 
_cell.length_a            109.144 
_cell.length_b            109.144 
_cell.length_c            142.414 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LFZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 153 n n 
PG O2G ATP sing 154 n n 
PG O3G ATP sing 155 n n 
PG O3B ATP sing 156 n n 
O2G HOG2 ATP sing 157 n n 
O3G HOG3 ATP sing 158 n n 
PB O1B ATP doub 159 n n 
PB O2B ATP sing 160 n n 
PB O3B ATP sing 161 n n 
PB O3A ATP sing 162 n n 
O2B HOB2 ATP sing 163 n n 
PA O1A ATP doub 164 n n 
PA O2A ATP sing 165 n n 
PA O3A ATP sing 166 n n 
PA O5' ATP sing 167 n n 
O2A HOA2 ATP sing 168 n n 
O5' C5' ATP sing 169 n n 
C5' C4' ATP sing 170 n n 
C5' "H5'1" ATP sing 171 n n 
C5' "H5'2" ATP sing 172 n n 
C4' O4' ATP sing 173 n n 
C4' C3' ATP sing 174 n n 
C4' H4' ATP sing 175 n n 
O4' C1' ATP sing 176 n n 
C3' O3' ATP sing 177 n n 
C3' C2' ATP sing 178 n n 
C3' H3' ATP sing 179 n n 
O3' HO3' ATP sing 180 n n 
C2' O2' ATP sing 181 n n 
C2' C1' ATP sing 182 n n 
C2' H2' ATP sing 183 n n 
O2' HO2' ATP sing 184 n n 
C1' N9 ATP sing 185 n n 
C1' H1' ATP sing 186 n n 
N9 C8 ATP sing 187 n y 
N9 C4 ATP sing 188 n y 
C8 N7 ATP doub 189 n y 
C8 H8 ATP sing 190 n n 
N7 C5 ATP sing 191 n y 
C5 C6 ATP sing 192 n y 
C5 C4 ATP doub 193 n y 
C6 N6 ATP sing 194 n n 
C6 N1 ATP doub 195 n y 
N6 HN61 ATP sing 196 n n 
N6 HN62 ATP sing 197 n n 
N1 C2 ATP sing 198 n y 
C2 N3 ATP doub 199 n y 
C2 H2 ATP sing 200 n n 
N3 C4 ATP sing 201 n y 
#
_atom_sites.entry_id                     3LFZ 
_atom_sites.fract_transf_matrix[1][1]    0.009162 
_atom_sites.fract_transf_matrix[1][2]    0.00529 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01058 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 281 1 ATP ATP . 
C 3 ADP A 1 282 1 ADP ADP . 
D 2 ATP A 1 283 1 ATP ATP . 
E 4 AMP A 1 284 1 AMP AMP . 
F 5 HOH A 1 285 1 HOH HOH . 
F 5 HOH A 2 286 2 HOH HOH . 
F 5 HOH A 3 287 3 HOH HOH . 
F 5 HOH A 4 288 4 HOH HOH . 
F 5 HOH A 5 289 5 HOH HOH . 
F 5 HOH A 6 290 6 HOH HOH . 
F 5 HOH A 7 291 7 HOH HOH . 
F 5 HOH A 8 292 8 HOH HOH . 
F 5 HOH A 9 293 9 HOH HOH . 
F 5 HOH A 10 294 10 HOH HOH . 
F 5 HOH A 11 295 11 HOH HOH . 
F 5 HOH A 12 296 12 HOH HOH . 
F 5 HOH A 13 297 13 HOH HOH . 
F 5 HOH A 14 298 14 HOH HOH . 
F 5 HOH A 15 299 15 HOH HOH . 
F 5 HOH A 16 300 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . D 2 6.525 15.134 27.156 1 61.33 ? PG ATP 283 A 1 
HETATM 2 O O1G ATP . . . D 2 8.072 15.486 27.487 1 61.28 ? O1G ATP 283 A 1 
HETATM 3 O O2G ATP . . . D 2 6.405 13.943 26.281 1 61.47 ? O2G ATP 283 A 1 
HETATM 4 O O3G ATP . . . D 2 5.888 14.851 28.606 1 61.08 ? O3G ATP 283 A 1 
HETATM 5 P PB ATP . . . D 2 6.603 17.359 25.496 1 58 ? PB ATP 283 A 1 
HETATM 6 O O1B ATP . . . D 2 6.389 18.776 25.839 1 58.23 ? O1B ATP 283 A 1 
HETATM 7 O O2B ATP . . . D 2 7.981 16.836 25.413 1 58.08 ? O2B ATP 283 A 1 
HETATM 8 O O3B ATP . . . D 2 5.799 16.444 26.533 1 59.57 ? O3B ATP 283 A 1 
HETATM 9 P PA ATP . . . D 2 6.605 16.051 23.036 1 53.08 ? PA ATP 283 A 1 
HETATM 10 O O1A ATP . . . D 2 7.803 16.69 22.447 1 53.47 ? O1A ATP 283 A 1 
HETATM 11 O O2A ATP . . . D 2 6.75 14.739 23.703 1 53.31 ? O2A ATP 283 A 1 
HETATM 12 O O3A ATP . . . D 2 5.905 17.079 24.067 1 55.41 ? O3A ATP 283 A 1 
HETATM 13 O O5' ATP . . . D 2 5.489 15.925 21.901 1 50.68 ? O5' ATP 283 A 1 
HETATM 14 C C5' ATP . . . D 2 4.53 14.852 21.902 1 47.23 ? C5' ATP 283 A 1 
HETATM 15 C C4' ATP . . . D 2 3.561 15.012 20.723 1 44.58 ? C4' ATP 283 A 1 
HETATM 16 O O4' ATP . . . D 2 2.821 16.254 20.896 1 43.27 ? O4' ATP 283 A 1 
HETATM 17 C C3' ATP . . . D 2 4.374 15.144 19.429 1 43.56 ? C3' ATP 283 A 1 
HETATM 18 O O3' ATP . . . D 2 3.753 14.38 18.393 1 43.55 ? O3' ATP 283 A 1 
HETATM 19 C C2' ATP . . . D 2 4.31 16.635 19.106 1 42.75 ? C2' ATP 283 A 1 
HETATM 20 O O2' ATP . . . D 2 4.344 16.853 17.69 1 41.65 ? O2' ATP 283 A 1 
HETATM 21 C C1' ATP . . . D 2 2.963 17.048 19.698 1 41.99 ? C1' ATP 283 A 1 
HETATM 22 N N9 ATP . . . D 2 2.999 18.475 20.119 1 40.83 ? N9 ATP 283 A 1 
HETATM 23 C C8 ATP . . . D 2 3.954 19.06 20.849 1 40.04 ? C8 ATP 283 A 1 
HETATM 24 N N7 ATP . . . D 2 3.651 20.346 21.034 1 39.66 ? N7 ATP 283 A 1 
HETATM 25 C C5 ATP . . . D 2 2.495 20.58 20.421 1 39.21 ? C5 ATP 283 A 1 
HETATM 26 C C6 ATP . . . D 2 1.698 21.707 20.27 1 39.06 ? C6 ATP 283 A 1 
HETATM 27 N N6 ATP . . . D 2 2.062 22.87 20.809 1 38.39 ? N6 ATP 283 A 1 
HETATM 28 N N1 ATP . . . D 2 0.552 21.604 19.569 1 38.78 ? N1 ATP 283 A 1 
HETATM 29 C C2 ATP . . . D 2 0.179 20.453 19.026 1 38.86 ? C2 ATP 283 A 1 
HETATM 30 N N3 ATP . . . D 2 0.92 19.362 19.152 1 39.59 ? N3 ATP 283 A 1 
HETATM 31 C C4 ATP . . . D 2 2.076 19.393 19.842 1 39.87 ? C4 ATP 283 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#