data_3LIF
#
_model_server_result.job_id            eyqn1I1_frA9QA9mcJKeqw 
_model_server_result.datetime_utc      '2024-12-25 17:36:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lif 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3LIF 
#
_exptl.entry_id    3LIF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LIF 
_cell.length_a            184.78 
_cell.length_b            184.78 
_cell.length_c            184.78 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LIF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        212 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 16 A GLU 55 1_555 A N MSE 17 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C MSE 17 A MSE 56 1_555 A N ARG 18 A ARG 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C PHE 45 A PHE 84 1_555 A N MSE 46 A MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale4 A C MSE 46 A MSE 85 1_555 A N LYS 47 A LYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale5 A C ASP 190 A ASP 229 1_555 A N MSE 191 A MSE 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale6 A C MSE 191 A MSE 230 1_555 A N ALA 192 A ALA 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale7 A C ASN 193 A ASN 232 1_555 A N MSE 194 A MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale8 A C MSE 194 A MSE 233 1_555 A N VAL 195 A VAL 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
covale ? covale9 B C GLU 16 B GLU 55 1_555 B N MSE 17 B MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale10 B C MSE 17 B MSE 56 1_555 B N ARG 18 B ARG 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale11 B C PHE 45 B PHE 84 1_555 B N MSE 46 B MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale12 B C MSE 46 B MSE 85 1_555 B N LYS 47 B LYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 B C ASP 190 B ASP 229 1_555 B N MSE 191 B MSE 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale14 B C MSE 191 B MSE 230 1_555 B N ALA 192 B ALA 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale15 B C ASN 193 B ASN 232 1_555 B N MSE 194 B MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale16 B C MSE 194 B MSE 233 1_555 B N VAL 195 B VAL 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 225 n n 
C1 H11 MPD sing 226 n n 
C1 H12 MPD sing 227 n n 
C1 H13 MPD sing 228 n n 
C2 O2 MPD sing 229 n n 
C2 CM MPD sing 230 n n 
C2 C3 MPD sing 231 n n 
O2 HO2 MPD sing 232 n n 
CM HM1 MPD sing 233 n n 
CM HM2 MPD sing 234 n n 
CM HM3 MPD sing 235 n n 
C3 C4 MPD sing 236 n n 
C3 H31 MPD sing 237 n n 
C3 H32 MPD sing 238 n n 
C4 O4 MPD sing 239 n n 
C4 C5 MPD sing 240 n n 
C4 H4 MPD sing 241 n n 
O4 HO4 MPD sing 242 n n 
C5 H51 MPD sing 243 n n 
C5 H52 MPD sing 244 n n 
C5 H53 MPD sing 245 n n 
#
_atom_sites.entry_id                     3LIF 
_atom_sites.fract_transf_matrix[1][1]    0.005412 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005412 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005412 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MPD A 1 1 1 MPD MPD . 
D 3 CIT A 1 294 1 CIT CIT . 
E 2 MPD B 1 2 2 MPD MPD . 
F 3 CIT B 1 294 2 CIT CIT . 
G 4 HOH A 1 2 2 HOH HOH . 
G 4 HOH A 2 3 3 HOH HOH . 
G 4 HOH A 3 4 4 HOH HOH . 
G 4 HOH A 4 6 6 HOH HOH . 
G 4 HOH A 5 7 7 HOH HOH . 
G 4 HOH A 6 10 10 HOH HOH . 
G 4 HOH A 7 11 11 HOH HOH . 
G 4 HOH A 8 17 17 HOH HOH . 
G 4 HOH A 9 19 19 HOH HOH . 
G 4 HOH A 10 20 20 HOH HOH . 
G 4 HOH A 11 21 21 HOH HOH . 
G 4 HOH A 12 24 24 HOH HOH . 
G 4 HOH A 13 28 28 HOH HOH . 
G 4 HOH A 14 29 29 HOH HOH . 
G 4 HOH A 15 30 30 HOH HOH . 
G 4 HOH A 16 33 33 HOH HOH . 
G 4 HOH A 17 34 34 HOH HOH . 
G 4 HOH A 18 35 35 HOH HOH . 
G 4 HOH A 19 37 37 HOH HOH . 
G 4 HOH A 20 295 1 HOH HOH . 
G 4 HOH A 21 296 40 HOH HOH . 
G 4 HOH A 22 297 41 HOH HOH . 
G 4 HOH A 23 298 42 HOH HOH . 
G 4 HOH A 24 299 43 HOH HOH . 
G 4 HOH A 25 300 44 HOH HOH . 
G 4 HOH A 26 301 48 HOH HOH . 
G 4 HOH A 27 302 49 HOH HOH . 
G 4 HOH A 28 303 52 HOH HOH . 
G 4 HOH A 29 304 53 HOH HOH . 
G 4 HOH A 30 305 54 HOH HOH . 
G 4 HOH A 31 306 55 HOH HOH . 
G 4 HOH A 32 307 57 HOH HOH . 
G 4 HOH A 33 308 58 HOH HOH . 
G 4 HOH A 34 309 59 HOH HOH . 
G 4 HOH A 35 310 61 HOH HOH . 
G 4 HOH A 36 311 62 HOH HOH . 
G 4 HOH A 37 312 64 HOH HOH . 
G 4 HOH A 38 313 65 HOH HOH . 
G 4 HOH A 39 314 66 HOH HOH . 
G 4 HOH A 40 315 67 HOH HOH . 
G 4 HOH A 41 316 68 HOH HOH . 
G 4 HOH A 42 317 69 HOH HOH . 
G 4 HOH A 43 318 70 HOH HOH . 
G 4 HOH A 44 319 71 HOH HOH . 
G 4 HOH A 45 320 72 HOH HOH . 
G 4 HOH A 46 321 73 HOH HOH . 
G 4 HOH A 47 322 74 HOH HOH . 
G 4 HOH A 48 323 75 HOH HOH . 
G 4 HOH A 49 324 76 HOH HOH . 
G 4 HOH A 50 325 83 HOH HOH . 
G 4 HOH A 51 326 84 HOH HOH . 
G 4 HOH A 52 327 85 HOH HOH . 
G 4 HOH A 53 328 86 HOH HOH . 
G 4 HOH A 54 329 87 HOH HOH . 
G 4 HOH A 55 330 90 HOH HOH . 
G 4 HOH A 56 331 91 HOH HOH . 
G 4 HOH A 57 332 93 HOH HOH . 
H 4 HOH B 1 5 5 HOH HOH . 
H 4 HOH B 2 8 8 HOH HOH . 
H 4 HOH B 3 9 9 HOH HOH . 
H 4 HOH B 4 12 12 HOH HOH . 
H 4 HOH B 5 13 13 HOH HOH . 
H 4 HOH B 6 14 14 HOH HOH . 
H 4 HOH B 7 15 15 HOH HOH . 
H 4 HOH B 8 16 16 HOH HOH . 
H 4 HOH B 9 18 18 HOH HOH . 
H 4 HOH B 10 22 22 HOH HOH . 
H 4 HOH B 11 23 23 HOH HOH . 
H 4 HOH B 12 25 25 HOH HOH . 
H 4 HOH B 13 26 26 HOH HOH . 
H 4 HOH B 14 27 27 HOH HOH . 
H 4 HOH B 15 31 31 HOH HOH . 
H 4 HOH B 16 32 32 HOH HOH . 
H 4 HOH B 17 36 36 HOH HOH . 
H 4 HOH B 18 38 38 HOH HOH . 
H 4 HOH B 19 39 39 HOH HOH . 
H 4 HOH B 20 295 45 HOH HOH . 
H 4 HOH B 21 296 46 HOH HOH . 
H 4 HOH B 22 297 47 HOH HOH . 
H 4 HOH B 23 298 50 HOH HOH . 
H 4 HOH B 24 299 51 HOH HOH . 
H 4 HOH B 25 300 56 HOH HOH . 
H 4 HOH B 26 301 60 HOH HOH . 
H 4 HOH B 27 302 63 HOH HOH . 
H 4 HOH B 28 303 77 HOH HOH . 
H 4 HOH B 29 304 78 HOH HOH . 
H 4 HOH B 30 305 79 HOH HOH . 
H 4 HOH B 31 306 80 HOH HOH . 
H 4 HOH B 32 307 81 HOH HOH . 
H 4 HOH B 33 308 82 HOH HOH . 
H 4 HOH B 34 309 88 HOH HOH . 
H 4 HOH B 35 310 89 HOH HOH . 
H 4 HOH B 36 311 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 2 31.102 -24.977 2.38 1 36.94 ? C1 MPD 1 A 1 
HETATM 2 C C2 MPD . . . C 2 29.591 -24.664 2.355 1 34.98 ? C2 MPD 1 A 1 
HETATM 3 O O2 MPD . . . C 2 29.452 -23.399 1.468 1 32.07 ? O2 MPD 1 A 1 
HETATM 4 C CM MPD . . . C 2 28.645 -24.557 3.545 1 27.04 ? CM MPD 1 A 1 
HETATM 5 C C3 MPD . . . C 2 29.386 -26.197 2.196 1 32.97 ? C3 MPD 1 A 1 
HETATM 6 C C4 MPD . . . C 2 29.052 -27.102 3.473 1 30.4 ? C4 MPD 1 A 1 
HETATM 7 O O4 MPD . . . C 2 29.371 -28.47 3.268 1 26.08 ? O4 MPD 1 A 1 
HETATM 8 C C5 MPD . . . C 2 29.585 -26.953 4.895 1 23.07 ? C5 MPD 1 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#