data_3LFZ # _model_server_result.job_id qSdXg9jH6ko6JzPXai28zg _model_server_result.datetime_utc '2024-11-27 15:41:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":284}' # _entry.id 3LFZ # _exptl.entry_id 3LFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LFZ _cell.length_a 109.144 _cell.length_b 109.144 _cell.length_c 142.414 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 57 n n P O2P AMP sing 58 n n P O3P AMP sing 59 n n P O5' AMP sing 60 n n O2P HOP2 AMP sing 61 n n O3P HOP3 AMP sing 62 n n O5' C5' AMP sing 63 n n C5' C4' AMP sing 64 n n C5' "H5'1" AMP sing 65 n n C5' "H5'2" AMP sing 66 n n C4' O4' AMP sing 67 n n C4' C3' AMP sing 68 n n C4' H4' AMP sing 69 n n O4' C1' AMP sing 70 n n C3' O3' AMP sing 71 n n C3' C2' AMP sing 72 n n C3' H3' AMP sing 73 n n O3' HO3' AMP sing 74 n n C2' O2' AMP sing 75 n n C2' C1' AMP sing 76 n n C2' H2' AMP sing 77 n n O2' HO2' AMP sing 78 n n C1' N9 AMP sing 79 n n C1' H1' AMP sing 80 n n N9 C8 AMP sing 81 n y N9 C4 AMP sing 82 n y C8 N7 AMP doub 83 n y C8 H8 AMP sing 84 n n N7 C5 AMP sing 85 n y C5 C6 AMP sing 86 n y C5 C4 AMP doub 87 n y C6 N6 AMP sing 88 n n C6 N1 AMP doub 89 n y N6 HN61 AMP sing 90 n n N6 HN62 AMP sing 91 n n N1 C2 AMP sing 92 n y C2 N3 AMP doub 93 n y C2 H2 AMP sing 94 n n N3 C4 AMP sing 95 n y # _atom_sites.entry_id 3LFZ _atom_sites.fract_transf_matrix[1][1] 0.009162 _atom_sites.fract_transf_matrix[1][2] 0.00529 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 281 1 ATP ATP . C 3 ADP A 1 282 1 ADP ADP . D 2 ATP A 1 283 1 ATP ATP . E 4 AMP A 1 284 1 AMP AMP . F 5 HOH A 1 285 1 HOH HOH . F 5 HOH A 2 286 2 HOH HOH . F 5 HOH A 3 287 3 HOH HOH . F 5 HOH A 4 288 4 HOH HOH . F 5 HOH A 5 289 5 HOH HOH . F 5 HOH A 6 290 6 HOH HOH . F 5 HOH A 7 291 7 HOH HOH . F 5 HOH A 8 292 8 HOH HOH . F 5 HOH A 9 293 9 HOH HOH . F 5 HOH A 10 294 10 HOH HOH . F 5 HOH A 11 295 11 HOH HOH . F 5 HOH A 12 296 12 HOH HOH . F 5 HOH A 13 297 13 HOH HOH . F 5 HOH A 14 298 14 HOH HOH . F 5 HOH A 15 299 15 HOH HOH . F 5 HOH A 16 300 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 4 35.509 0.902 17.42 1 62.38 ? P AMP 284 A 1 HETATM 2 O O1P AMP . . . E 4 36.838 1.294 17.959 1 62.31 ? O1P AMP 284 A 1 HETATM 3 O O2P AMP . . . E 4 34.522 0.353 18.579 1 62.1 ? O2P AMP 284 A 1 HETATM 4 O O3P AMP . . . E 4 35.628 -0.321 16.362 1 62.37 ? O3P AMP 284 A 1 HETATM 5 O O5' AMP . . . E 4 34.706 2.076 16.685 1 61.12 ? O5' AMP 284 A 1 HETATM 6 C C5' AMP . . . E 4 35.016 2.446 15.337 1 59.19 ? C5' AMP 284 A 1 HETATM 7 C C4' AMP . . . E 4 34.447 3.824 15.036 1 57.82 ? C4' AMP 284 A 1 HETATM 8 O O4' AMP . . . E 4 33.027 3.779 15.302 1 56.88 ? O4' AMP 284 A 1 HETATM 9 C C3' AMP . . . E 4 35.013 4.819 16.045 1 57.13 ? C3' AMP 284 A 1 HETATM 10 O O3' AMP . . . E 4 36.214 5.396 15.527 1 57.38 ? O3' AMP 284 A 1 HETATM 11 C C2' AMP . . . E 4 33.914 5.865 16.127 1 56.38 ? C2' AMP 284 A 1 HETATM 12 O O2' AMP . . . E 4 34.03 6.799 15.049 1 56.25 ? O2' AMP 284 A 1 HETATM 13 C C1' AMP . . . E 4 32.64 5.037 15.932 1 55.67 ? C1' AMP 284 A 1 HETATM 14 N N9 AMP . . . E 4 31.977 4.79 17.239 1 53.85 ? N9 AMP 284 A 1 HETATM 15 C C8 AMP . . . E 4 32.078 3.694 17.994 1 53.22 ? C8 AMP 284 A 1 HETATM 16 N N7 AMP . . . E 4 31.334 3.846 19.092 1 52.56 ? N7 AMP 284 A 1 HETATM 17 C C5 AMP . . . E 4 30.758 5.042 19.033 1 52.11 ? C5 AMP 284 A 1 HETATM 18 C C6 AMP . . . E 4 29.894 5.747 19.865 1 51.59 ? C6 AMP 284 A 1 HETATM 19 N N6 AMP . . . E 4 29.47 5.22 21.011 1 50.92 ? N6 AMP 284 A 1 HETATM 20 N N1 AMP . . . E 4 29.491 6.976 19.494 1 51.42 ? N1 AMP 284 A 1 HETATM 21 C C2 AMP . . . E 4 29.905 7.518 18.355 1 51.78 ? C2 AMP 284 A 1 HETATM 22 N N3 AMP . . . E 4 30.729 6.871 17.543 1 52.2 ? N3 AMP 284 A 1 HETATM 23 C C4 AMP . . . E 4 31.168 5.641 17.855 1 52.66 ? C4 AMP 284 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 480 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #