data_3LIV # _model_server_result.job_id 4D0ToqXDORY3StUKUr8nZw _model_server_result.datetime_utc '2024-11-17 02:41:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3liv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":117}' # _entry.id 3LIV # _exptl.entry_id 3LIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 667.902 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R)-3-[(2S,3S)-3-[[(2S)-2-[[(2S)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-butanoyl]amino]-2-hydroxy-4-phenyl-but anoyl]-N-[(2R)-3,3-dimethylbutan-2-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LIV _cell.length_a 77.772 _cell.length_b 77.772 _cell.length_c 162.972 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H53 N5 O5 S' _chem_comp.formula_weight 667.902 _chem_comp.id E16 _chem_comp.mon_nstd_flag . _chem_comp.name '(4R)-3-[(2S,3S)-3-[[(2S)-2-[[(2S)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-butanoyl]amino]-2-hydroxy-4-phenyl-but anoyl]-N-[(2R)-3,3-dimethylbutan-2-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms KNI-10683 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBF OAK E16 doub 83 n n NAJ HNAJ E16 sing 84 n n NAJ HNAA E16 sing 85 n n CBM CBF E16 sing 86 n n CBM NAJ E16 sing 87 n n CBM CBK E16 sing 88 n n CBM HBM E16 sing 89 n n CBK CAX E16 sing 90 n y CAQ CAT E16 sing 91 n y CAQ HAQ E16 sing 92 n n CAT HAT E16 sing 93 n n CAU CAQ E16 doub 94 n y CAU HAU E16 sing 95 n n CAX CAT E16 doub 96 n y CAX HAX E16 sing 97 n n CAY CBK E16 doub 98 n y CAY CAU E16 sing 99 n y CAY HAY E16 sing 100 n n N CA E16 sing 101 n n N HN E16 sing 102 n n CA CB E16 sing 103 n n CA C E16 sing 104 n n CA HA E16 sing 105 n n CB CAG E16 sing 106 n n CB CG1 E16 sing 107 n n CB CG2 E16 sing 108 n n CAG HAG E16 sing 109 n n CAG HAGA E16 sing 110 n n CAG HAGB E16 sing 111 n n CG1 HG1 E16 sing 112 n n CG1 HG1A E16 sing 113 n n CG1 HG1B E16 sing 114 n n CG2 HG2 E16 sing 115 n n CG2 HG2A E16 sing 116 n n CG2 HG2B E16 sing 117 n n C O E16 doub 118 n n CBI CBN E16 sing 119 n n CBI OAN E16 doub 120 n n NBC CBO E16 sing 121 n n NBC HNBC E16 sing 122 n n CBN OAO E16 sing 123 n n CBN HBN E16 sing 124 n n CBJ CBA E16 sing 125 n n CBA HBA E16 sing 126 n n CBA HBAA E16 sing 127 n n CAP CAR E16 doub 128 n y CAP CAS E16 sing 129 n y CAP HAP E16 sing 130 n n CBO CBN E16 sing 131 n n CBO CBA E16 sing 132 n n CBO HBO E16 sing 133 n n OAO HOAO E16 sing 134 n n CAV CBJ E16 doub 135 n y CAV HAV E16 sing 136 n n CAW CBJ E16 sing 137 n y CAW HAW E16 sing 138 n n CAR CAV E16 sing 139 n y CAR HAR E16 sing 140 n n CAS CAW E16 doub 141 n y CAS HAS E16 sing 142 n n CBH CBQ E16 sing 143 n n OAM CBH E16 doub 144 n n CBQ NBR E16 sing 145 n n CBQ HBQ E16 sing 146 n n CBU CBQ E16 sing 147 n n CBU CAI E16 sing 148 n n CAZ NBR E16 sing 149 n n CAZ HAZ E16 sing 150 n n CAZ HAZA E16 sing 151 n n CAH CBU E16 sing 152 n n CAH HAH E16 sing 153 n n CAH HAHA E16 sing 154 n n CAH HAHB E16 sing 155 n n CAI HAI E16 sing 156 n n CAI HAIA E16 sing 157 n n CAI HAIB E16 sing 158 n n SBE CBU E16 sing 159 n n SBE CAZ E16 sing 160 n n NBB CBL E16 sing 161 n n NBB HNBB E16 sing 162 n n CBS CBL E16 sing 163 n n CBL CAA E16 sing 164 n n CBL HBL E16 sing 165 n n CAC CBS E16 sing 166 n n CAB CBS E16 sing 167 n n CBS CAD E16 sing 168 n n CAA HAA E16 sing 169 n n CAA HAAA E16 sing 170 n n CAA HAAB E16 sing 171 n n CAB HAB E16 sing 172 n n CAB HABA E16 sing 173 n n CAB HABB E16 sing 174 n n CAC HAC E16 sing 175 n n CAC HACA E16 sing 176 n n CAC HACB E16 sing 177 n n CAD HAD E16 sing 178 n n CAD HADA E16 sing 179 n n CAD HADB E16 sing 180 n n CBF N E16 sing 181 n n C NBC E16 sing 182 n n CBI NBR E16 sing 183 n n CBH NBB E16 sing 184 n n # _atom_sites.entry_id 3LIV _atom_sites.fract_transf_matrix[1][1] 0.012858 _atom_sites.fract_transf_matrix[1][2] 0.007424 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 E16 B 1 117 1 E16 E16 . D 3 HOH A 1 117 1 HOH HOH . D 3 HOH A 2 118 3 HOH HOH . D 3 HOH A 3 119 5 HOH HOH . D 3 HOH A 4 120 7 HOH HOH . D 3 HOH A 5 121 8 HOH HOH . D 3 HOH A 6 122 12 HOH HOH . D 3 HOH A 7 123 13 HOH HOH . D 3 HOH A 8 124 15 HOH HOH . D 3 HOH A 9 125 16 HOH HOH . D 3 HOH A 10 126 19 HOH HOH . D 3 HOH A 11 127 20 HOH HOH . D 3 HOH A 12 128 21 HOH HOH . D 3 HOH A 13 129 25 HOH HOH . D 3 HOH A 14 130 26 HOH HOH . D 3 HOH A 15 131 34 HOH HOH . D 3 HOH A 16 132 35 HOH HOH . D 3 HOH A 17 133 36 HOH HOH . D 3 HOH A 18 134 39 HOH HOH . D 3 HOH A 19 135 43 HOH HOH . D 3 HOH A 20 136 44 HOH HOH . D 3 HOH A 21 137 45 HOH HOH . D 3 HOH A 22 138 46 HOH HOH . D 3 HOH A 23 139 49 HOH HOH . D 3 HOH A 24 140 50 HOH HOH . D 3 HOH A 25 141 51 HOH HOH . D 3 HOH A 26 142 52 HOH HOH . D 3 HOH A 27 143 55 HOH HOH . D 3 HOH A 28 144 57 HOH HOH . D 3 HOH A 29 145 58 HOH HOH . D 3 HOH A 30 146 59 HOH HOH . D 3 HOH A 31 147 67 HOH HOH . D 3 HOH A 32 148 71 HOH HOH . D 3 HOH A 33 149 72 HOH HOH . D 3 HOH A 34 150 73 HOH HOH . D 3 HOH A 35 151 74 HOH HOH . D 3 HOH A 36 152 75 HOH HOH . D 3 HOH A 37 153 79 HOH HOH . D 3 HOH A 38 154 80 HOH HOH . D 3 HOH A 39 155 82 HOH HOH . E 3 HOH B 1 118 2 HOH HOH . E 3 HOH B 2 119 4 HOH HOH . E 3 HOH B 3 120 6 HOH HOH . E 3 HOH B 4 121 9 HOH HOH . E 3 HOH B 5 122 10 HOH HOH . E 3 HOH B 6 123 11 HOH HOH . E 3 HOH B 7 124 14 HOH HOH . E 3 HOH B 8 125 17 HOH HOH . E 3 HOH B 9 126 22 HOH HOH . E 3 HOH B 10 127 23 HOH HOH . E 3 HOH B 11 128 24 HOH HOH . E 3 HOH B 12 129 27 HOH HOH . E 3 HOH B 13 130 28 HOH HOH . E 3 HOH B 14 131 29 HOH HOH . E 3 HOH B 15 132 30 HOH HOH . E 3 HOH B 16 133 31 HOH HOH . E 3 HOH B 17 134 32 HOH HOH . E 3 HOH B 18 135 33 HOH HOH . E 3 HOH B 19 136 38 HOH HOH . E 3 HOH B 20 137 40 HOH HOH . E 3 HOH B 21 138 41 HOH HOH . E 3 HOH B 22 139 42 HOH HOH . E 3 HOH B 23 140 47 HOH HOH . E 3 HOH B 24 141 48 HOH HOH . E 3 HOH B 25 142 53 HOH HOH . E 3 HOH B 26 143 54 HOH HOH . E 3 HOH B 27 144 60 HOH HOH . E 3 HOH B 28 145 61 HOH HOH . E 3 HOH B 29 146 62 HOH HOH . E 3 HOH B 30 147 63 HOH HOH . E 3 HOH B 31 148 64 HOH HOH . E 3 HOH B 32 149 65 HOH HOH . E 3 HOH B 33 150 66 HOH HOH . E 3 HOH B 34 151 69 HOH HOH . E 3 HOH B 35 152 77 HOH HOH . E 3 HOH B 36 153 78 HOH HOH . E 3 HOH B 37 154 81 HOH HOH . E 3 HOH B 38 155 83 HOH HOH . E 3 HOH B 39 156 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBF E16 . . . C 2 23.712 29.337 26.458 1 40.79 ? CBF E16 117 B 1 HETATM 2 N NAJ E16 . . . C 2 25.705 28.097 27.327 1 49.85 ? NAJ E16 117 B 1 HETATM 3 O OAK E16 . . . C 2 23.898 29.055 25.315 1 39.51 ? OAK E16 117 B 1 HETATM 4 C CBM E16 . . . C 2 24.867 29.296 27.492 1 47.28 ? CBM E16 117 B 1 HETATM 5 C CBK E16 . . . C 2 25.77 30.552 27.283 1 51.56 ? CBK E16 117 B 1 HETATM 6 C CAQ E16 . . . C 2 27.568 33.088 26.899 1 57.95 ? CAQ E16 117 B 1 HETATM 7 C CAT E16 . . . C 2 26.732 32.53 25.718 1 57.02 ? CAT E16 117 B 1 HETATM 8 C CAU E16 . . . C 2 27.501 32.368 28.274 1 58.01 ? CAU E16 117 B 1 HETATM 9 C CAX E16 . . . C 2 25.841 31.276 25.913 1 54.2 ? CAX E16 117 B 1 HETATM 10 C CAY E16 . . . C 2 26.609 31.114 28.467 1 55.66 ? CAY E16 117 B 1 HETATM 11 N N E16 . . . C 2 22.384 29.75 26.904 1 32.95 ? N E16 117 B 1 HETATM 12 C CA E16 . . . C 2 21.347 29.829 25.895 1 26.53 ? CA E16 117 B 1 HETATM 13 C CB E16 . . . C 2 20.281 28.718 26.132 1 24.43 ? CB E16 117 B 1 HETATM 14 C CAG E16 . . . C 2 20.776 27.387 25.534 1 22.5 ? CAG E16 117 B 1 HETATM 15 C CG1 E16 . . . C 2 20.024 28.519 27.639 1 23.58 ? CG1 E16 117 B 1 HETATM 16 C CG2 E16 . . . C 2 18.967 29.114 25.412 1 21.44 ? CG2 E16 117 B 1 HETATM 17 C C E16 . . . C 2 20.737 31.254 25.953 1 25.4 ? C E16 117 B 1 HETATM 18 O O E16 . . . C 2 20.129 31.682 26.893 1 20.32 ? O E16 117 B 1 HETATM 19 C CBI E16 . . . C 2 18.315 34.234 23.612 1 24.24 ? CBI E16 117 B 1 HETATM 20 N NBC E16 . . . C 2 20.944 32.058 24.758 1 23.61 ? NBC E16 117 B 1 HETATM 21 O OAN E16 . . . C 2 18.39 35.297 23.131 1 26.84 ? OAN E16 117 B 1 HETATM 22 C CBN E16 . . . C 2 19.426 33.21 23.506 1 23.65 ? CBN E16 117 B 1 HETATM 23 C CBJ E16 . . . C 2 22.13 34.65 25.76 1 21.94 ? CBJ E16 117 B 1 HETATM 24 C CBA E16 . . . C 2 21.387 34.481 24.453 1 25.26 ? CBA E16 117 B 1 HETATM 25 C CAP E16 . . . C 2 23.629 34.992 28.391 1 28.7 ? CAP E16 117 B 1 HETATM 26 C CBO E16 . . . C 2 20.352 33.38 24.709 1 24.26 ? CBO E16 117 B 1 HETATM 27 O OAO E16 . . . C 2 20.105 33.326 22.293 1 25.46 ? OAO E16 117 B 1 HETATM 28 C CAV E16 . . . C 2 21.781 35.817 26.656 1 25.78 ? CAV E16 117 B 1 HETATM 29 C CAW E16 . . . C 2 23.214 33.649 26.146 1 27.71 ? CAW E16 117 B 1 HETATM 30 C CAR E16 . . . C 2 22.537 35.993 27.981 1 29.23 ? CAR E16 117 B 1 HETATM 31 C CAS E16 . . . C 2 23.967 33.808 27.467 1 28.2 ? CAS E16 117 B 1 HETATM 32 C CBH E16 . . . C 2 16.46 36.063 25.367 1 26.13 ? CBH E16 117 B 1 HETATM 33 N NBR E16 . . . C 2 17.106 33.891 24.308 1 27.07 ? NBR E16 117 B 1 HETATM 34 O OAM E16 . . . C 2 17.389 35.897 26.078 1 22.94 ? OAM E16 117 B 1 HETATM 35 C CBQ E16 . . . C 2 15.95 34.956 24.424 1 28.09 ? CBQ E16 117 B 1 HETATM 36 C CBU E16 . . . C 2 14.702 34.142 24.952 1 28.16 ? CBU E16 117 B 1 HETATM 37 C CAZ E16 . . . C 2 16.763 32.566 25.025 1 28.25 ? CAZ E16 117 B 1 HETATM 38 C CAH E16 . . . C 2 13.628 34.957 25.713 1 29.1 ? CAH E16 117 B 1 HETATM 39 C CAI E16 . . . C 2 14.034 33.562 23.702 1 27.92 ? CAI E16 117 B 1 HETATM 40 S SBE E16 . . . C 2 15.404 32.858 25.968 1 28.03 ? SBE E16 117 B 1 HETATM 41 N NBB E16 . . . C 2 15.778 37.342 25.378 1 27.04 ? NBB E16 117 B 1 HETATM 42 C CBL E16 . . . C 2 16.21 38.391 26.293 1 26.06 ? CBL E16 117 B 1 HETATM 43 C CBS E16 . . . C 2 17.458 39.208 25.825 1 24.52 ? CBS E16 117 B 1 HETATM 44 C CAA E16 . . . C 2 14.932 39.243 26.481 1 25.87 ? CAA E16 117 B 1 HETATM 45 C CAB E16 . . . C 2 18.614 38.328 25.276 1 23.03 ? CAB E16 117 B 1 HETATM 46 C CAC E16 . . . C 2 16.986 40.253 24.767 1 22.39 ? CAC E16 117 B 1 HETATM 47 C CAD E16 . . . C 2 18.089 39.881 27.057 1 20.9 ? CAD E16 117 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 47 #