data_3LGX # _model_server_result.job_id F69YGyK6p1rVLuAkZ75JBQ _model_server_result.datetime_utc '2025-04-03 15:34:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lgx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 3LGX # _exptl.entry_id 3LGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LGX _cell.length_a 174.41 _cell.length_b 174.41 _cell.length_c 176.065 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 3LGX _atom_sites.fract_transf_matrix[1][1] 0.005734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 600 600 ATP ATP . F 2 ATP B 1 600 600 ATP ATP . G 2 ATP C 1 600 600 ATP ATP . H 2 ATP D 1 600 600 ATP ATP . I 3 HOH A 1 517 9 HOH HOH . I 3 HOH A 2 518 12 HOH HOH . I 3 HOH A 3 519 15 HOH HOH . I 3 HOH A 4 520 19 HOH HOH . I 3 HOH A 5 521 25 HOH HOH . I 3 HOH A 6 522 28 HOH HOH . I 3 HOH A 7 523 32 HOH HOH . I 3 HOH A 8 524 34 HOH HOH . I 3 HOH A 9 525 36 HOH HOH . I 3 HOH A 10 526 38 HOH HOH . I 3 HOH A 11 527 49 HOH HOH . J 3 HOH B 1 517 1 HOH HOH . J 3 HOH B 2 518 13 HOH HOH . J 3 HOH B 3 519 14 HOH HOH . J 3 HOH B 4 520 17 HOH HOH . J 3 HOH B 5 521 21 HOH HOH . J 3 HOH B 6 522 22 HOH HOH . J 3 HOH B 7 523 24 HOH HOH . J 3 HOH B 8 524 27 HOH HOH . J 3 HOH B 9 525 30 HOH HOH . J 3 HOH B 10 526 31 HOH HOH . J 3 HOH B 11 527 33 HOH HOH . J 3 HOH B 12 528 35 HOH HOH . J 3 HOH B 13 529 37 HOH HOH . J 3 HOH B 14 530 44 HOH HOH . J 3 HOH B 15 531 45 HOH HOH . J 3 HOH B 16 532 46 HOH HOH . J 3 HOH B 17 533 48 HOH HOH . K 3 HOH C 1 517 4 HOH HOH . K 3 HOH C 2 518 5 HOH HOH . K 3 HOH C 3 519 7 HOH HOH . K 3 HOH C 4 520 10 HOH HOH . K 3 HOH C 5 521 16 HOH HOH . K 3 HOH C 6 522 18 HOH HOH . K 3 HOH C 7 523 20 HOH HOH . K 3 HOH C 8 524 26 HOH HOH . K 3 HOH C 9 525 42 HOH HOH . L 3 HOH D 1 517 2 HOH HOH . L 3 HOH D 2 518 3 HOH HOH . L 3 HOH D 3 519 6 HOH HOH . L 3 HOH D 4 520 8 HOH HOH . L 3 HOH D 5 521 11 HOH HOH . L 3 HOH D 6 522 23 HOH HOH . L 3 HOH D 7 523 29 HOH HOH . L 3 HOH D 8 524 39 HOH HOH . L 3 HOH D 9 525 40 HOH HOH . L 3 HOH D 10 526 41 HOH HOH . L 3 HOH D 11 527 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 2 85.142 109.285 0.926 1 63.55 ? PG ATP 600 C 1 HETATM 2 O O1G ATP . . . G 2 84.119 108.533 0.098 1 62.4 ? O1G ATP 600 C 1 HETATM 3 O O2G ATP . . . G 2 84.671 109.686 2.314 1 64.04 ? O2G ATP 600 C 1 HETATM 4 O O3G ATP . . . G 2 86.51 108.628 1.003 1 64.17 ? O3G ATP 600 C 1 HETATM 5 P PB ATP . . . G 2 86.019 111.956 0.827 1 54.59 ? PB ATP 600 C 1 HETATM 6 O O1B ATP . . . G 2 86.501 112.925 -0.237 1 53.41 ? O1B ATP 600 C 1 HETATM 7 O O2B ATP . . . G 2 86.932 111.514 1.968 1 57.36 ? O2B ATP 600 C 1 HETATM 8 O O3B ATP . . . G 2 85.357 110.677 0.115 1 56.69 ? O3B ATP 600 C 1 HETATM 9 P PA ATP . . . G 2 83.365 113.056 1.271 1 44.38 ? PA ATP 600 C 1 HETATM 10 O O1A ATP . . . G 2 82.862 113.921 2.387 1 48.61 ? O1A ATP 600 C 1 HETATM 11 O O2A ATP . . . G 2 82.595 111.815 0.877 1 43.32 ? O2A ATP 600 C 1 HETATM 12 O O3A ATP . . . G 2 84.862 112.668 1.703 1 50.91 ? O3A ATP 600 C 1 HETATM 13 O O5' ATP . . . G 2 83.619 114.029 0.012 1 43.9 ? O5' ATP 600 C 1 HETATM 14 C C5' ATP . . . G 2 83.048 115.33 -0.1 1 42.69 ? C5' ATP 600 C 1 HETATM 15 C C4' ATP . . . G 2 83.784 116.064 -1.212 1 42.63 ? C4' ATP 600 C 1 HETATM 16 O O4' ATP . . . G 2 83.411 115.523 -2.49 1 40.54 ? O4' ATP 600 C 1 HETATM 17 C C3' ATP . . . G 2 83.472 117.548 -1.306 1 41.82 ? C3' ATP 600 C 1 HETATM 18 O O3' ATP . . . G 2 84.341 118.357 -0.521 1 42.38 ? O3' ATP 600 C 1 HETATM 19 C C2' ATP . . . G 2 83.686 117.852 -2.77 1 41.47 ? C2' ATP 600 C 1 HETATM 20 O O2' ATP . . . G 2 85.073 117.946 -3.058 1 41.46 ? O2' ATP 600 C 1 HETATM 21 C C1' ATP . . . G 2 83.271 116.572 -3.438 1 39.89 ? C1' ATP 600 C 1 HETATM 22 N N9 ATP . . . G 2 81.869 116.679 -3.897 1 39.11 ? N9 ATP 600 C 1 HETATM 23 C C8 ATP . . . G 2 80.789 116.191 -3.278 1 38.19 ? C8 ATP 600 C 1 HETATM 24 N N7 ATP . . . G 2 79.67 116.434 -4.003 1 38.93 ? N7 ATP 600 C 1 HETATM 25 C C5 ATP . . . G 2 80.027 117.106 -5.104 1 37.48 ? C5 ATP 600 C 1 HETATM 26 C C6 ATP . . . G 2 79.352 117.649 -6.282 1 34.92 ? C6 ATP 600 C 1 HETATM 27 N N6 ATP . . . G 2 78.017 117.582 -6.404 1 30.9 ? N6 ATP 600 C 1 HETATM 28 N N1 ATP . . . G 2 80.108 118.262 -7.218 1 38.69 ? N1 ATP 600 C 1 HETATM 29 C C2 ATP . . . G 2 81.434 118.411 -7.102 1 39.09 ? C2 ATP 600 C 1 HETATM 30 N N3 ATP . . . G 2 82.109 117.904 -6.057 1 40 ? N3 ATP 600 C 1 HETATM 31 C C4 ATP . . . G 2 81.477 117.259 -5.041 1 39.17 ? C4 ATP 600 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #