data_3LIR # _model_server_result.job_id H7ZwwQIcoyX1XgHkLILItg _model_server_result.datetime_utc '2024-11-26 11:13:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":266}' # _entry.id 3LIR # _exptl.entry_id 3LIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LIR _cell.length_a 68.997 _cell.length_b 63.171 _cell.length_c 37.573 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O GLY . A GLY 2 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 H OXT GLY . A GLY 2 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc3 I O HOH . A HOH 17 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc4 I O HOH . A HOH 24 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc5 I O HOH . A HOH 25 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc6 I O HOH . A HOH 36 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc7 A OD2 ASP 20 A ASP 124 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc8 A OD1 ASP 20 A ASP 124 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc9 A O ASP 54 A ASP 158 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc10 A NE2 HIS 64 A HIS 168 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc11 A OD1 ASP 66 A ASP 170 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc12 A OD2 ASP 71 A ASP 175 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 A O GLY 72 A GLY 176 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc14 A O GLY 74 A GLY 178 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc15 A O ILE 76 A ILE 180 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc16 A NE2 HIS 79 A HIS 183 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc17 A O GLY 86 A GLY 190 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc18 A O GLY 88 A GLY 192 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc19 A OD2 ASP 90 A ASP 194 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc20 A ND1 HIS 92 A HIS 196 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc21 A OD1 ASP 94 A ASP 198 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc22 A O GLU 95 A GLU 199 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc23 A OE2 GLU 95 A GLU 199 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc24 A O GLU 97 A GLU 201 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc25 A OE2 GLU 97 A GLU 201 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc26 A NE2 HIS 114 A HIS 218 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc27 A NE2 HIS 118 A HIS 222 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc28 A NE2 HIS 124 A HIS 228 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LIR _atom_sites.fract_transf_matrix[1][1] 0.014493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 264 264 ZN ZN . C 2 ZN A 1 265 265 ZN ZN . D 3 CA A 1 266 266 CA CA . E 3 CA A 1 267 267 CA CA . F 3 CA A 1 268 268 CA CA . G 4 EEC A 1 1 1 EEC EEC . H 5 GLY A 1 2 2 GLY GLY . I 6 HOH A 1 3 3 HOH HOH . I 6 HOH A 2 4 4 HOH HOH . I 6 HOH A 3 5 5 HOH HOH . I 6 HOH A 4 6 6 HOH HOH . I 6 HOH A 5 7 7 HOH HOH . I 6 HOH A 6 8 8 HOH HOH . I 6 HOH A 7 9 9 HOH HOH . I 6 HOH A 8 10 10 HOH HOH . I 6 HOH A 9 11 11 HOH HOH . I 6 HOH A 10 12 12 HOH HOH . I 6 HOH A 11 13 13 HOH HOH . I 6 HOH A 12 14 14 HOH HOH . I 6 HOH A 13 15 15 HOH HOH . I 6 HOH A 14 16 16 HOH HOH . I 6 HOH A 15 17 17 HOH HOH . I 6 HOH A 16 18 18 HOH HOH . I 6 HOH A 17 19 19 HOH HOH . I 6 HOH A 18 20 20 HOH HOH . I 6 HOH A 19 21 21 HOH HOH . I 6 HOH A 20 22 22 HOH HOH . I 6 HOH A 21 23 23 HOH HOH . I 6 HOH A 22 24 24 HOH HOH . I 6 HOH A 23 25 25 HOH HOH . I 6 HOH A 24 26 26 HOH HOH . I 6 HOH A 25 27 27 HOH HOH . I 6 HOH A 26 28 28 HOH HOH . I 6 HOH A 27 29 29 HOH HOH . I 6 HOH A 28 30 30 HOH HOH . I 6 HOH A 29 31 31 HOH HOH . I 6 HOH A 30 32 32 HOH HOH . I 6 HOH A 31 33 33 HOH HOH . I 6 HOH A 32 34 34 HOH HOH . I 6 HOH A 33 35 35 HOH HOH . I 6 HOH A 34 36 36 HOH HOH . I 6 HOH A 35 37 37 HOH HOH . I 6 HOH A 36 38 38 HOH HOH . I 6 HOH A 37 39 39 HOH HOH . I 6 HOH A 38 40 40 HOH HOH . I 6 HOH A 39 41 41 HOH HOH . I 6 HOH A 40 42 42 HOH HOH . I 6 HOH A 41 43 43 HOH HOH . I 6 HOH A 42 44 44 HOH HOH . I 6 HOH A 43 45 45 HOH HOH . I 6 HOH A 44 46 46 HOH HOH . I 6 HOH A 45 47 47 HOH HOH . I 6 HOH A 46 48 48 HOH HOH . I 6 HOH A 47 49 49 HOH HOH . I 6 HOH A 48 50 50 HOH HOH . I 6 HOH A 49 51 51 HOH HOH . I 6 HOH A 50 52 52 HOH HOH . I 6 HOH A 51 53 53 HOH HOH . I 6 HOH A 52 54 54 HOH HOH . I 6 HOH A 53 55 55 HOH HOH . I 6 HOH A 54 56 56 HOH HOH . I 6 HOH A 55 57 57 HOH HOH . I 6 HOH A 56 58 58 HOH HOH . I 6 HOH A 57 59 59 HOH HOH . I 6 HOH A 58 60 60 HOH HOH . I 6 HOH A 59 61 61 HOH HOH . I 6 HOH A 60 62 62 HOH HOH . I 6 HOH A 61 63 63 HOH HOH . I 6 HOH A 62 64 64 HOH HOH . I 6 HOH A 63 65 65 HOH HOH . I 6 HOH A 64 66 66 HOH HOH . I 6 HOH A 65 67 67 HOH HOH . I 6 HOH A 66 68 68 HOH HOH . I 6 HOH A 67 69 69 HOH HOH . I 6 HOH A 68 70 70 HOH HOH . I 6 HOH A 69 71 71 HOH HOH . I 6 HOH A 70 72 72 HOH HOH . I 6 HOH A 71 73 73 HOH HOH . I 6 HOH A 72 74 74 HOH HOH . I 6 HOH A 73 75 75 HOH HOH . I 6 HOH A 74 76 76 HOH HOH . I 6 HOH A 75 77 77 HOH HOH . I 6 HOH A 76 78 78 HOH HOH . I 6 HOH A 77 79 79 HOH HOH . I 6 HOH A 78 80 80 HOH HOH . I 6 HOH A 79 81 81 HOH HOH . I 6 HOH A 80 82 82 HOH HOH . I 6 HOH A 81 83 83 HOH HOH . I 6 HOH A 82 84 84 HOH HOH . I 6 HOH A 83 85 85 HOH HOH . I 6 HOH A 84 86 86 HOH HOH . I 6 HOH A 85 87 87 HOH HOH . I 6 HOH A 86 88 88 HOH HOH . I 6 HOH A 87 89 89 HOH HOH . I 6 HOH A 88 90 90 HOH HOH . I 6 HOH A 89 91 91 HOH HOH . I 6 HOH A 90 92 92 HOH HOH . I 6 HOH A 91 93 93 HOH HOH . I 6 HOH A 92 94 94 HOH HOH . I 6 HOH A 93 95 95 HOH HOH . I 6 HOH A 94 96 96 HOH HOH . I 6 HOH A 95 97 97 HOH HOH . I 6 HOH A 96 98 98 HOH HOH . I 6 HOH A 97 99 99 HOH HOH . I 6 HOH A 98 100 100 HOH HOH . I 6 HOH A 99 101 101 HOH HOH . I 6 HOH A 100 102 102 HOH HOH . I 6 HOH A 101 103 103 HOH HOH . I 6 HOH A 102 104 104 HOH HOH . I 6 HOH A 103 269 1 HOH HOH . I 6 HOH A 104 270 2 HOH HOH . I 6 HOH A 105 271 105 HOH HOH . I 6 HOH A 106 272 106 HOH HOH . I 6 HOH A 107 273 107 HOH HOH . I 6 HOH A 108 274 108 HOH HOH . I 6 HOH A 109 275 109 HOH HOH . I 6 HOH A 110 276 110 HOH HOH . I 6 HOH A 111 277 111 HOH HOH . I 6 HOH A 112 278 112 HOH HOH . I 6 HOH A 113 279 113 HOH HOH . I 6 HOH A 114 280 114 HOH HOH . I 6 HOH A 115 281 115 HOH HOH . I 6 HOH A 116 282 116 HOH HOH . I 6 HOH A 117 283 117 HOH HOH . I 6 HOH A 118 284 118 HOH HOH . I 6 HOH A 119 285 119 HOH HOH . I 6 HOH A 120 286 120 HOH HOH . I 6 HOH A 121 287 121 HOH HOH . I 6 HOH A 122 288 122 HOH HOH . I 6 HOH A 123 289 123 HOH HOH . I 6 HOH A 124 290 124 HOH HOH . I 6 HOH A 125 291 125 HOH HOH . I 6 HOH A 126 292 126 HOH HOH . I 6 HOH A 127 293 127 HOH HOH . I 6 HOH A 128 294 128 HOH HOH . I 6 HOH A 129 295 129 HOH HOH . I 6 HOH A 130 296 130 HOH HOH . I 6 HOH A 131 297 131 HOH HOH . I 6 HOH A 132 298 132 HOH HOH . I 6 HOH A 133 299 133 HOH HOH . I 6 HOH A 134 300 134 HOH HOH . I 6 HOH A 135 301 135 HOH HOH . I 6 HOH A 136 302 136 HOH HOH . I 6 HOH A 137 303 137 HOH HOH . I 6 HOH A 138 304 138 HOH HOH . I 6 HOH A 139 305 139 HOH HOH . I 6 HOH A 140 306 140 HOH HOH . I 6 HOH A 141 307 141 HOH HOH . I 6 HOH A 142 308 142 HOH HOH . I 6 HOH A 143 309 143 HOH HOH . I 6 HOH A 144 310 144 HOH HOH . I 6 HOH A 145 311 145 HOH HOH . I 6 HOH A 146 312 146 HOH HOH . I 6 HOH A 147 313 147 HOH HOH . I 6 HOH A 148 314 148 HOH HOH . I 6 HOH A 149 315 149 HOH HOH . I 6 HOH A 150 316 150 HOH HOH . I 6 HOH A 151 317 151 HOH HOH . I 6 HOH A 152 318 152 HOH HOH . I 6 HOH A 153 319 153 HOH HOH . I 6 HOH A 154 320 154 HOH HOH . I 6 HOH A 155 321 155 HOH HOH . I 6 HOH A 156 322 156 HOH HOH . I 6 HOH A 157 323 157 HOH HOH . I 6 HOH A 158 324 158 HOH HOH . I 6 HOH A 159 325 159 HOH HOH . I 6 HOH A 160 326 160 HOH HOH . I 6 HOH A 161 327 161 HOH HOH . I 6 HOH A 162 328 162 HOH HOH . I 6 HOH A 163 329 163 HOH HOH . I 6 HOH A 164 330 164 HOH HOH . I 6 HOH A 165 331 165 HOH HOH . I 6 HOH A 166 332 166 HOH HOH . I 6 HOH A 167 333 167 HOH HOH . I 6 HOH A 168 334 168 HOH HOH . I 6 HOH A 169 335 169 HOH HOH . I 6 HOH A 170 336 170 HOH HOH . I 6 HOH A 171 337 171 HOH HOH . I 6 HOH A 172 338 172 HOH HOH . I 6 HOH A 173 339 173 HOH HOH . I 6 HOH A 174 340 174 HOH HOH . I 6 HOH A 175 341 175 HOH HOH . I 6 HOH A 176 342 176 HOH HOH . I 6 HOH A 177 343 177 HOH HOH . I 6 HOH A 178 344 178 HOH HOH . I 6 HOH A 179 345 179 HOH HOH . I 6 HOH A 180 346 180 HOH HOH . I 6 HOH A 181 347 181 HOH HOH . I 6 HOH A 182 348 182 HOH HOH . I 6 HOH A 183 349 183 HOH HOH . I 6 HOH A 184 350 184 HOH HOH . I 6 HOH A 185 351 185 HOH HOH . I 6 HOH A 186 352 186 HOH HOH . I 6 HOH A 187 353 187 HOH HOH . I 6 HOH A 188 354 188 HOH HOH . I 6 HOH A 189 355 189 HOH HOH . I 6 HOH A 190 356 190 HOH HOH . I 6 HOH A 191 357 191 HOH HOH . I 6 HOH A 192 358 192 HOH HOH . I 6 HOH A 193 359 193 HOH HOH . I 6 HOH A 194 360 194 HOH HOH . I 6 HOH A 195 361 195 HOH HOH . I 6 HOH A 196 362 196 HOH HOH . I 6 HOH A 197 363 197 HOH HOH . I 6 HOH A 198 364 198 HOH HOH . I 6 HOH A 199 365 199 HOH HOH . I 6 HOH A 200 366 200 HOH HOH . I 6 HOH A 201 367 201 HOH HOH . I 6 HOH A 202 368 202 HOH HOH . I 6 HOH A 203 369 203 HOH HOH . I 6 HOH A 204 370 204 HOH HOH . I 6 HOH A 205 371 205 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.376 _atom_site.Cartn_y 11.305 _atom_site.Cartn_z -6.195 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 266 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #