data_3LGH # _model_server_result.job_id A1Ywd9GHfJmllKq5rerr1A _model_server_result.datetime_utc '2024-10-18 16:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lgh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":149}' # _entry.id 3LGH # _exptl.entry_id 3LGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LGH _cell.length_a 89.479 _cell.length_b 105.056 _cell.length_c 48.185 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LGH _atom_sites.fract_transf_matrix[1][1] 0.011176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NI A 1 149 149 NI NI . F 3 MG A 1 150 150 MG MG . G 2 NI B 1 149 149 NI NI . H 2 NI C 1 149 149 NI NI . I 2 NI D 1 149 149 NI NI . J 4 HOH A 1 151 151 HOH HOH . J 4 HOH A 2 152 152 HOH HOH . J 4 HOH A 3 153 153 HOH HOH . J 4 HOH A 4 154 154 HOH HOH . J 4 HOH A 5 155 155 HOH HOH . J 4 HOH A 6 156 156 HOH HOH . J 4 HOH A 7 157 157 HOH HOH . J 4 HOH A 8 158 158 HOH HOH . J 4 HOH A 9 159 159 HOH HOH . J 4 HOH A 10 160 154 HOH HOH . J 4 HOH A 11 161 156 HOH HOH . J 4 HOH A 12 165 165 HOH HOH . K 4 HOH B 1 150 150 HOH HOH . K 4 HOH B 2 151 151 HOH HOH . K 4 HOH B 3 152 152 HOH HOH . K 4 HOH B 4 153 153 HOH HOH . K 4 HOH B 5 155 155 HOH HOH . K 4 HOH B 6 156 156 HOH HOH . K 4 HOH B 7 157 157 HOH HOH . K 4 HOH B 8 158 158 HOH HOH . K 4 HOH B 9 159 159 HOH HOH . K 4 HOH B 10 160 160 HOH HOH . K 4 HOH B 11 161 161 HOH HOH . K 4 HOH B 12 162 162 HOH HOH . K 4 HOH B 13 163 163 HOH HOH . K 4 HOH B 14 165 165 HOH HOH . K 4 HOH B 15 166 166 HOH HOH . K 4 HOH B 16 167 167 HOH HOH . K 4 HOH B 17 168 168 HOH HOH . K 4 HOH B 18 169 169 HOH HOH . K 4 HOH B 19 170 170 HOH HOH . K 4 HOH B 20 171 171 HOH HOH . K 4 HOH B 21 172 172 HOH HOH . L 4 HOH C 1 150 150 HOH HOH . L 4 HOH C 2 151 151 HOH HOH . L 4 HOH C 3 152 152 HOH HOH . L 4 HOH C 4 153 153 HOH HOH . L 4 HOH C 5 154 154 HOH HOH . L 4 HOH C 6 155 155 HOH HOH . L 4 HOH C 7 156 156 HOH HOH . L 4 HOH C 8 157 157 HOH HOH . L 4 HOH C 9 158 158 HOH HOH . L 4 HOH C 10 159 159 HOH HOH . M 4 HOH D 1 150 150 HOH HOH . M 4 HOH D 2 151 151 HOH HOH . M 4 HOH D 3 152 152 HOH HOH . M 4 HOH D 4 155 155 HOH HOH . M 4 HOH D 5 157 157 HOH HOH . M 4 HOH D 6 158 158 HOH HOH . M 4 HOH D 7 160 160 HOH HOH . M 4 HOH D 8 161 161 HOH HOH . M 4 HOH D 9 162 162 HOH HOH . M 4 HOH D 10 163 163 HOH HOH . M 4 HOH D 11 164 164 HOH HOH . M 4 HOH D 12 166 166 HOH HOH . M 4 HOH D 13 167 167 HOH HOH . M 4 HOH D 14 168 168 HOH HOH . M 4 HOH D 15 169 169 HOH HOH . M 4 HOH D 16 170 170 HOH HOH . M 4 HOH D 17 171 171 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.199 _atom_site.Cartn_y -6.735 _atom_site.Cartn_z 24.818 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 149 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #