data_3LG4 # _model_server_result.job_id RUJYXHebLG6zcAgNi-7xPA _model_server_result.datetime_utc '2024-11-27 18:46:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 3LG4 # _exptl.entry_id 3LG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LG4 _cell.length_a 88.752 _cell.length_b 88.752 _cell.length_c 103.167 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C24 H26 N4 O' _chem_comp.formula_weight 386.489 _chem_comp.id 52V _chem_comp.mon_nstd_flag . _chem_comp.name "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C1 52V sing 1 n n N2 C1 52V doub 2 n y C1 C6 52V sing 3 n y C2 O17 52V sing 4 n n C2 H2 52V sing 5 n n C2 H2A 52V sing 6 n n C2 H2B 52V sing 7 n n N2 C3 52V sing 8 n y N7 C3 52V sing 9 n n C3 N4 52V doub 10 n y C6 C10 52V sing 11 n n C6 C5 52V doub 12 n y C14 C12 52V sing 13 n n C11 C12 52V sing 14 n n C12 C13 52V sing 15 n n C12 H12 52V sing 16 n n C13 H13 52V sing 17 n n C13 H13A 52V sing 18 n n C13 H13B 52V sing 19 n n C15 C14 52V doub 20 n y C14 C19 52V sing 21 n y C16 C15 52V sing 22 n y C15 H15 52V sing 23 n n O17 C16 52V sing 24 n n C16 C17 52V doub 25 n y C17 C18 52V sing 26 n y C17 H17 52V sing 27 n n C18 C25 52V sing 28 n y C18 C19 52V doub 29 n y C20 C26 52V sing 30 n n C26 H26 52V sing 31 n n C26 H26A 52V sing 32 n n C26 H26B 52V sing 33 n n C25 C20 52V doub 34 n y C20 C21 52V sing 35 n y C22 C21 52V doub 36 n y C21 H21 52V sing 37 n n C23 C22 52V sing 38 n y C22 H22 52V sing 39 n n C24 C23 52V doub 40 n y C23 H23 52V sing 41 n n C27 C24 52V sing 42 n n C24 C25 52V sing 43 n y C27 H27 52V sing 44 n n C27 H27A 52V sing 45 n n C27 H27B 52V sing 46 n n C19 H19 52V sing 47 n n C10 C11 52V trip 48 n n N4 C5 52V sing 49 n y C5 C8 52V sing 50 n n C8 H8 52V sing 51 n n C8 H8A 52V sing 52 n n C8 H8B 52V sing 53 n n N7 HN7 52V sing 54 n n N7 HN7A 52V sing 55 n n N9 HN9 52V sing 56 n n N9 HN9A 52V sing 57 n n # _atom_sites.entry_id 3LG4 _atom_sites.fract_transf_matrix[1][1] 0.011267 _atom_sites.fract_transf_matrix[1][2] 0.006505 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 201 207 NDP NAP . D 3 52V A 1 202 1 52V 52V . E 2 NDP B 1 201 207 NDP NAP . F 3 52V B 1 202 1 52V 52V . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 52V . . . F 3 1.553 -29.661 -15.464 0.5 69.06 ? C1 52V 202 B 1 HETATM 2 C C2 52V . . . F 3 2.033 -39.512 -14.201 0.5 70.66 ? C2 52V 202 B 1 HETATM 3 C C3 52V . . . F 3 -0.517 -28.662 -15.072 0.5 69.01 ? C3 52V 202 B 1 HETATM 4 C C6 52V . . . F 3 1.175 -30.743 -14.677 0.5 69.21 ? C6 52V 202 B 1 HETATM 5 C C12 52V . . . F 3 3.694 -33.958 -14.032 0.5 69.8 ? C12 52V 202 B 1 HETATM 6 C C13 52V . . . F 3 4.319 -34.347 -15.38 0.5 69.65 ? C13 52V 202 B 1 HETATM 7 C C14 52V . . . F 3 2.955 -35.162 -13.373 0.5 70.7 ? C14 52V 202 B 1 HETATM 8 C C15 52V . . . F 3 2.421 -36.207 -14.143 0.5 71.06 ? C15 52V 202 B 1 HETATM 9 C C16 52V . . . F 3 1.775 -37.288 -13.528 0.5 71.34 ? C16 52V 202 B 1 HETATM 10 C C17 52V . . . F 3 1.649 -37.325 -12.131 0.5 70.9 ? C17 52V 202 B 1 HETATM 11 C C18 52V . . . F 3 2.175 -36.293 -11.35 0.5 71.4 ? C18 52V 202 B 1 HETATM 12 C C26 52V . . . F 3 -0.442 -35.709 -10.132 0.5 72.45 ? C26 52V 202 B 1 HETATM 13 C C20 52V . . . F 3 0.815 -36.058 -9.326 0.5 72.48 ? C20 52V 202 B 1 HETATM 14 C C21 52V . . . F 3 0.693 -36.095 -7.932 0.5 72.37 ? C21 52V 202 B 1 HETATM 15 C C22 52V . . . F 3 1.789 -36.405 -7.135 0.5 72.06 ? C22 52V 202 B 1 HETATM 16 C C23 52V . . . F 3 3.015 -36.677 -7.74 0.5 72.38 ? C23 52V 202 B 1 HETATM 17 C C24 52V . . . F 3 3.155 -36.643 -9.131 0.5 72.29 ? C24 52V 202 B 1 HETATM 18 C C27 52V . . . F 3 4.543 -36.959 -9.708 0.5 72.32 ? C27 52V 202 B 1 HETATM 19 C C25 52V . . . F 3 2.05 -36.333 -9.95 0.5 71.6 ? C25 52V 202 B 1 HETATM 20 C C19 52V . . . F 3 2.825 -35.218 -11.978 0.5 70.94 ? C19 52V 202 B 1 HETATM 21 O O17 52V . . . F 3 1.259 -38.297 -14.296 0.5 71.05 ? O17 52V 202 B 1 HETATM 22 C C11 52V . . . F 3 2.799 -32.811 -14.261 0.5 69.5 ? C11 52V 202 B 1 HETATM 23 C C10 52V . . . F 3 2.06 -31.851 -14.461 0.5 69.31 ? C10 52V 202 B 1 HETATM 24 C C5 52V . . . F 3 -0.09 -30.734 -14.101 0.5 69.15 ? C5 52V 202 B 1 HETATM 25 C C8 52V . . . F 3 -0.56 -31.899 -13.231 0.5 69.21 ? C8 52V 202 B 1 HETATM 26 N N4 52V . . . F 3 -0.905 -29.693 -14.311 0.5 69.02 ? N4 52V 202 B 1 HETATM 27 N N7 52V . . . F 3 -1.352 -27.652 -15.26 0.5 69.13 ? N7 52V 202 B 1 HETATM 28 N N2 52V . . . F 3 0.698 -28.643 -15.642 0.5 68.98 ? N2 52V 202 B 1 HETATM 29 N N9 52V . . . F 3 2.752 -29.625 -16.031 0.5 69.05 ? N9 52V 202 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #