data_3LII # _model_server_result.job_id OgBPPy60Pwd6LxAAgdieZg _model_server_result.datetime_utc '2024-10-13 07:18:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1015}' # _entry.id 3LII # _exptl.entry_id 3LII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LII _cell.length_a 210.9 _cell.length_b 210.9 _cell.length_c 115.27 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LII _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1001 NAG 2 n C NAG 2 C 2 NAG C 1002 NAG 2 n D NAG 1 D 1 NAG C 1003 NAG 2 n D NAG 2 D 2 NAG C 1004 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 69 1_555 A SG CYS 93 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf2 A SG CYS 406 A CYS 409 1_555 A SG CYS 526 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf3 B SG CYS 66 B CYS 69 1_555 B SG CYS 93 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf4 B SG CYS 406 B CYS 409 1_555 B SG CYS 526 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? covale ? covale1 A ND2 ASN 347 A ASN 350 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 B ND2 ASN 347 B ASN 350 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? covale ? covale4 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 3LII _atom_sites.fract_transf_matrix[1][1] 0.004742 _atom_sites.fract_transf_matrix[1][2] 0.002738 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 1005 1005 SO4 SO4 . F 3 SO4 A 1 1010 1010 SO4 SO4 . G 3 SO4 A 1 1012 1012 SO4 SO4 . H 3 SO4 A 1 1011 1011 SO4 SO4 . I 3 SO4 A 1 1013 1013 SO4 SO4 . J 3 SO4 A 1 1017 1017 SO4 SO4 . K 3 SO4 B 1 1014 1014 SO4 SO4 . L 3 SO4 B 1 1015 1015 SO4 SO4 . M 3 SO4 B 1 1016 1016 SO4 SO4 . N 4 HOH A 1 601 601 HOH HOH . N 4 HOH A 2 602 602 HOH HOH . N 4 HOH A 3 603 603 HOH HOH . N 4 HOH A 4 604 604 HOH HOH . N 4 HOH A 5 605 605 HOH HOH . N 4 HOH A 6 606 606 HOH HOH . N 4 HOH A 7 607 607 HOH HOH . N 4 HOH A 8 608 608 HOH HOH . N 4 HOH A 9 609 609 HOH HOH . N 4 HOH A 10 610 610 HOH HOH . N 4 HOH A 11 611 611 HOH HOH . N 4 HOH A 12 612 612 HOH HOH . N 4 HOH A 13 613 613 HOH HOH . N 4 HOH A 14 614 614 HOH HOH . N 4 HOH A 15 617 617 HOH HOH . N 4 HOH A 16 624 624 HOH HOH . N 4 HOH A 17 625 625 HOH HOH . N 4 HOH A 18 626 626 HOH HOH . N 4 HOH A 19 627 627 HOH HOH . N 4 HOH A 20 628 628 HOH HOH . N 4 HOH A 21 629 629 HOH HOH . N 4 HOH A 22 630 630 HOH HOH . N 4 HOH A 23 632 632 HOH HOH . N 4 HOH A 24 633 633 HOH HOH . N 4 HOH A 25 634 634 HOH HOH . N 4 HOH A 26 638 638 HOH HOH . N 4 HOH A 27 640 640 HOH HOH . N 4 HOH A 28 642 642 HOH HOH . N 4 HOH A 29 643 643 HOH HOH . N 4 HOH A 30 644 644 HOH HOH . N 4 HOH A 31 646 646 HOH HOH . N 4 HOH A 32 648 648 HOH HOH . N 4 HOH A 33 650 650 HOH HOH . N 4 HOH A 34 653 653 HOH HOH . O 4 HOH B 1 615 615 HOH HOH . O 4 HOH B 2 616 616 HOH HOH . O 4 HOH B 3 618 618 HOH HOH . O 4 HOH B 4 619 619 HOH HOH . O 4 HOH B 5 620 620 HOH HOH . O 4 HOH B 6 621 621 HOH HOH . O 4 HOH B 7 622 622 HOH HOH . O 4 HOH B 8 623 623 HOH HOH . O 4 HOH B 9 631 631 HOH HOH . O 4 HOH B 10 635 635 HOH HOH . O 4 HOH B 11 636 636 HOH HOH . O 4 HOH B 12 637 637 HOH HOH . O 4 HOH B 13 639 639 HOH HOH . O 4 HOH B 14 641 641 HOH HOH . O 4 HOH B 15 645 645 HOH HOH . O 4 HOH B 16 647 647 HOH HOH . O 4 HOH B 17 649 649 HOH HOH . O 4 HOH B 18 651 651 HOH HOH . O 4 HOH B 19 652 652 HOH HOH . O 4 HOH B 20 654 654 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . L 3 70.966 52.559 9.713 1 107.91 ? S SO4 1015 B 1 HETATM 2 O O1 SO4 . . . L 3 69.777 53.201 9.148 1 108.41 ? O1 SO4 1015 B 1 HETATM 3 O O2 SO4 . . . L 3 72.107 52.838 8.842 1 107.03 ? O2 SO4 1015 B 1 HETATM 4 O O3 SO4 . . . L 3 71.24 53.081 11.064 1 108.34 ? O3 SO4 1015 B 1 HETATM 5 O O4 SO4 . . . L 3 70.698 51.124 9.773 1 107.78 ? O4 SO4 1015 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #