data_3LGP # _model_server_result.job_id G7iIkdRmlgAP9T5HkcPEJA _model_server_result.datetime_utc '2025-07-03 20:10:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3LGP # _exptl.entry_id 3LGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LGP _cell.length_a 73.344 _cell.length_b 76.618 _cell.length_c 103.506 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 225 1_555 A SG CYS 119 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 151 A CYS 365 1_555 A SG CYS 255 A CYS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 209 A CYS 423 1_555 A SG CYS 239 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 B SG CYS 11 B CYS 225 1_555 B SG CYS 119 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 B SG CYS 151 B CYS 365 1_555 B SG CYS 255 B CYS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 209 B CYS 423 1_555 B SG CYS 239 B CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A NE2 HIS 191 A HIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A NE2 HIS 195 A HIS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A NE2 HIS 201 A HIS 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 C ZN ZN . A ZN 1 1_555 D O26 50X . A 50X 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc5 C ZN ZN . A ZN 1 1_555 D O28 50X . A 50X 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 C ZN ZN . A ZN 1 1_555 D O29 50X . A 50X 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc7 E ZN ZN . B ZN 2 1_555 B NE2 HIS 191 B HIS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc8 E ZN ZN . B ZN 2 1_555 B NE2 HIS 195 B HIS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc9 E ZN ZN . B ZN 2 1_555 B NE2 HIS 201 B HIS 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc10 E ZN ZN . B ZN 2 1_555 F O26 50X . B 50X 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc11 E ZN ZN . B ZN 2 1_555 F O28 50X . B 50X 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc12 E ZN ZN . B ZN 2 1_555 F O29 50X . B 50X 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LGP _atom_sites.fract_transf_matrix[1][1] 0.013634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1 1 ZN ZN . D 3 50X A 1 485 1 50X 50X . E 2 ZN B 1 2 2 ZN ZN . F 3 50X B 1 485 2 50X 50X . G 4 HOH A 1 2 2 HOH HOH . G 4 HOH A 2 4 4 HOH HOH . G 4 HOH A 3 6 6 HOH HOH . G 4 HOH A 4 8 8 HOH HOH . G 4 HOH A 5 10 10 HOH HOH . G 4 HOH A 6 11 11 HOH HOH . G 4 HOH A 7 14 14 HOH HOH . G 4 HOH A 8 17 17 HOH HOH . G 4 HOH A 9 18 18 HOH HOH . G 4 HOH A 10 20 20 HOH HOH . G 4 HOH A 11 21 21 HOH HOH . G 4 HOH A 12 22 22 HOH HOH . G 4 HOH A 13 25 25 HOH HOH . G 4 HOH A 14 29 29 HOH HOH . G 4 HOH A 15 31 31 HOH HOH . G 4 HOH A 16 32 32 HOH HOH . G 4 HOH A 17 33 33 HOH HOH . G 4 HOH A 18 34 34 HOH HOH . G 4 HOH A 19 37 37 HOH HOH . G 4 HOH A 20 38 38 HOH HOH . G 4 HOH A 21 39 39 HOH HOH . G 4 HOH A 22 40 40 HOH HOH . G 4 HOH A 23 41 41 HOH HOH . G 4 HOH A 24 43 43 HOH HOH . G 4 HOH A 25 45 45 HOH HOH . G 4 HOH A 26 48 48 HOH HOH . G 4 HOH A 27 49 49 HOH HOH . G 4 HOH A 28 51 51 HOH HOH . G 4 HOH A 29 52 52 HOH HOH . G 4 HOH A 30 54 54 HOH HOH . G 4 HOH A 31 55 55 HOH HOH . G 4 HOH A 32 56 56 HOH HOH . G 4 HOH A 33 57 57 HOH HOH . G 4 HOH A 34 61 61 HOH HOH . G 4 HOH A 35 63 63 HOH HOH . G 4 HOH A 36 64 64 HOH HOH . G 4 HOH A 37 65 65 HOH HOH . G 4 HOH A 38 66 66 HOH HOH . G 4 HOH A 39 69 69 HOH HOH . G 4 HOH A 40 71 71 HOH HOH . G 4 HOH A 41 72 72 HOH HOH . G 4 HOH A 42 73 73 HOH HOH . G 4 HOH A 43 80 80 HOH HOH . G 4 HOH A 44 90 90 HOH HOH . G 4 HOH A 45 93 93 HOH HOH . G 4 HOH A 46 94 94 HOH HOH . G 4 HOH A 47 95 95 HOH HOH . G 4 HOH A 48 97 97 HOH HOH . G 4 HOH A 49 99 99 HOH HOH . G 4 HOH A 50 101 101 HOH HOH . G 4 HOH A 51 111 111 HOH HOH . G 4 HOH A 52 118 118 HOH HOH . G 4 HOH A 53 123 123 HOH HOH . G 4 HOH A 54 140 140 HOH HOH . G 4 HOH A 55 144 144 HOH HOH . G 4 HOH A 56 175 175 HOH HOH . G 4 HOH A 57 486 1 HOH HOH . G 4 HOH A 58 487 321 HOH HOH . G 4 HOH A 59 488 322 HOH HOH . G 4 HOH A 60 489 326 HOH HOH . G 4 HOH A 61 490 367 HOH HOH . G 4 HOH A 62 491 491 HOH HOH . G 4 HOH A 63 492 492 HOH HOH . G 4 HOH A 64 493 370 HOH HOH . G 4 HOH A 65 494 391 HOH HOH . G 4 HOH A 66 495 495 HOH HOH . G 4 HOH A 67 496 496 HOH HOH . G 4 HOH A 68 497 497 HOH HOH . G 4 HOH A 69 498 498 HOH HOH . G 4 HOH A 70 499 499 HOH HOH . G 4 HOH A 71 500 500 HOH HOH . G 4 HOH A 72 501 394 HOH HOH . G 4 HOH A 73 502 502 HOH HOH . G 4 HOH A 74 503 503 HOH HOH . G 4 HOH A 75 504 504 HOH HOH . G 4 HOH A 76 505 421 HOH HOH . G 4 HOH A 77 506 506 HOH HOH . G 4 HOH A 78 507 507 HOH HOH . G 4 HOH A 79 508 508 HOH HOH . G 4 HOH A 80 509 470 HOH HOH . G 4 HOH A 81 517 517 HOH HOH . G 4 HOH A 82 520 520 HOH HOH . G 4 HOH A 83 521 521 HOH HOH . G 4 HOH A 84 522 522 HOH HOH . G 4 HOH A 85 523 523 HOH HOH . G 4 HOH A 86 524 524 HOH HOH . G 4 HOH A 87 525 525 HOH HOH . G 4 HOH A 88 530 530 HOH HOH . G 4 HOH A 89 531 531 HOH HOH . G 4 HOH A 90 532 532 HOH HOH . G 4 HOH A 91 533 533 HOH HOH . G 4 HOH A 92 537 537 HOH HOH . G 4 HOH A 93 538 538 HOH HOH . G 4 HOH A 94 539 539 HOH HOH . G 4 HOH A 95 540 540 HOH HOH . G 4 HOH A 96 541 541 HOH HOH . G 4 HOH A 97 543 543 HOH HOH . G 4 HOH A 98 544 544 HOH HOH . G 4 HOH A 99 545 545 HOH HOH . G 4 HOH A 100 546 546 HOH HOH . G 4 HOH A 101 547 547 HOH HOH . G 4 HOH A 102 549 549 HOH HOH . G 4 HOH A 103 550 550 HOH HOH . G 4 HOH A 104 551 551 HOH HOH . G 4 HOH A 105 552 552 HOH HOH . G 4 HOH A 106 556 556 HOH HOH . G 4 HOH A 107 557 557 HOH HOH . G 4 HOH A 108 559 559 HOH HOH . G 4 HOH A 109 560 560 HOH HOH . G 4 HOH A 110 561 561 HOH HOH . G 4 HOH A 111 562 562 HOH HOH . G 4 HOH A 112 563 563 HOH HOH . G 4 HOH A 113 564 564 HOH HOH . G 4 HOH A 114 565 565 HOH HOH . G 4 HOH A 115 566 566 HOH HOH . G 4 HOH A 116 567 567 HOH HOH . G 4 HOH A 117 580 580 HOH HOH . G 4 HOH A 118 582 582 HOH HOH . G 4 HOH A 119 591 591 HOH HOH . G 4 HOH A 120 592 592 HOH HOH . H 4 HOH B 1 184 184 HOH HOH . H 4 HOH B 2 186 186 HOH HOH . H 4 HOH B 3 187 187 HOH HOH . H 4 HOH B 4 188 188 HOH HOH . H 4 HOH B 5 189 189 HOH HOH . H 4 HOH B 6 190 190 HOH HOH . H 4 HOH B 7 191 191 HOH HOH . H 4 HOH B 8 192 192 HOH HOH . H 4 HOH B 9 193 193 HOH HOH . H 4 HOH B 10 197 197 HOH HOH . H 4 HOH B 11 198 198 HOH HOH . H 4 HOH B 12 200 200 HOH HOH . H 4 HOH B 13 202 202 HOH HOH . H 4 HOH B 14 203 203 HOH HOH . H 4 HOH B 15 204 204 HOH HOH . H 4 HOH B 16 206 206 HOH HOH . H 4 HOH B 17 208 208 HOH HOH . H 4 HOH B 18 210 210 HOH HOH . H 4 HOH B 19 213 213 HOH HOH . H 4 HOH B 20 486 217 HOH HOH . H 4 HOH B 21 487 218 HOH HOH . H 4 HOH B 22 488 225 HOH HOH . H 4 HOH B 23 489 227 HOH HOH . H 4 HOH B 24 490 490 HOH HOH . H 4 HOH B 25 491 229 HOH HOH . H 4 HOH B 26 492 232 HOH HOH . H 4 HOH B 27 493 493 HOH HOH . H 4 HOH B 28 494 494 HOH HOH . H 4 HOH B 29 495 234 HOH HOH . H 4 HOH B 30 496 239 HOH HOH . H 4 HOH B 31 497 242 HOH HOH . H 4 HOH B 32 498 246 HOH HOH . H 4 HOH B 33 499 247 HOH HOH . H 4 HOH B 34 500 250 HOH HOH . H 4 HOH B 35 501 501 HOH HOH . H 4 HOH B 36 502 252 HOH HOH . H 4 HOH B 37 503 256 HOH HOH . H 4 HOH B 38 504 258 HOH HOH . H 4 HOH B 39 505 505 HOH HOH . H 4 HOH B 40 506 260 HOH HOH . H 4 HOH B 41 507 291 HOH HOH . H 4 HOH B 42 508 297 HOH HOH . H 4 HOH B 43 509 509 HOH HOH . H 4 HOH B 44 510 510 HOH HOH . H 4 HOH B 45 511 511 HOH HOH . H 4 HOH B 46 512 512 HOH HOH . H 4 HOH B 47 513 513 HOH HOH . H 4 HOH B 48 514 514 HOH HOH . H 4 HOH B 49 515 515 HOH HOH . H 4 HOH B 50 516 516 HOH HOH . H 4 HOH B 51 517 329 HOH HOH . H 4 HOH B 52 518 518 HOH HOH . H 4 HOH B 53 519 519 HOH HOH . H 4 HOH B 54 520 349 HOH HOH . H 4 HOH B 55 521 371 HOH HOH . H 4 HOH B 56 522 400 HOH HOH . H 4 HOH B 57 523 414 HOH HOH . H 4 HOH B 58 524 441 HOH HOH . H 4 HOH B 59 525 443 HOH HOH . H 4 HOH B 60 526 526 HOH HOH . H 4 HOH B 61 527 527 HOH HOH . H 4 HOH B 62 528 528 HOH HOH . H 4 HOH B 63 529 529 HOH HOH . H 4 HOH B 64 534 534 HOH HOH . H 4 HOH B 65 535 535 HOH HOH . H 4 HOH B 66 536 536 HOH HOH . H 4 HOH B 67 542 542 HOH HOH . H 4 HOH B 68 548 548 HOH HOH . H 4 HOH B 69 553 553 HOH HOH . H 4 HOH B 70 554 554 HOH HOH . H 4 HOH B 71 555 555 HOH HOH . H 4 HOH B 72 558 558 HOH HOH . H 4 HOH B 73 568 568 HOH HOH . H 4 HOH B 74 569 569 HOH HOH . H 4 HOH B 75 570 570 HOH HOH . H 4 HOH B 76 571 571 HOH HOH . H 4 HOH B 77 572 572 HOH HOH . H 4 HOH B 78 573 573 HOH HOH . H 4 HOH B 79 574 574 HOH HOH . H 4 HOH B 80 575 575 HOH HOH . H 4 HOH B 81 576 576 HOH HOH . H 4 HOH B 82 577 577 HOH HOH . H 4 HOH B 83 578 578 HOH HOH . H 4 HOH B 84 579 579 HOH HOH . H 4 HOH B 85 581 581 HOH HOH . H 4 HOH B 86 583 583 HOH HOH . H 4 HOH B 87 584 584 HOH HOH . H 4 HOH B 88 585 585 HOH HOH . H 4 HOH B 89 586 586 HOH HOH . H 4 HOH B 90 587 587 HOH HOH . H 4 HOH B 91 588 588 HOH HOH . H 4 HOH B 92 589 589 HOH HOH . H 4 HOH B 93 590 590 HOH HOH . H 4 HOH B 94 593 593 HOH HOH . H 4 HOH B 95 594 594 HOH HOH . H 4 HOH B 96 595 595 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.566 _atom_site.Cartn_y 12.47 _atom_site.Cartn_z 24.505 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #