data_3LGN # _model_server_result.job_id bhtAESNXXl8qEKboQCoB3Q _model_server_result.datetime_utc '2025-08-31 01:53:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 3LGN # _exptl.entry_id 3LGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LGN _cell.length_a 58.24 _cell.length_b 66.78 _cell.length_c 69.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 76 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc2 D O1 OXY . A OXY 109 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 D O2 OXY . A OXY 109 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc4 B NE2 HIS 78 B HIS 76 1_555 E FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc5 F O1 OXY . B OXY 109 1_555 E FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc6 F O2 OXY . B OXY 109 1_555 E FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc7 G MG MG . B MG 600 1_555 I O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc8 G MG MG . B MG 600 1_555 I O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc9 G MG MG . B MG 600 1_555 I O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc10 G MG MG . B MG 600 1_555 I O HOH . B HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc11 G MG MG . B MG 600 1_555 I O HOH . B HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc12 G MG MG . B MG 600 1_555 I O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LGN _atom_sites.fract_transf_matrix[1][1] 0.01717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 200 200 HEM HEM . D 3 OXY A 1 109 1 OXY OXY . E 2 HEM B 1 200 200 HEM HEM . F 3 OXY B 1 109 1 OXY OXY . G 4 MG B 1 600 600 MG MG . H 5 HOH A 1 110 2 HOH HOH . H 5 HOH A 2 111 3 HOH HOH . H 5 HOH A 3 112 4 HOH HOH . H 5 HOH A 4 113 5 HOH HOH . H 5 HOH A 5 114 6 HOH HOH . H 5 HOH A 6 115 7 HOH HOH . H 5 HOH A 7 116 8 HOH HOH . H 5 HOH A 8 117 9 HOH HOH . H 5 HOH A 9 118 10 HOH HOH . H 5 HOH A 10 119 11 HOH HOH . H 5 HOH A 11 120 12 HOH HOH . H 5 HOH A 12 121 121 HOH HOH . H 5 HOH A 13 122 13 HOH HOH . H 5 HOH A 14 123 14 HOH HOH . H 5 HOH A 15 124 16 HOH HOH . H 5 HOH A 16 125 18 HOH HOH . H 5 HOH A 17 126 19 HOH HOH . H 5 HOH A 18 127 20 HOH HOH . H 5 HOH A 19 128 21 HOH HOH . H 5 HOH A 20 129 27 HOH HOH . H 5 HOH A 21 130 28 HOH HOH . H 5 HOH A 22 131 29 HOH HOH . H 5 HOH A 23 132 30 HOH HOH . H 5 HOH A 24 133 31 HOH HOH . H 5 HOH A 25 134 32 HOH HOH . H 5 HOH A 26 135 34 HOH HOH . H 5 HOH A 27 136 35 HOH HOH . H 5 HOH A 28 137 40 HOH HOH . H 5 HOH A 29 138 41 HOH HOH . H 5 HOH A 30 139 42 HOH HOH . H 5 HOH A 31 140 43 HOH HOH . H 5 HOH A 32 141 45 HOH HOH . H 5 HOH A 33 142 46 HOH HOH . H 5 HOH A 34 143 47 HOH HOH . H 5 HOH A 35 144 48 HOH HOH . H 5 HOH A 36 145 49 HOH HOH . H 5 HOH A 37 146 146 HOH HOH . H 5 HOH A 38 147 147 HOH HOH . H 5 HOH A 39 148 50 HOH HOH . H 5 HOH A 40 149 149 HOH HOH . H 5 HOH A 41 150 51 HOH HOH . H 5 HOH A 42 151 52 HOH HOH . H 5 HOH A 43 152 152 HOH HOH . H 5 HOH A 44 153 153 HOH HOH . H 5 HOH A 45 154 53 HOH HOH . H 5 HOH A 46 155 54 HOH HOH . H 5 HOH A 47 156 55 HOH HOH . H 5 HOH A 48 157 58 HOH HOH . H 5 HOH A 49 158 61 HOH HOH . H 5 HOH A 50 159 62 HOH HOH . H 5 HOH A 51 160 65 HOH HOH . H 5 HOH A 52 161 67 HOH HOH . H 5 HOH A 53 162 162 HOH HOH . H 5 HOH A 54 163 163 HOH HOH . H 5 HOH A 55 164 68 HOH HOH . H 5 HOH A 56 165 69 HOH HOH . H 5 HOH A 57 166 70 HOH HOH . H 5 HOH A 58 167 71 HOH HOH . H 5 HOH A 59 168 168 HOH HOH . H 5 HOH A 60 169 72 HOH HOH . H 5 HOH A 61 170 170 HOH HOH . H 5 HOH A 62 171 74 HOH HOH . H 5 HOH A 63 172 77 HOH HOH . H 5 HOH A 64 173 78 HOH HOH . H 5 HOH A 65 174 174 HOH HOH . H 5 HOH A 66 175 175 HOH HOH . H 5 HOH A 67 176 176 HOH HOH . H 5 HOH A 68 177 177 HOH HOH . H 5 HOH A 69 178 82 HOH HOH . H 5 HOH A 70 179 179 HOH HOH . H 5 HOH A 71 180 180 HOH HOH . H 5 HOH A 72 181 181 HOH HOH . H 5 HOH A 73 182 83 HOH HOH . H 5 HOH A 74 183 200 HOH HOH . H 5 HOH A 75 184 184 HOH HOH . H 5 HOH A 76 185 2 HOH HOH . H 5 HOH A 77 186 3 HOH HOH . H 5 HOH A 78 187 187 HOH HOH . H 5 HOH A 79 188 7 HOH HOH . H 5 HOH A 80 189 8 HOH HOH . H 5 HOH A 81 190 9 HOH HOH . H 5 HOH A 82 191 11 HOH HOH . H 5 HOH A 83 192 192 HOH HOH . H 5 HOH A 84 193 12 HOH HOH . H 5 HOH A 85 194 14 HOH HOH . H 5 HOH A 86 195 15 HOH HOH . H 5 HOH A 87 196 196 HOH HOH . H 5 HOH A 88 197 16 HOH HOH . H 5 HOH A 89 198 198 HOH HOH . H 5 HOH A 90 199 199 HOH HOH . H 5 HOH A 91 201 201 HOH HOH . H 5 HOH A 92 202 202 HOH HOH . H 5 HOH A 93 203 17 HOH HOH . H 5 HOH A 94 204 20 HOH HOH . H 5 HOH A 95 205 205 HOH HOH . H 5 HOH A 96 206 206 HOH HOH . H 5 HOH A 97 207 207 HOH HOH . H 5 HOH A 98 208 208 HOH HOH . H 5 HOH A 99 209 25 HOH HOH . H 5 HOH A 100 210 29 HOH HOH . H 5 HOH A 101 211 31 HOH HOH . H 5 HOH A 102 212 33 HOH HOH . H 5 HOH A 103 213 37 HOH HOH . H 5 HOH A 104 214 38 HOH HOH . H 5 HOH A 105 215 39 HOH HOH . H 5 HOH A 106 216 41 HOH HOH . H 5 HOH A 107 217 42 HOH HOH . H 5 HOH A 108 218 43 HOH HOH . H 5 HOH A 109 219 44 HOH HOH . H 5 HOH A 110 220 46 HOH HOH . H 5 HOH A 111 221 47 HOH HOH . H 5 HOH A 112 222 48 HOH HOH . H 5 HOH A 113 223 53 HOH HOH . H 5 HOH A 114 224 55 HOH HOH . H 5 HOH A 115 225 56 HOH HOH . H 5 HOH A 116 226 59 HOH HOH . H 5 HOH A 117 227 60 HOH HOH . H 5 HOH A 118 228 61 HOH HOH . H 5 HOH A 119 229 65 HOH HOH . H 5 HOH A 120 230 66 HOH HOH . H 5 HOH A 121 231 67 HOH HOH . H 5 HOH A 122 232 69 HOH HOH . H 5 HOH A 123 233 75 HOH HOH . H 5 HOH A 124 234 77 HOH HOH . H 5 HOH A 125 235 79 HOH HOH . H 5 HOH A 126 236 80 HOH HOH . H 5 HOH A 127 237 82 HOH HOH . H 5 HOH A 128 238 84 HOH HOH . H 5 HOH A 129 239 85 HOH HOH . H 5 HOH A 130 240 88 HOH HOH . H 5 HOH A 131 241 91 HOH HOH . H 5 HOH A 132 242 92 HOH HOH . H 5 HOH A 133 243 93 HOH HOH . I 5 HOH B 1 110 110 HOH HOH . I 5 HOH B 2 111 111 HOH HOH . I 5 HOH B 3 112 112 HOH HOH . I 5 HOH B 4 113 1 HOH HOH . I 5 HOH B 5 114 22 HOH HOH . I 5 HOH B 6 115 115 HOH HOH . I 5 HOH B 7 116 116 HOH HOH . I 5 HOH B 8 117 117 HOH HOH . I 5 HOH B 9 118 118 HOH HOH . I 5 HOH B 10 119 119 HOH HOH . I 5 HOH B 11 120 120 HOH HOH . I 5 HOH B 12 121 23 HOH HOH . I 5 HOH B 13 122 122 HOH HOH . I 5 HOH B 14 123 123 HOH HOH . I 5 HOH B 15 124 124 HOH HOH . I 5 HOH B 16 125 125 HOH HOH . I 5 HOH B 17 126 126 HOH HOH . I 5 HOH B 18 127 127 HOH HOH . I 5 HOH B 19 128 128 HOH HOH . I 5 HOH B 20 129 129 HOH HOH . I 5 HOH B 21 130 130 HOH HOH . I 5 HOH B 22 131 131 HOH HOH . I 5 HOH B 23 132 132 HOH HOH . I 5 HOH B 24 133 133 HOH HOH . I 5 HOH B 25 134 134 HOH HOH . I 5 HOH B 26 135 135 HOH HOH . I 5 HOH B 27 136 136 HOH HOH . I 5 HOH B 28 137 137 HOH HOH . I 5 HOH B 29 138 138 HOH HOH . I 5 HOH B 30 139 139 HOH HOH . I 5 HOH B 31 140 140 HOH HOH . I 5 HOH B 32 141 141 HOH HOH . I 5 HOH B 33 142 142 HOH HOH . I 5 HOH B 34 143 143 HOH HOH . I 5 HOH B 35 144 144 HOH HOH . I 5 HOH B 36 145 24 HOH HOH . I 5 HOH B 37 146 25 HOH HOH . I 5 HOH B 38 147 26 HOH HOH . I 5 HOH B 39 148 148 HOH HOH . I 5 HOH B 40 149 33 HOH HOH . I 5 HOH B 41 150 150 HOH HOH . I 5 HOH B 42 151 151 HOH HOH . I 5 HOH B 43 152 36 HOH HOH . I 5 HOH B 44 153 37 HOH HOH . I 5 HOH B 45 154 154 HOH HOH . I 5 HOH B 46 155 155 HOH HOH . I 5 HOH B 47 156 156 HOH HOH . I 5 HOH B 48 157 157 HOH HOH . I 5 HOH B 49 158 158 HOH HOH . I 5 HOH B 50 159 159 HOH HOH . I 5 HOH B 51 160 160 HOH HOH . I 5 HOH B 52 161 161 HOH HOH . I 5 HOH B 53 162 39 HOH HOH . I 5 HOH B 54 163 57 HOH HOH . I 5 HOH B 55 164 164 HOH HOH . I 5 HOH B 56 165 165 HOH HOH . I 5 HOH B 57 166 166 HOH HOH . I 5 HOH B 58 167 167 HOH HOH . I 5 HOH B 59 168 60 HOH HOH . I 5 HOH B 60 169 169 HOH HOH . I 5 HOH B 61 170 73 HOH HOH . I 5 HOH B 62 171 171 HOH HOH . I 5 HOH B 63 172 172 HOH HOH . I 5 HOH B 64 173 173 HOH HOH . I 5 HOH B 65 174 75 HOH HOH . I 5 HOH B 66 175 76 HOH HOH . I 5 HOH B 67 176 79 HOH HOH . I 5 HOH B 68 177 80 HOH HOH . I 5 HOH B 69 178 178 HOH HOH . I 5 HOH B 70 179 81 HOH HOH . I 5 HOH B 71 180 85 HOH HOH . I 5 HOH B 72 181 86 HOH HOH . I 5 HOH B 73 182 87 HOH HOH . I 5 HOH B 74 183 183 HOH HOH . I 5 HOH B 75 184 88 HOH HOH . I 5 HOH B 76 185 89 HOH HOH . I 5 HOH B 77 186 186 HOH HOH . I 5 HOH B 78 187 90 HOH HOH . I 5 HOH B 79 188 188 HOH HOH . I 5 HOH B 80 189 189 HOH HOH . I 5 HOH B 81 190 190 HOH HOH . I 5 HOH B 82 191 191 HOH HOH . I 5 HOH B 83 192 91 HOH HOH . I 5 HOH B 84 193 193 HOH HOH . I 5 HOH B 85 194 194 HOH HOH . I 5 HOH B 86 195 195 HOH HOH . I 5 HOH B 87 196 92 HOH HOH . I 5 HOH B 88 197 95 HOH HOH . I 5 HOH B 89 198 96 HOH HOH . I 5 HOH B 90 199 97 HOH HOH . I 5 HOH B 91 201 98 HOH HOH . I 5 HOH B 92 202 99 HOH HOH . I 5 HOH B 93 203 203 HOH HOH . I 5 HOH B 94 204 204 HOH HOH . I 5 HOH B 95 205 101 HOH HOH . I 5 HOH B 96 206 105 HOH HOH . I 5 HOH B 97 207 106 HOH HOH . I 5 HOH B 98 208 107 HOH HOH . I 5 HOH B 99 209 108 HOH HOH . I 5 HOH B 100 210 109 HOH HOH . I 5 HOH B 101 211 1 HOH HOH . I 5 HOH B 102 212 4 HOH HOH . I 5 HOH B 103 213 5 HOH HOH . I 5 HOH B 104 214 6 HOH HOH . I 5 HOH B 105 215 10 HOH HOH . I 5 HOH B 106 216 13 HOH HOH . I 5 HOH B 107 217 18 HOH HOH . I 5 HOH B 108 218 19 HOH HOH . I 5 HOH B 109 219 21 HOH HOH . I 5 HOH B 110 220 22 HOH HOH . I 5 HOH B 111 221 23 HOH HOH . I 5 HOH B 112 222 24 HOH HOH . I 5 HOH B 113 223 27 HOH HOH . I 5 HOH B 114 224 28 HOH HOH . I 5 HOH B 115 225 32 HOH HOH . I 5 HOH B 116 226 34 HOH HOH . I 5 HOH B 117 227 36 HOH HOH . I 5 HOH B 118 228 40 HOH HOH . I 5 HOH B 119 229 45 HOH HOH . I 5 HOH B 120 230 49 HOH HOH . I 5 HOH B 121 231 50 HOH HOH . I 5 HOH B 122 232 52 HOH HOH . I 5 HOH B 123 233 54 HOH HOH . I 5 HOH B 124 234 57 HOH HOH . I 5 HOH B 125 235 58 HOH HOH . I 5 HOH B 126 236 62 HOH HOH . I 5 HOH B 127 237 63 HOH HOH . I 5 HOH B 128 238 64 HOH HOH . I 5 HOH B 129 239 68 HOH HOH . I 5 HOH B 130 240 70 HOH HOH . I 5 HOH B 131 241 71 HOH HOH . I 5 HOH B 132 242 72 HOH HOH . I 5 HOH B 133 243 73 HOH HOH . I 5 HOH B 134 244 74 HOH HOH . I 5 HOH B 135 245 76 HOH HOH . I 5 HOH B 136 246 78 HOH HOH . I 5 HOH B 137 247 81 HOH HOH . I 5 HOH B 138 248 83 HOH HOH . I 5 HOH B 139 249 86 HOH HOH . I 5 HOH B 140 250 87 HOH HOH . I 5 HOH B 141 251 89 HOH HOH . I 5 HOH B 142 252 90 HOH HOH . I 5 HOH B 143 601 601 HOH HOH . I 5 HOH B 144 602 602 HOH HOH . I 5 HOH B 145 603 603 HOH HOH . I 5 HOH B 146 604 604 HOH HOH . I 5 HOH B 147 605 605 HOH HOH . I 5 HOH B 148 606 606 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 22.986 _atom_site.Cartn_y -2.937 _atom_site.Cartn_z -4.751 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 600 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #