data_3LIQ # _model_server_result.job_id nvZOy7DvM2Qtzo5Pq30ZhA _model_server_result.datetime_utc '2025-03-02 06:41:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3liq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":117}' # _entry.id 3LIQ # _exptl.entry_id 3LIQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 639.848 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R)-3-[(2S,3S)-3-[[(2S)-2-[[(2S)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-butanoyl]amino]-2-hydroxy-4-phenyl-but anoyl]-5,5-dimethyl-N-(2-methylpropyl)-1,3-thiazolidine-4-carboxamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LIQ _cell.length_a 77.95 _cell.length_b 77.95 _cell.length_c 163.204 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LIQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H49 N5 O5 S' _chem_comp.formula_weight 639.848 _chem_comp.id E14 _chem_comp.mon_nstd_flag . _chem_comp.name '(4R)-3-[(2S,3S)-3-[[(2S)-2-[[(2S)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-butanoyl]amino]-2-hydroxy-4-phenyl-but anoyl]-5,5-dimethyl-N-(2-methylpropyl)-1,3-thiazolidine-4-carboxamide' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms KNI-10673 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBF OAK E14 doub 83 n n NAJ HNAJ E14 sing 84 n n NAJ HNAA E14 sing 85 n n CBM CBF E14 sing 86 n n CBM NAJ E14 sing 87 n n CBM CBK E14 sing 88 n n CBM HBM E14 sing 89 n n CBK CAX E14 sing 90 n y CAQ CAT E14 sing 91 n y CAQ HAQ E14 sing 92 n n CAT HAT E14 sing 93 n n CAU CAQ E14 doub 94 n y CAU HAU E14 sing 95 n n CAX CAT E14 doub 96 n y CAX HAX E14 sing 97 n n CAY CBK E14 doub 98 n y CAY CAU E14 sing 99 n y CAY HAY E14 sing 100 n n N CA E14 sing 101 n n N HN E14 sing 102 n n CA CB E14 sing 103 n n CA C E14 sing 104 n n CA HA E14 sing 105 n n CB CAG E14 sing 106 n n CB CG1 E14 sing 107 n n CB CG2 E14 sing 108 n n CAG HAG E14 sing 109 n n CAG HAGA E14 sing 110 n n CAG HAGB E14 sing 111 n n CG1 HG1 E14 sing 112 n n CG1 HG1A E14 sing 113 n n CG1 HG1B E14 sing 114 n n CG2 HG2 E14 sing 115 n n CG2 HG2A E14 sing 116 n n CG2 HG2B E14 sing 117 n n C O E14 doub 118 n n CBI CBN E14 sing 119 n n CBI OAN E14 doub 120 n n NBC CBO E14 sing 121 n n NBC HNBC E14 sing 122 n n CBN OAO E14 sing 123 n n CBN HBN E14 sing 124 n n CBJ CBA E14 sing 125 n n CBA HBA E14 sing 126 n n CBA HBAA E14 sing 127 n n CAP CAR E14 doub 128 n y CAP CAS E14 sing 129 n y CAP HAP E14 sing 130 n n CBO CBN E14 sing 131 n n CBO CBA E14 sing 132 n n CBO HBO E14 sing 133 n n OAO HOAO E14 sing 134 n n CAV CBJ E14 doub 135 n y CAV HAV E14 sing 136 n n CAW CBJ E14 sing 137 n y CAW HAW E14 sing 138 n n CAR CAV E14 sing 139 n y CAR HAR E14 sing 140 n n CAS CAW E14 doub 141 n y CAS HAS E14 sing 142 n n CBH CBQ E14 sing 143 n n OAM CBH E14 doub 144 n n CBQ NBR E14 sing 145 n n CBQ HBQ E14 sing 146 n n CBU CBQ E14 sing 147 n n CBU CAI E14 sing 148 n n CAZ NBR E14 sing 149 n n CAZ HAZ E14 sing 150 n n CAZ HAZA E14 sing 151 n n CAH CBU E14 sing 152 n n CAH HAH E14 sing 153 n n CAH HAHA E14 sing 154 n n CAH HAHB E14 sing 155 n n CAI HAI E14 sing 156 n n CAI HAIA E14 sing 157 n n CAI HAIB E14 sing 158 n n SBE CBU E14 sing 159 n n SBE CAZ E14 sing 160 n n CAB CBS E14 sing 161 n n CAB HAB E14 sing 162 n n CAB HABA E14 sing 163 n n CAB HABB E14 sing 164 n n CBS CAC E14 sing 165 n n CBS CBL E14 sing 166 n n CBS HBS E14 sing 167 n n CAC HAC E14 sing 168 n n CAC HACA E14 sing 169 n n CAC HACB E14 sing 170 n n CBL NBB E14 sing 171 n n CBL HBL E14 sing 172 n n CBL HBLA E14 sing 173 n n NBB HNBB E14 sing 174 n n CBF N E14 sing 175 n n C NBC E14 sing 176 n n CBI NBR E14 sing 177 n n CBH NBB E14 sing 178 n n # _atom_sites.entry_id 3LIQ _atom_sites.fract_transf_matrix[1][1] 0.012829 _atom_sites.fract_transf_matrix[1][2] 0.007407 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 E14 B 1 117 1 E14 DRG . D 3 HOH A 1 117 2 HOH HOH . D 3 HOH A 2 118 5 HOH HOH . D 3 HOH A 3 119 6 HOH HOH . D 3 HOH A 4 120 7 HOH HOH . D 3 HOH A 5 121 9 HOH HOH . D 3 HOH A 6 122 11 HOH HOH . D 3 HOH A 7 123 14 HOH HOH . D 3 HOH A 8 124 17 HOH HOH . D 3 HOH A 9 125 18 HOH HOH . D 3 HOH A 10 126 19 HOH HOH . D 3 HOH A 11 127 20 HOH HOH . D 3 HOH A 12 128 22 HOH HOH . D 3 HOH A 13 129 25 HOH HOH . D 3 HOH A 14 130 26 HOH HOH . D 3 HOH A 15 131 28 HOH HOH . D 3 HOH A 16 132 29 HOH HOH . D 3 HOH A 17 134 32 HOH HOH . D 3 HOH A 18 135 36 HOH HOH . D 3 HOH A 19 136 42 HOH HOH . D 3 HOH A 20 137 44 HOH HOH . D 3 HOH A 21 138 45 HOH HOH . D 3 HOH A 22 139 46 HOH HOH . D 3 HOH A 23 140 48 HOH HOH . D 3 HOH A 24 141 50 HOH HOH . D 3 HOH A 25 142 52 HOH HOH . D 3 HOH A 26 143 55 HOH HOH . D 3 HOH A 27 144 56 HOH HOH . D 3 HOH A 28 145 57 HOH HOH . D 3 HOH A 29 146 58 HOH HOH . D 3 HOH A 30 147 59 HOH HOH . D 3 HOH A 31 148 63 HOH HOH . D 3 HOH A 32 149 64 HOH HOH . D 3 HOH A 33 150 65 HOH HOH . D 3 HOH A 34 151 66 HOH HOH . D 3 HOH A 35 152 67 HOH HOH . D 3 HOH A 36 153 68 HOH HOH . D 3 HOH A 37 154 69 HOH HOH . D 3 HOH A 38 155 70 HOH HOH . D 3 HOH A 39 156 71 HOH HOH . D 3 HOH A 40 157 72 HOH HOH . D 3 HOH A 41 158 74 HOH HOH . D 3 HOH A 42 159 76 HOH HOH . D 3 HOH A 43 160 78 HOH HOH . D 3 HOH A 44 161 79 HOH HOH . E 3 HOH B 1 118 1 HOH HOH . E 3 HOH B 2 119 3 HOH HOH . E 3 HOH B 3 120 4 HOH HOH . E 3 HOH B 4 121 8 HOH HOH . E 3 HOH B 5 122 10 HOH HOH . E 3 HOH B 6 123 12 HOH HOH . E 3 HOH B 7 124 13 HOH HOH . E 3 HOH B 8 125 15 HOH HOH . E 3 HOH B 9 126 16 HOH HOH . E 3 HOH B 10 127 21 HOH HOH . E 3 HOH B 11 128 23 HOH HOH . E 3 HOH B 12 129 24 HOH HOH . E 3 HOH B 13 130 27 HOH HOH . E 3 HOH B 14 131 30 HOH HOH . E 3 HOH B 15 132 33 HOH HOH . E 3 HOH B 16 133 31 HOH HOH . E 3 HOH B 17 134 35 HOH HOH . E 3 HOH B 18 135 37 HOH HOH . E 3 HOH B 19 136 38 HOH HOH . E 3 HOH B 20 137 39 HOH HOH . E 3 HOH B 21 138 40 HOH HOH . E 3 HOH B 22 139 41 HOH HOH . E 3 HOH B 23 140 43 HOH HOH . E 3 HOH B 24 141 47 HOH HOH . E 3 HOH B 25 142 49 HOH HOH . E 3 HOH B 26 143 51 HOH HOH . E 3 HOH B 27 144 53 HOH HOH . E 3 HOH B 28 145 54 HOH HOH . E 3 HOH B 29 146 60 HOH HOH . E 3 HOH B 30 147 61 HOH HOH . E 3 HOH B 31 148 62 HOH HOH . E 3 HOH B 32 149 73 HOH HOH . E 3 HOH B 33 150 75 HOH HOH . E 3 HOH B 34 151 77 HOH HOH . E 3 HOH B 35 152 80 HOH HOH . E 3 HOH B 36 153 81 HOH HOH . E 3 HOH B 37 154 82 HOH HOH . E 3 HOH B 38 155 83 HOH HOH . E 3 HOH B 39 156 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBF E14 . . . C 2 23.511 29.476 26.411 1 38.84 ? CBF E14 117 B 1 HETATM 2 N NAJ E14 . . . C 2 25.49 28.187 27.327 1 42.45 ? NAJ E14 117 B 1 HETATM 3 O OAK E14 . . . C 2 23.647 29.206 25.249 1 32.35 ? OAK E14 117 B 1 HETATM 4 C CBM E14 . . . C 2 24.677 29.413 27.436 1 40.92 ? CBM E14 117 B 1 HETATM 5 C CBK E14 . . . C 2 25.608 30.627 27.207 1 44.51 ? CBK E14 117 B 1 HETATM 6 C CAQ E14 . . . C 2 27.467 33.067 26.773 1 50.17 ? CAQ E14 117 B 1 HETATM 7 C CAT E14 . . . C 2 27.277 32.465 28.192 1 49.87 ? CAT E14 117 B 1 HETATM 8 C CAU E14 . . . C 2 26.722 32.452 25.561 1 48.22 ? CAU E14 117 B 1 HETATM 9 C CAX E14 . . . C 2 26.354 31.243 28.412 1 47.66 ? CAX E14 117 B 1 HETATM 10 C CAY E14 . . . C 2 25.798 31.239 25.786 1 46.65 ? CAY E14 117 B 1 HETATM 11 N N E14 . . . C 2 22.211 29.885 26.934 1 36.58 ? N E14 117 B 1 HETATM 12 C CA E14 . . . C 2 21.089 30.007 26.011 1 30.75 ? CA E14 117 B 1 HETATM 13 C CB E14 . . . C 2 20.051 28.856 26.18 1 31.43 ? CB E14 117 B 1 HETATM 14 C CAG E14 . . . C 2 20.692 27.551 25.641 1 26.28 ? CAG E14 117 B 1 HETATM 15 C CG1 E14 . . . C 2 19.64 28.698 27.665 1 29.95 ? CG1 E14 117 B 1 HETATM 16 C CG2 E14 . . . C 2 18.782 29.174 25.332 1 29.66 ? CG2 E14 117 B 1 HETATM 17 C C E14 . . . C 2 20.518 31.426 26.032 1 29.89 ? C E14 117 B 1 HETATM 18 O O E14 . . . C 2 19.9 31.875 26.95 1 29.62 ? O E14 117 B 1 HETATM 19 C CBI E14 . . . C 2 18.241 34.464 23.649 1 31.93 ? CBI E14 117 B 1 HETATM 20 N NBC E14 . . . C 2 20.804 32.178 24.833 1 30.75 ? NBC E14 117 B 1 HETATM 21 O OAN E14 . . . C 2 18.411 35.537 23.219 1 33.53 ? OAN E14 117 B 1 HETATM 22 C CBN E14 . . . C 2 19.281 33.368 23.513 1 31.23 ? CBN E14 117 B 1 HETATM 23 C CBJ E14 . . . C 2 22.116 34.639 25.857 1 33.42 ? CBJ E14 117 B 1 HETATM 24 C CBA E14 . . . C 2 21.432 34.508 24.49 1 33.23 ? CBA E14 117 B 1 HETATM 25 C CAP E14 . . . C 2 23.486 34.911 28.577 1 42.48 ? CAP E14 117 B 1 HETATM 26 C CBO E14 . . . C 2 20.283 33.516 24.683 1 31.45 ? CBO E14 117 B 1 HETATM 27 O OAO E14 . . . C 2 19.836 33.457 22.247 1 33.89 ? OAO E14 117 B 1 HETATM 28 C CAV E14 . . . C 2 21.817 35.857 26.73 1 35.88 ? CAV E14 117 B 1 HETATM 29 C CAW E14 . . . C 2 23.096 33.561 26.328 1 36.91 ? CAW E14 117 B 1 HETATM 30 C CAR E14 . . . C 2 22.501 36.005 28.098 1 40.99 ? CAR E14 117 B 1 HETATM 31 C CAS E14 . . . C 2 23.782 33.674 27.698 1 39.93 ? CAS E14 117 B 1 HETATM 32 C CBH E14 . . . C 2 16.472 36.312 25.487 1 34.79 ? CBH E14 117 B 1 HETATM 33 N NBR E14 . . . C 2 17.018 34.139 24.333 1 33.09 ? NBR E14 117 B 1 HETATM 34 O OAM E14 . . . C 2 17.266 36.011 26.326 1 32.03 ? OAM E14 117 B 1 HETATM 35 C CBQ E14 . . . C 2 15.893 35.219 24.533 1 34.16 ? CBQ E14 117 B 1 HETATM 36 C CBU E14 . . . C 2 14.667 34.379 25.066 1 35.03 ? CBU E14 117 B 1 HETATM 37 C CAZ E14 . . . C 2 16.686 32.759 24.941 1 34.04 ? CAZ E14 117 B 1 HETATM 38 C CAH E14 . . . C 2 13.743 35.194 25.991 1 35.52 ? CAH E14 117 B 1 HETATM 39 C CAI E14 . . . C 2 13.884 33.892 23.836 1 33.95 ? CAI E14 117 B 1 HETATM 40 S SBE E14 . . . C 2 15.346 32.966 25.936 1 37.34 ? SBE E14 117 B 1 HETATM 41 C CAB E14 . . . C 2 18.734 39.899 27.088 1 38.19 ? CAB E14 117 B 1 HETATM 42 C CBS E14 . . . C 2 17.901 39.454 25.864 1 33.72 ? CBS E14 117 B 1 HETATM 43 C CAC E14 . . . C 2 18.839 38.546 25.051 1 34.48 ? CAC E14 117 B 1 HETATM 44 C CBL E14 . . . C 2 16.643 38.68 26.376 1 35.77 ? CBL E14 117 B 1 HETATM 45 N NBB E14 . . . C 2 16.056 37.72 25.41 1 33.57 ? NBB E14 117 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 45 #