data_3LIT # _model_server_result.job_id iB_YwhJuLmlVdc0jVnIHoA _model_server_result.datetime_utc '2025-06-26 10:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":117}' # _entry.id 3LIT # _exptl.entry_id 3LIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 653.875 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R)-3-[(2S,3S)-3-[[(2S)-2-[[(2S)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-butanoyl]amino]-2-hydroxy-4-phenyl-but anoyl]-5,5-dimethyl-N-[(2R)-3-methylbutan-2-yl]-1,3-thiazolidine-4-carboxamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LIT _cell.length_a 78.282 _cell.length_b 78.282 _cell.length_c 163.321 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H51 N5 O5 S' _chem_comp.formula_weight 653.875 _chem_comp.id E15 _chem_comp.mon_nstd_flag . _chem_comp.name '(4R)-3-[(2S,3S)-3-[[(2S)-2-[[(2S)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-butanoyl]amino]-2-hydroxy-4-phenyl-but anoyl]-5,5-dimethyl-N-[(2R)-3-methylbutan-2-yl]-1,3-thiazolidine-4-carboxamide' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms KNI-10681 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBF OAK E15 doub 83 n n NAJ HNAJ E15 sing 84 n n NAJ HNAA E15 sing 85 n n CBM CBF E15 sing 86 n n CBM NAJ E15 sing 87 n n CBM CBK E15 sing 88 n n CBM HBM E15 sing 89 n n CBK CAX E15 sing 90 n y CAQ CAT E15 sing 91 n y CAQ HAQ E15 sing 92 n n CAT HAT E15 sing 93 n n CAU CAQ E15 doub 94 n y CAU HAU E15 sing 95 n n CAX CAT E15 doub 96 n y CAX HAX E15 sing 97 n n CAY CBK E15 doub 98 n y CAY CAU E15 sing 99 n y CAY HAY E15 sing 100 n n N CA E15 sing 101 n n N HN E15 sing 102 n n CA CB E15 sing 103 n n CA C E15 sing 104 n n CA HA E15 sing 105 n n CB CAG E15 sing 106 n n CB CG1 E15 sing 107 n n CB CG2 E15 sing 108 n n CAG HAG E15 sing 109 n n CAG HAGA E15 sing 110 n n CAG HAGB E15 sing 111 n n CG1 HG1 E15 sing 112 n n CG1 HG1A E15 sing 113 n n CG1 HG1B E15 sing 114 n n CG2 HG2 E15 sing 115 n n CG2 HG2A E15 sing 116 n n CG2 HG2B E15 sing 117 n n C O E15 doub 118 n n CBI CBN E15 sing 119 n n CBI OAN E15 doub 120 n n NBC CBO E15 sing 121 n n NBC HNBC E15 sing 122 n n CBN OAO E15 sing 123 n n CBN HBN E15 sing 124 n n CBJ CBA E15 sing 125 n n CBA HBA E15 sing 126 n n CBA HBAA E15 sing 127 n n CAP CAR E15 doub 128 n y CAP CAS E15 sing 129 n y CAP HAP E15 sing 130 n n CBO CBN E15 sing 131 n n CBO CBA E15 sing 132 n n CBO HBO E15 sing 133 n n OAO HOAO E15 sing 134 n n CAV CBJ E15 doub 135 n y CAV HAV E15 sing 136 n n CAW CBJ E15 sing 137 n y CAW HAW E15 sing 138 n n CAR CAV E15 sing 139 n y CAR HAR E15 sing 140 n n CAS CAW E15 doub 141 n y CAS HAS E15 sing 142 n n CBH CBQ E15 sing 143 n n OAM CBH E15 doub 144 n n CBQ NBR E15 sing 145 n n CBQ HBQ E15 sing 146 n n CBU CBQ E15 sing 147 n n CBU CAI E15 sing 148 n n CAZ NBR E15 sing 149 n n CAZ HAZ E15 sing 150 n n CAZ HAZA E15 sing 151 n n CAH CBU E15 sing 152 n n CAH HAH E15 sing 153 n n CAH HAHA E15 sing 154 n n CAH HAHB E15 sing 155 n n CAI HAI E15 sing 156 n n CAI HAIA E15 sing 157 n n CAI HAIB E15 sing 158 n n SBE CBU E15 sing 159 n n SBE CAZ E15 sing 160 n n NBB CBL E15 sing 161 n n NBB HNBB E15 sing 162 n n CBL CBS E15 sing 163 n n CBL CAA E15 sing 164 n n CBL HBL E15 sing 165 n n CBS CAB E15 sing 166 n n CBS CAC E15 sing 167 n n CBS HBS E15 sing 168 n n CAB HAB E15 sing 169 n n CAB HABA E15 sing 170 n n CAB HABB E15 sing 171 n n CAC HAC E15 sing 172 n n CAC HACA E15 sing 173 n n CAC HACB E15 sing 174 n n CAA HAA E15 sing 175 n n CAA HAAA E15 sing 176 n n CAA HAAB E15 sing 177 n n CBF N E15 sing 178 n n C NBC E15 sing 179 n n CBI NBR E15 sing 180 n n CBH NBB E15 sing 181 n n # _atom_sites.entry_id 3LIT _atom_sites.fract_transf_matrix[1][1] 0.012774 _atom_sites.fract_transf_matrix[1][2] 0.007375 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 E15 A 1 117 1 E15 DRG . D 3 HOH A 1 118 2 HOH HOH . D 3 HOH A 2 119 4 HOH HOH . D 3 HOH A 3 120 5 HOH HOH . D 3 HOH A 4 121 7 HOH HOH . D 3 HOH A 5 122 9 HOH HOH . D 3 HOH A 6 123 11 HOH HOH . D 3 HOH A 7 124 13 HOH HOH . D 3 HOH A 8 125 14 HOH HOH . D 3 HOH A 9 126 16 HOH HOH . D 3 HOH A 10 127 17 HOH HOH . D 3 HOH A 11 128 19 HOH HOH . D 3 HOH A 12 129 20 HOH HOH . D 3 HOH A 13 130 21 HOH HOH . D 3 HOH A 14 131 22 HOH HOH . D 3 HOH A 15 133 26 HOH HOH . D 3 HOH A 16 134 27 HOH HOH . D 3 HOH A 17 135 28 HOH HOH . D 3 HOH A 18 136 29 HOH HOH . D 3 HOH A 19 137 31 HOH HOH . D 3 HOH A 20 138 32 HOH HOH . D 3 HOH A 21 139 33 HOH HOH . D 3 HOH A 22 140 36 HOH HOH . D 3 HOH A 23 141 37 HOH HOH . D 3 HOH A 24 142 38 HOH HOH . D 3 HOH A 25 143 39 HOH HOH . D 3 HOH A 26 144 41 HOH HOH . D 3 HOH A 27 145 42 HOH HOH . D 3 HOH A 28 146 43 HOH HOH . D 3 HOH A 29 147 45 HOH HOH . D 3 HOH A 30 148 47 HOH HOH . D 3 HOH A 31 149 48 HOH HOH . D 3 HOH A 32 150 54 HOH HOH . D 3 HOH A 33 151 56 HOH HOH . D 3 HOH A 34 152 57 HOH HOH . D 3 HOH A 35 153 61 HOH HOH . D 3 HOH A 36 154 62 HOH HOH . D 3 HOH A 37 155 64 HOH HOH . E 3 HOH B 1 117 1 HOH HOH . E 3 HOH B 2 118 3 HOH HOH . E 3 HOH B 3 119 6 HOH HOH . E 3 HOH B 4 120 8 HOH HOH . E 3 HOH B 5 121 10 HOH HOH . E 3 HOH B 6 122 12 HOH HOH . E 3 HOH B 7 123 15 HOH HOH . E 3 HOH B 8 124 18 HOH HOH . E 3 HOH B 9 125 24 HOH HOH . E 3 HOH B 10 126 25 HOH HOH . E 3 HOH B 11 127 30 HOH HOH . E 3 HOH B 12 128 34 HOH HOH . E 3 HOH B 13 129 35 HOH HOH . E 3 HOH B 14 130 40 HOH HOH . E 3 HOH B 15 131 44 HOH HOH . E 3 HOH B 16 132 23 HOH HOH . E 3 HOH B 17 133 49 HOH HOH . E 3 HOH B 18 134 50 HOH HOH . E 3 HOH B 19 135 51 HOH HOH . E 3 HOH B 20 136 52 HOH HOH . E 3 HOH B 21 137 53 HOH HOH . E 3 HOH B 22 138 55 HOH HOH . E 3 HOH B 23 139 58 HOH HOH . E 3 HOH B 24 140 59 HOH HOH . E 3 HOH B 25 141 60 HOH HOH . E 3 HOH B 26 142 63 HOH HOH . E 3 HOH B 27 143 65 HOH HOH . E 3 HOH B 28 144 66 HOH HOH . E 3 HOH B 29 145 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBF E15 . . . C 2 23.619 29.68 26.325 1 44.9 ? CBF E15 117 A 1 HETATM 2 N NAJ E15 . . . C 2 25.617 28.413 27.138 1 43.24 ? NAJ E15 117 A 1 HETATM 3 O OAK E15 . . . C 2 23.777 29.431 25.154 1 33.18 ? OAK E15 117 A 1 HETATM 4 C CBM E15 . . . C 2 24.784 29.608 27.34 1 42.17 ? CBM E15 117 A 1 HETATM 5 C CBK E15 . . . C 2 25.688 30.85 27.145 1 51.49 ? CBK E15 117 A 1 HETATM 6 C CAQ E15 . . . C 2 27.474 33.34 26.766 1 51.89 ? CAQ E15 117 A 1 HETATM 7 C CAT E15 . . . C 2 27.206 32.775 28.183 1 50.19 ? CAT E15 117 A 1 HETATM 8 C CAU E15 . . . C 2 26.86 32.665 25.522 1 47.47 ? CAU E15 117 A 1 HETATM 9 C CAX E15 . . . C 2 26.314 31.533 28.379 1 45.19 ? CAX E15 117 A 1 HETATM 10 C CAY E15 . . . C 2 25.967 31.423 25.723 1 53.13 ? CAY E15 117 A 1 HETATM 11 N N E15 . . . C 2 22.319 30.066 26.875 1 41.05 ? N E15 117 A 1 HETATM 12 C CA E15 . . . C 2 21.152 30.192 26.001 1 35.75 ? CA E15 117 A 1 HETATM 13 C CB E15 . . . C 2 20.175 28.964 26.173 1 32.74 ? CB E15 117 A 1 HETATM 14 C CAG E15 . . . C 2 20.857 27.654 25.681 1 25.45 ? CAG E15 117 A 1 HETATM 15 C CG1 E15 . . . C 2 19.736 28.785 27.646 1 41.7 ? CG1 E15 117 A 1 HETATM 16 C CG2 E15 . . . C 2 18.909 29.22 25.31 1 31.65 ? CG2 E15 117 A 1 HETATM 17 C C E15 . . . C 2 20.53 31.606 26.043 1 35.55 ? C E15 117 A 1 HETATM 18 O O E15 . . . C 2 19.892 32.012 26.971 1 40.16 ? O E15 117 A 1 HETATM 19 C CBI E15 . . . C 2 18.266 34.695 23.576 1 32.93 ? CBI E15 117 A 1 HETATM 20 N NBC E15 . . . C 2 20.775 32.395 24.85 1 38.79 ? NBC E15 117 A 1 HETATM 21 O OAN E15 . . . C 2 18.406 35.783 23.158 1 40.72 ? OAN E15 117 A 1 HETATM 22 C CBN E15 . . . C 2 19.344 33.632 23.414 1 35.35 ? CBN E15 117 A 1 HETATM 23 C CBJ E15 . . . C 2 22.094 34.982 25.844 1 32.07 ? CBJ E15 117 A 1 HETATM 24 C CBA E15 . . . C 2 21.368 34.8 24.497 1 30.53 ? CBA E15 117 A 1 HETATM 25 C CAP E15 . . . C 2 23.565 35.349 28.481 1 48.85 ? CAP E15 117 A 1 HETATM 26 C CBO E15 . . . C 2 20.261 33.751 24.655 1 28.52 ? CBO E15 117 A 1 HETATM 27 O OAO E15 . . . C 2 19.997 33.731 22.201 1 37.61 ? OAO E15 117 A 1 HETATM 28 C CAV E15 . . . C 2 21.753 36.197 26.727 1 38.76 ? CAV E15 117 A 1 HETATM 29 C CAW E15 . . . C 2 23.166 33.962 26.258 1 39.76 ? CAW E15 117 A 1 HETATM 30 C CAR E15 . . . C 2 22.498 36.382 28.059 1 48.4 ? CAR E15 117 A 1 HETATM 31 C CAS E15 . . . C 2 23.909 34.139 27.587 1 48.16 ? CAS E15 117 A 1 HETATM 32 C CBH E15 . . . C 2 16.529 36.475 25.474 1 40 ? CBH E15 117 A 1 HETATM 33 N NBR E15 . . . C 2 17.056 34.333 24.292 1 36.61 ? NBR E15 117 A 1 HETATM 34 O OAM E15 . . . C 2 17.357 36.142 26.258 1 34.48 ? OAM E15 117 A 1 HETATM 35 C CBQ E15 . . . C 2 15.928 35.419 24.505 1 40.28 ? CBQ E15 117 A 1 HETATM 36 C CBU E15 . . . C 2 14.678 34.641 25.037 1 43.78 ? CBU E15 117 A 1 HETATM 37 C CAZ E15 . . . C 2 16.702 32.958 24.908 1 34.32 ? CAZ E15 117 A 1 HETATM 38 C CAH E15 . . . C 2 13.795 35.518 25.952 1 36.01 ? CAH E15 117 A 1 HETATM 39 C CAI E15 . . . C 2 13.884 34.219 23.792 1 43.74 ? CAI E15 117 A 1 HETATM 40 S SBE E15 . . . C 2 15.345 33.206 25.882 1 40.33 ? SBE E15 117 A 1 HETATM 41 N NBB E15 . . . C 2 16.114 37.883 25.419 1 35 ? NBB E15 117 A 1 HETATM 42 C CBL E15 . . . C 2 16.66 38.884 26.359 1 38.78 ? CBL E15 117 A 1 HETATM 43 C CBS E15 . . . C 2 17.725 39.809 25.691 1 31.3 ? CBS E15 117 A 1 HETATM 44 C CAB E15 . . . C 2 18.916 38.94 25.205 1 29.35 ? CAB E15 117 A 1 HETATM 45 C CAC E15 . . . C 2 17.113 40.688 24.543 1 29.37 ? CAC E15 117 A 1 HETATM 46 C CAA E15 . . . C 2 15.457 39.746 26.802 1 46.12 ? CAA E15 117 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 46 #