data_3LG4
#
_model_server_result.job_id            X6R0Yhx4Cr9POUCeOEx1Bw 
_model_server_result.datetime_utc      '2024-11-30 17:04:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lg4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    3LG4 
#
_exptl.entry_id    3LG4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3LG4 
_cell.length_a            88.752 
_cell.length_b            88.752 
_cell.length_c            103.167 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LG4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 279 n n 
PA O2A NDP sing 280 n n 
PA O5B NDP sing 281 n n 
PA O3 NDP sing 282 n n 
O2A HOA2 NDP sing 283 n n 
O5B C5B NDP sing 284 n n 
C5B C4B NDP sing 285 n n 
C5B H51A NDP sing 286 n n 
C5B H52A NDP sing 287 n n 
C4B O4B NDP sing 288 n n 
C4B C3B NDP sing 289 n n 
C4B H4B NDP sing 290 n n 
O4B C1B NDP sing 291 n n 
C3B O3B NDP sing 292 n n 
C3B C2B NDP sing 293 n n 
C3B H3B NDP sing 294 n n 
O3B HO3A NDP sing 295 n n 
C2B O2B NDP sing 296 n n 
C2B C1B NDP sing 297 n n 
C2B H2B NDP sing 298 n n 
O2B P2B NDP sing 299 n n 
C1B N9A NDP sing 300 n n 
C1B H1B NDP sing 301 n n 
N9A C8A NDP sing 302 n y 
N9A C4A NDP sing 303 n y 
C8A N7A NDP doub 304 n y 
C8A H8A NDP sing 305 n n 
N7A C5A NDP sing 306 n y 
C5A C6A NDP sing 307 n y 
C5A C4A NDP doub 308 n y 
C6A N6A NDP sing 309 n n 
C6A N1A NDP doub 310 n y 
N6A H61A NDP sing 311 n n 
N6A H62A NDP sing 312 n n 
N1A C2A NDP sing 313 n y 
C2A N3A NDP doub 314 n y 
C2A H2A NDP sing 315 n n 
N3A C4A NDP sing 316 n y 
O3 PN NDP sing 317 n n 
PN O1N NDP doub 318 n n 
PN O2N NDP sing 319 n n 
PN O5D NDP sing 320 n n 
O2N H21N NDP sing 321 n n 
O5D C5D NDP sing 322 n n 
C5D C4D NDP sing 323 n n 
C5D H51N NDP sing 324 n n 
C5D H52N NDP sing 325 n n 
C4D O4D NDP sing 326 n n 
C4D C3D NDP sing 327 n n 
C4D H4D NDP sing 328 n n 
O4D C1D NDP sing 329 n n 
C3D O3D NDP sing 330 n n 
C3D C2D NDP sing 331 n n 
C3D H3D NDP sing 332 n n 
O3D HO3N NDP sing 333 n n 
C2D O2D NDP sing 334 n n 
C2D C1D NDP sing 335 n n 
C2D H2D NDP sing 336 n n 
O2D HO2N NDP sing 337 n n 
C1D N1N NDP sing 338 n n 
C1D H1D NDP sing 339 n n 
N1N C2N NDP sing 340 n n 
N1N C6N NDP sing 341 n n 
C2N C3N NDP doub 342 n n 
C2N H2N NDP sing 343 n n 
C3N C7N NDP sing 344 n n 
C3N C4N NDP sing 345 n n 
C7N O7N NDP doub 346 n n 
C7N N7N NDP sing 347 n n 
N7N H71N NDP sing 348 n n 
N7N H72N NDP sing 349 n n 
C4N C5N NDP sing 350 n n 
C4N H41N NDP sing 351 n n 
C4N H42N NDP sing 352 n n 
C5N C6N NDP doub 353 n n 
C5N H5N NDP sing 354 n n 
C6N H6N NDP sing 355 n n 
P2B O1X NDP doub 356 n n 
P2B O2X NDP sing 357 n n 
P2B O3X NDP sing 358 n n 
O2X HOP2 NDP sing 359 n n 
O3X HOP3 NDP sing 360 n n 
#
_atom_sites.entry_id                     3LG4 
_atom_sites.fract_transf_matrix[1][1]    0.011267 
_atom_sites.fract_transf_matrix[1][2]    0.006505 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01301 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 201 207 NDP NAP . 
D 3 52V A 1 202 1 52V 52V . 
E 2 NDP B 1 201 207 NDP NAP . 
F 3 52V B 1 202 1 52V 52V . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . E 2 13.285 -29.469 -13.696 1 88.25 ? PA NDP 201 B 1 
HETATM 2 O O1A NDP . . . E 2 13.192 -28.104 -14.271 1 87.83 ? O1A NDP 201 B 1 
HETATM 3 O O2A NDP . . . E 2 12.323 -30.38 -14.338 1 88.3 ? O2A NDP 201 B 1 
HETATM 4 O O5B NDP . . . E 2 14.773 -30.051 -13.842 1 89.94 ? O5B NDP 201 B 1 
HETATM 5 C C5B NDP . . . E 2 15.642 -29.48 -14.786 1 92.91 ? C5B NDP 201 B 1 
HETATM 6 C C4B NDP . . . E 2 16.75 -30.461 -15.127 1 95.11 ? C4B NDP 201 B 1 
HETATM 7 O O4B NDP . . . E 2 16.964 -30.454 -16.526 1 95.64 ? O4B NDP 201 B 1 
HETATM 8 C C3B NDP . . . E 2 18.035 -30.026 -14.438 1 96.37 ? C3B NDP 201 B 1 
HETATM 9 O O3B NDP . . . E 2 18.542 -31.061 -13.627 1 96.9 ? O3B NDP 201 B 1 
HETATM 10 C C2B NDP . . . E 2 19.004 -29.677 -15.551 1 97.18 ? C2B NDP 201 B 1 
HETATM 11 O O2B NDP . . . E 2 20.242 -30.371 -15.458 1 98.48 ? O2B NDP 201 B 1 
HETATM 12 C C1B NDP . . . E 2 18.245 -29.947 -16.843 1 96.86 ? C1B NDP 201 B 1 
HETATM 13 N N9A NDP . . . E 2 18.157 -28.669 -17.551 1 96.88 ? N9A NDP 201 B 1 
HETATM 14 C C8A NDP . . . E 2 17.265 -27.649 -17.346 1 96.98 ? C8A NDP 201 B 1 
HETATM 15 N N7A NDP . . . E 2 17.563 -26.658 -18.215 1 97.27 ? N7A NDP 201 B 1 
HETATM 16 C C5A NDP . . . E 2 18.633 -27.033 -18.96 1 97.25 ? C5A NDP 201 B 1 
HETATM 17 C C6A NDP . . . E 2 19.345 -26.418 -19.988 1 97.16 ? C6A NDP 201 B 1 
HETATM 18 N N6A NDP . . . E 2 19.002 -25.207 -20.412 1 97.13 ? N6A NDP 201 B 1 
HETATM 19 N N1A NDP . . . E 2 20.419 -27.071 -20.571 1 97.29 ? N1A NDP 201 B 1 
HETATM 20 C C2A NDP . . . E 2 20.787 -28.335 -20.14 1 97.32 ? C2A NDP 201 B 1 
HETATM 21 N N3A NDP . . . E 2 20.074 -28.941 -19.123 1 97.32 ? N3A NDP 201 B 1 
HETATM 22 C C4A NDP . . . E 2 19.018 -28.301 -18.548 1 97.25 ? C4A NDP 201 B 1 
HETATM 23 O O3 NDP . . . E 2 13.062 -29.468 -12.107 1 87.09 ? O3 NDP 201 B 1 
HETATM 24 P PN NDP . . . E 2 12.881 -28.292 -11.02 1 86.34 ? PN NDP 201 B 1 
HETATM 25 O O1N NDP . . . E 2 13.726 -28.628 -9.85 1 85.76 ? O1N NDP 201 B 1 
HETATM 26 O O2N NDP . . . E 2 13.056 -26.977 -11.682 1 86.06 ? O2N NDP 201 B 1 
HETATM 27 O O5D NDP . . . E 2 11.328 -28.464 -10.605 1 85.16 ? O5D NDP 201 B 1 
HETATM 28 C C5D NDP . . . E 2 10.822 -29.679 -10.083 1 83.57 ? C5D NDP 201 B 1 
HETATM 29 C C4D NDP . . . E 2 9.606 -29.369 -9.217 1 82.63 ? C4D NDP 201 B 1 
HETATM 30 O O4D NDP . . . E 2 8.596 -28.784 -10.009 1 81.98 ? O4D NDP 201 B 1 
HETATM 31 C C3D NDP . . . E 2 8.991 -30.601 -8.567 1 82.41 ? C3D NDP 201 B 1 
HETATM 32 O O3D NDP . . . E 2 8.687 -30.304 -7.217 1 82.24 ? O3D NDP 201 B 1 
HETATM 33 C C2D NDP . . . E 2 7.717 -30.849 -9.346 1 81.92 ? C2D NDP 201 B 1 
HETATM 34 O O2D NDP . . . E 2 6.699 -31.4 -8.542 1 82.03 ? O2D NDP 201 B 1 
HETATM 35 C C1D NDP . . . E 2 7.365 -29.447 -9.802 1 81.83 ? C1D NDP 201 B 1 
HETATM 36 N N1N NDP . . . E 2 6.569 -29.42 -11.036 1 81.75 ? N1N NDP 201 B 1 
HETATM 37 C C2N NDP . . . E 2 5.299 -28.905 -10.974 1 81.93 ? C2N NDP 201 B 1 
HETATM 38 C C3N NDP . . . E 2 4.496 -28.84 -12.114 1 81.82 ? C3N NDP 201 B 1 
HETATM 39 C C7N NDP . . . E 2 3.125 -28.221 -12.062 1 81.58 ? C7N NDP 201 B 1 
HETATM 40 O O7N NDP . . . E 2 2.499 -27.848 -13.267 1 81.43 ? O7N NDP 201 B 1 
HETATM 41 N N7N NDP . . . E 2 2.53 -28.033 -10.881 1 81.28 ? N7N NDP 201 B 1 
HETATM 42 C C4N NDP . . . E 2 5.013 -29.3 -13.321 1 81.92 ? C4N NDP 201 B 1 
HETATM 43 C C5N NDP . . . E 2 6.311 -29.814 -13.372 1 81.76 ? C5N NDP 201 B 1 
HETATM 44 C C6N NDP . . . E 2 7.091 -29.866 -12.222 1 81.47 ? C6N NDP 201 B 1 
HETATM 45 P P2B NDP . . . E 2 20.538 -31.891 -15.932 1 99.15 ? P2B NDP 201 B 1 
HETATM 46 O O1X NDP . . . E 2 21.265 -32.575 -14.797 1 99.23 ? O1X NDP 201 B 1 
HETATM 47 O O2X NDP . . . E 2 19.28 -32.681 -16.219 1 99.23 ? O2X NDP 201 B 1 
HETATM 48 O O3X NDP . . . E 2 21.408 -31.842 -17.17 1 99.36 ? O3X NDP 201 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           513 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#