data_3LI8 # _model_server_result.job_id 9O8i-y-S5qJf4-QkSOChZA _model_server_result.datetime_utc '2025-03-04 09:37:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3li8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4}' # _entry.id 3LI8 # _exptl.entry_id 3LI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LI8 _cell.length_a 67.456 _cell.length_b 87.693 _cell.length_c 99.002 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 67.456 0 49.501 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 20 A GLU 49 1_555 A N MSE 21 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 21 A MSE 50 1_555 A N ALA 22 A ALA 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C GLN 32 A GLN 61 1_555 A N MSE 33 A MSE 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 A C MSE 33 A MSE 62 1_555 A N GLU 34 A GLU 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale5 A C THR 46 A THR 75 1_555 A N MSE 47 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 47 A MSE 76 1_555 A N ALA 48 A ALA 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 A C ALA 58 A ALA 87 1_555 A N MSE 59 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale8 A C MSE 59 A MSE 88 1_555 A N SER 60 A SER 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale9 A C PHE 149 A PHE 178 1_555 A N MSE 150 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C MSE 150 A MSE 179 1_555 A N VAL 151 A VAL 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale11 A C PHE 192 A PHE 221 1_555 A N MSE 193 A MSE 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 A C MSE 193 A MSE 222 1_555 A N VAL 194 A VAL 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale13 A C ILE 250 A ILE 279 1_555 A N MSE 251 A MSE 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale14 A C MSE 251 A MSE 280 1_555 A N PHE 252 A PHE 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 A C GLU 271 A GLU 300 1_555 A N MSE 272 A MSE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale16 A C MSE 272 A MSE 301 1_555 A N LEU 273 A LEU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3LI8 _atom_sites.fract_transf_matrix[1][1] 0.014824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1 1 EDO EDO . C 2 EDO A 1 2 2 EDO EDO . D 2 EDO A 1 3 3 EDO EDO . E 2 EDO A 1 4 4 EDO EDO . F 3 SO4 A 1 5 5 SO4 SO4 . G 3 SO4 A 1 6 6 SO4 SO4 . H 4 HOH A 1 7 7 HOH HOH . H 4 HOH A 2 8 8 HOH HOH . H 4 HOH A 3 9 9 HOH HOH . H 4 HOH A 4 10 10 HOH HOH . H 4 HOH A 5 11 11 HOH HOH . H 4 HOH A 6 12 12 HOH HOH . H 4 HOH A 7 13 13 HOH HOH . H 4 HOH A 8 14 14 HOH HOH . H 4 HOH A 9 15 15 HOH HOH . H 4 HOH A 10 16 16 HOH HOH . H 4 HOH A 11 17 17 HOH HOH . H 4 HOH A 12 18 18 HOH HOH . H 4 HOH A 13 19 19 HOH HOH . H 4 HOH A 14 20 20 HOH HOH . H 4 HOH A 15 21 21 HOH HOH . H 4 HOH A 16 22 22 HOH HOH . H 4 HOH A 17 23 23 HOH HOH . H 4 HOH A 18 24 24 HOH HOH . H 4 HOH A 19 25 25 HOH HOH . H 4 HOH A 20 26 26 HOH HOH . H 4 HOH A 21 27 27 HOH HOH . H 4 HOH A 22 28 28 HOH HOH . H 4 HOH A 23 29 29 HOH HOH . H 4 HOH A 24 321 321 HOH HOH . H 4 HOH A 25 322 322 HOH HOH . H 4 HOH A 26 323 323 HOH HOH . H 4 HOH A 27 324 324 HOH HOH . H 4 HOH A 28 325 325 HOH HOH . H 4 HOH A 29 326 326 HOH HOH . H 4 HOH A 30 327 327 HOH HOH . H 4 HOH A 31 328 328 HOH HOH . H 4 HOH A 32 329 329 HOH HOH . H 4 HOH A 33 330 330 HOH HOH . H 4 HOH A 34 331 331 HOH HOH . H 4 HOH A 35 332 332 HOH HOH . H 4 HOH A 36 333 333 HOH HOH . H 4 HOH A 37 334 334 HOH HOH . H 4 HOH A 38 335 335 HOH HOH . H 4 HOH A 39 336 336 HOH HOH . H 4 HOH A 40 337 337 HOH HOH . H 4 HOH A 41 338 338 HOH HOH . H 4 HOH A 42 339 339 HOH HOH . H 4 HOH A 43 340 340 HOH HOH . H 4 HOH A 44 341 341 HOH HOH . H 4 HOH A 45 342 342 HOH HOH . H 4 HOH A 46 343 343 HOH HOH . H 4 HOH A 47 344 344 HOH HOH . H 4 HOH A 48 345 345 HOH HOH . H 4 HOH A 49 346 346 HOH HOH . H 4 HOH A 50 347 347 HOH HOH . H 4 HOH A 51 348 348 HOH HOH . H 4 HOH A 52 349 349 HOH HOH . H 4 HOH A 53 350 350 HOH HOH . H 4 HOH A 54 351 351 HOH HOH . H 4 HOH A 55 352 352 HOH HOH . H 4 HOH A 56 353 353 HOH HOH . H 4 HOH A 57 354 354 HOH HOH . H 4 HOH A 58 355 355 HOH HOH . H 4 HOH A 59 356 356 HOH HOH . H 4 HOH A 60 357 357 HOH HOH . H 4 HOH A 61 358 358 HOH HOH . H 4 HOH A 62 359 359 HOH HOH . H 4 HOH A 63 360 360 HOH HOH . H 4 HOH A 64 361 361 HOH HOH . H 4 HOH A 65 362 362 HOH HOH . H 4 HOH A 66 363 363 HOH HOH . H 4 HOH A 67 364 364 HOH HOH . H 4 HOH A 68 365 365 HOH HOH . H 4 HOH A 69 366 366 HOH HOH . H 4 HOH A 70 367 367 HOH HOH . H 4 HOH A 71 368 368 HOH HOH . H 4 HOH A 72 369 369 HOH HOH . H 4 HOH A 73 370 370 HOH HOH . H 4 HOH A 74 371 371 HOH HOH . H 4 HOH A 75 372 372 HOH HOH . H 4 HOH A 76 373 373 HOH HOH . H 4 HOH A 77 374 374 HOH HOH . H 4 HOH A 78 375 375 HOH HOH . H 4 HOH A 79 376 376 HOH HOH . H 4 HOH A 80 377 377 HOH HOH . H 4 HOH A 81 378 378 HOH HOH . H 4 HOH A 82 379 379 HOH HOH . H 4 HOH A 83 380 380 HOH HOH . H 4 HOH A 84 381 381 HOH HOH . H 4 HOH A 85 382 382 HOH HOH . H 4 HOH A 86 383 383 HOH HOH . H 4 HOH A 87 384 384 HOH HOH . H 4 HOH A 88 385 385 HOH HOH . H 4 HOH A 89 386 386 HOH HOH . H 4 HOH A 90 387 387 HOH HOH . H 4 HOH A 91 388 388 HOH HOH . H 4 HOH A 92 389 389 HOH HOH . H 4 HOH A 93 390 390 HOH HOH . H 4 HOH A 94 391 391 HOH HOH . H 4 HOH A 95 392 392 HOH HOH . H 4 HOH A 96 393 393 HOH HOH . H 4 HOH A 97 394 394 HOH HOH . H 4 HOH A 98 395 395 HOH HOH . H 4 HOH A 99 396 396 HOH HOH . H 4 HOH A 100 397 397 HOH HOH . H 4 HOH A 101 398 398 HOH HOH . H 4 HOH A 102 399 399 HOH HOH . H 4 HOH A 103 400 400 HOH HOH . H 4 HOH A 104 401 401 HOH HOH . H 4 HOH A 105 402 402 HOH HOH . H 4 HOH A 106 403 403 HOH HOH . H 4 HOH A 107 404 404 HOH HOH . H 4 HOH A 108 405 405 HOH HOH . H 4 HOH A 109 406 406 HOH HOH . H 4 HOH A 110 407 407 HOH HOH . H 4 HOH A 111 408 408 HOH HOH . H 4 HOH A 112 409 409 HOH HOH . H 4 HOH A 113 410 410 HOH HOH . H 4 HOH A 114 411 411 HOH HOH . H 4 HOH A 115 412 412 HOH HOH . H 4 HOH A 116 413 413 HOH HOH . H 4 HOH A 117 414 414 HOH HOH . H 4 HOH A 118 415 415 HOH HOH . H 4 HOH A 119 416 416 HOH HOH . H 4 HOH A 120 417 417 HOH HOH . H 4 HOH A 121 418 418 HOH HOH . H 4 HOH A 122 419 419 HOH HOH . H 4 HOH A 123 420 420 HOH HOH . H 4 HOH A 124 421 421 HOH HOH . H 4 HOH A 125 422 422 HOH HOH . H 4 HOH A 126 423 423 HOH HOH . H 4 HOH A 127 424 424 HOH HOH . H 4 HOH A 128 425 425 HOH HOH . H 4 HOH A 129 426 426 HOH HOH . H 4 HOH A 130 427 427 HOH HOH . H 4 HOH A 131 428 428 HOH HOH . H 4 HOH A 132 429 429 HOH HOH . H 4 HOH A 133 430 430 HOH HOH . H 4 HOH A 134 431 431 HOH HOH . H 4 HOH A 135 432 432 HOH HOH . H 4 HOH A 136 433 433 HOH HOH . H 4 HOH A 137 434 434 HOH HOH . H 4 HOH A 138 435 435 HOH HOH . H 4 HOH A 139 436 436 HOH HOH . H 4 HOH A 140 437 437 HOH HOH . H 4 HOH A 141 438 438 HOH HOH . H 4 HOH A 142 439 439 HOH HOH . H 4 HOH A 143 440 440 HOH HOH . H 4 HOH A 144 441 441 HOH HOH . H 4 HOH A 145 442 442 HOH HOH . H 4 HOH A 146 443 443 HOH HOH . H 4 HOH A 147 444 444 HOH HOH . H 4 HOH A 148 445 445 HOH HOH . H 4 HOH A 149 446 446 HOH HOH . H 4 HOH A 150 447 447 HOH HOH . H 4 HOH A 151 448 448 HOH HOH . H 4 HOH A 152 449 449 HOH HOH . H 4 HOH A 153 450 450 HOH HOH . H 4 HOH A 154 451 451 HOH HOH . H 4 HOH A 155 452 452 HOH HOH . H 4 HOH A 156 453 453 HOH HOH . H 4 HOH A 157 454 454 HOH HOH . H 4 HOH A 158 455 455 HOH HOH . H 4 HOH A 159 456 456 HOH HOH . H 4 HOH A 160 457 457 HOH HOH . H 4 HOH A 161 458 458 HOH HOH . H 4 HOH A 162 459 459 HOH HOH . H 4 HOH A 163 460 460 HOH HOH . H 4 HOH A 164 461 461 HOH HOH . H 4 HOH A 165 462 462 HOH HOH . H 4 HOH A 166 463 463 HOH HOH . H 4 HOH A 167 464 464 HOH HOH . H 4 HOH A 168 465 465 HOH HOH . H 4 HOH A 169 466 466 HOH HOH . H 4 HOH A 170 467 467 HOH HOH . H 4 HOH A 171 468 468 HOH HOH . H 4 HOH A 172 469 469 HOH HOH . H 4 HOH A 173 470 470 HOH HOH . H 4 HOH A 174 471 471 HOH HOH . H 4 HOH A 175 472 472 HOH HOH . H 4 HOH A 176 473 473 HOH HOH . H 4 HOH A 177 474 474 HOH HOH . H 4 HOH A 178 475 475 HOH HOH . H 4 HOH A 179 476 476 HOH HOH . H 4 HOH A 180 477 477 HOH HOH . H 4 HOH A 181 478 478 HOH HOH . H 4 HOH A 182 479 479 HOH HOH . H 4 HOH A 183 480 480 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 32.642 102.276 15.575 1 32.19 ? C1 EDO 4 A 1 HETATM 2 O O1 EDO . . . E 2 32.87 101.244 14.635 1 31.22 ? O1 EDO 4 A 1 HETATM 3 C C2 EDO . . . E 2 31.209 102.587 15.254 1 25.7 ? C2 EDO 4 A 1 HETATM 4 O O2 EDO . . . E 2 30.34 101.901 16.155 1 22.56 ? O2 EDO 4 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #