data_3LG4
#
_model_server_result.job_id            i0Hu5lVg_PGYtJW86RVn4w 
_model_server_result.datetime_utc      '2024-11-27 18:30:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lg4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    3LG4 
#
_exptl.entry_id    3LG4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3LG4 
_cell.length_a            88.752 
_cell.length_b            88.752 
_cell.length_c            103.167 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LG4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 279 n n 
PA O2A NDP sing 280 n n 
PA O5B NDP sing 281 n n 
PA O3 NDP sing 282 n n 
O2A HOA2 NDP sing 283 n n 
O5B C5B NDP sing 284 n n 
C5B C4B NDP sing 285 n n 
C5B H51A NDP sing 286 n n 
C5B H52A NDP sing 287 n n 
C4B O4B NDP sing 288 n n 
C4B C3B NDP sing 289 n n 
C4B H4B NDP sing 290 n n 
O4B C1B NDP sing 291 n n 
C3B O3B NDP sing 292 n n 
C3B C2B NDP sing 293 n n 
C3B H3B NDP sing 294 n n 
O3B HO3A NDP sing 295 n n 
C2B O2B NDP sing 296 n n 
C2B C1B NDP sing 297 n n 
C2B H2B NDP sing 298 n n 
O2B P2B NDP sing 299 n n 
C1B N9A NDP sing 300 n n 
C1B H1B NDP sing 301 n n 
N9A C8A NDP sing 302 n y 
N9A C4A NDP sing 303 n y 
C8A N7A NDP doub 304 n y 
C8A H8A NDP sing 305 n n 
N7A C5A NDP sing 306 n y 
C5A C6A NDP sing 307 n y 
C5A C4A NDP doub 308 n y 
C6A N6A NDP sing 309 n n 
C6A N1A NDP doub 310 n y 
N6A H61A NDP sing 311 n n 
N6A H62A NDP sing 312 n n 
N1A C2A NDP sing 313 n y 
C2A N3A NDP doub 314 n y 
C2A H2A NDP sing 315 n n 
N3A C4A NDP sing 316 n y 
O3 PN NDP sing 317 n n 
PN O1N NDP doub 318 n n 
PN O2N NDP sing 319 n n 
PN O5D NDP sing 320 n n 
O2N H21N NDP sing 321 n n 
O5D C5D NDP sing 322 n n 
C5D C4D NDP sing 323 n n 
C5D H51N NDP sing 324 n n 
C5D H52N NDP sing 325 n n 
C4D O4D NDP sing 326 n n 
C4D C3D NDP sing 327 n n 
C4D H4D NDP sing 328 n n 
O4D C1D NDP sing 329 n n 
C3D O3D NDP sing 330 n n 
C3D C2D NDP sing 331 n n 
C3D H3D NDP sing 332 n n 
O3D HO3N NDP sing 333 n n 
C2D O2D NDP sing 334 n n 
C2D C1D NDP sing 335 n n 
C2D H2D NDP sing 336 n n 
O2D HO2N NDP sing 337 n n 
C1D N1N NDP sing 338 n n 
C1D H1D NDP sing 339 n n 
N1N C2N NDP sing 340 n n 
N1N C6N NDP sing 341 n n 
C2N C3N NDP doub 342 n n 
C2N H2N NDP sing 343 n n 
C3N C7N NDP sing 344 n n 
C3N C4N NDP sing 345 n n 
C7N O7N NDP doub 346 n n 
C7N N7N NDP sing 347 n n 
N7N H71N NDP sing 348 n n 
N7N H72N NDP sing 349 n n 
C4N C5N NDP sing 350 n n 
C4N H41N NDP sing 351 n n 
C4N H42N NDP sing 352 n n 
C5N C6N NDP doub 353 n n 
C5N H5N NDP sing 354 n n 
C6N H6N NDP sing 355 n n 
P2B O1X NDP doub 356 n n 
P2B O2X NDP sing 357 n n 
P2B O3X NDP sing 358 n n 
O2X HOP2 NDP sing 359 n n 
O3X HOP3 NDP sing 360 n n 
#
_atom_sites.entry_id                     3LG4 
_atom_sites.fract_transf_matrix[1][1]    0.011267 
_atom_sites.fract_transf_matrix[1][2]    0.006505 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01301 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 201 207 NDP NAP . 
D 3 52V A 1 202 1 52V 52V . 
E 2 NDP B 1 201 207 NDP NAP . 
F 3 52V B 1 202 1 52V 52V . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 2 -27.627 -17.228 11.438 1 98.57 ? PA NDP 201 A 1 
HETATM 2 O O1A NDP . . . C 2 -26.697 -16.334 12.169 1 98.64 ? O1A NDP 201 A 1 
HETATM 3 O O2A NDP . . . C 2 -27.664 -18.57 12.048 1 98.42 ? O2A NDP 201 A 1 
HETATM 4 O O5B NDP . . . C 2 -29.106 -16.607 11.381 1 101.06 ? O5B NDP 201 A 1 
HETATM 5 C C5B NDP . . . C 2 -29.407 -15.376 11.995 1 105.01 ? C5B NDP 201 A 1 
HETATM 6 C C4B NDP . . . C 2 -30.679 -15.536 12.804 1 107.71 ? C4B NDP 201 A 1 
HETATM 7 O O4B NDP . . . C 2 -30.4 -15.559 14.189 1 108.95 ? O4B NDP 201 A 1 
HETATM 8 C C3B NDP . . . C 2 -31.65 -14.389 12.597 1 109.18 ? C3B NDP 201 A 1 
HETATM 9 O O3B NDP . . . C 2 -32.475 -14.606 11.477 1 109.53 ? O3B NDP 201 A 1 
HETATM 10 C C2B NDP . . . C 2 -32.445 -14.438 13.877 1 110.48 ? C2B NDP 201 A 1 
HETATM 11 O O2B NDP . . . C 2 -33.406 -15.465 13.789 1 111.78 ? O2B NDP 201 A 1 
HETATM 12 C C1B NDP . . . C 2 -31.417 -14.88 14.9 1 110.91 ? C1B NDP 201 A 1 
HETATM 13 N N9A NDP . . . C 2 -30.88 -13.709 15.621 1 111.36 ? N9A NDP 201 A 1 
HETATM 14 C C8A NDP . . . C 2 -29.678 -13.086 15.402 1 111.62 ? C8A NDP 201 A 1 
HETATM 15 N N7A NDP . . . C 2 -29.564 -12.059 16.277 1 111.85 ? N7A NDP 201 A 1 
HETATM 16 C C5A NDP . . . C 2 -30.674 -12.011 17.051 1 111.83 ? C5A NDP 201 A 1 
HETATM 17 C C6A NDP . . . C 2 -31.077 -11.172 18.097 1 111.75 ? C6A NDP 201 A 1 
HETATM 18 N N6A NDP . . . C 2 -30.299 -10.174 18.506 1 111.73 ? N6A NDP 201 A 1 
HETATM 19 N N1A NDP . . . C 2 -32.299 -11.374 18.717 1 111.67 ? N1A NDP 201 A 1 
HETATM 20 C C2A NDP . . . C 2 -33.117 -12.409 18.3 1 111.69 ? C2A NDP 201 A 1 
HETATM 21 N N3A NDP . . . C 2 -32.71 -13.238 17.266 1 111.77 ? N3A NDP 201 A 1 
HETATM 22 C C4A NDP . . . C 2 -31.511 -13.046 16.649 1 111.69 ? C4A NDP 201 A 1 
HETATM 23 O O3 NDP . . . C 2 -27.231 -17.341 9.885 1 96.28 ? O3 NDP 201 A 1 
HETATM 24 P PN NDP . . . C 2 -26.594 -16.305 8.835 1 94.02 ? PN NDP 201 A 1 
HETATM 25 O O1N NDP . . . C 2 -27.605 -16.045 7.787 1 94.02 ? O1N NDP 201 A 1 
HETATM 26 O O2N NDP . . . C 2 -25.988 -15.174 9.572 1 93.88 ? O2N NDP 201 A 1 
HETATM 27 O O5D NDP . . . C 2 -25.423 -17.195 8.181 1 92.08 ? O5D NDP 201 A 1 
HETATM 28 C C5D NDP . . . C 2 -25.674 -18.522 7.772 1 89.65 ? C5D NDP 201 A 1 
HETATM 29 C C4D NDP . . . C 2 -24.447 -19.016 7.022 1 88.21 ? C4D NDP 201 A 1 
HETATM 30 O O4D NDP . . . C 2 -23.381 -19.197 7.925 1 87.06 ? O4D NDP 201 A 1 
HETATM 31 C C3D NDP . . . C 2 -24.664 -20.343 6.314 1 87.55 ? C3D NDP 201 A 1 
HETATM 32 O O3D NDP . . . C 2 -24.358 -20.166 4.945 1 87.26 ? O3D NDP 201 A 1 
HETATM 33 C C2D NDP . . . C 2 -23.693 -21.307 6.968 1 86.82 ? C2D NDP 201 A 1 
HETATM 34 O O2D NDP . . . C 2 -23.112 -22.142 5.996 1 86.71 ? O2D NDP 201 A 1 
HETATM 35 C C1D NDP . . . C 2 -22.667 -20.367 7.589 1 86.36 ? C1D NDP 201 A 1 
HETATM 36 N N1N NDP . . . C 2 -21.95 -20.871 8.781 1 85.99 ? N1N NDP 201 A 1 
HETATM 37 C C2N NDP . . . C 2 -20.591 -21.068 8.691 1 85.47 ? C2N NDP 201 A 1 
HETATM 38 C C3N NDP . . . C 2 -19.848 -21.527 9.784 1 85.06 ? C3N NDP 201 A 1 
HETATM 39 C C7N NDP . . . C 2 -18.343 -21.595 9.713 1 84.41 ? C7N NDP 201 A 1 
HETATM 40 O O7N NDP . . . C 2 -17.584 -21.672 10.899 1 84.01 ? O7N NDP 201 A 1 
HETATM 41 N N7N NDP . . . C 2 -17.747 -21.582 8.522 1 83.87 ? N7N NDP 201 A 1 
HETATM 42 C C4N NDP . . . C 2 -20.511 -21.775 10.988 1 85.54 ? C4N NDP 201 A 1 
HETATM 43 C C5N NDP . . . C 2 -21.889 -21.559 11.078 1 85.49 ? C5N NDP 201 A 1 
HETATM 44 C C6N NDP . . . C 2 -22.602 -21.099 9.969 1 85.69 ? C6N NDP 201 A 1 
HETATM 45 P P2B NDP . . . C 2 -34.985 -15.16 13.778 1 112.52 ? P2B NDP 201 A 1 
HETATM 46 O O1X NDP . . . C 2 -35.29 -14.308 12.567 1 112.64 ? O1X NDP 201 A 1 
HETATM 47 O O2X NDP . . . C 2 -35.739 -16.463 13.681 1 112.59 ? O2X NDP 201 A 1 
HETATM 48 O O3X NDP . . . C 2 -35.386 -14.443 15.049 1 112.39 ? O3X NDP 201 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           960 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           48 
#