data_3LJ0 # _model_server_result.job_id B7ObAnFwC7YzUFSe1PajSw _model_server_result.datetime_utc '2024-10-13 14:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1}' # _entry.id 3LJ0 # _exptl.entry_id 3LJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.236 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LJ0 _cell.length_a 131.02 _cell.length_b 131.02 _cell.length_c 175.82 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 182 A GLN 839 1_555 A N SEP 183 A SEP 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C SEP 183 A SEP 840 1_555 A N SEP 184 A SEP 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C SEP 184 A SEP 841 1_555 A N PHE 185 A PHE 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C ARG 186 A ARG 843 1_555 A N TPO 187 A TPO 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C GLN 182 B GLN 839 1_555 B N SEP 183 B SEP 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C SEP 183 B SEP 840 1_555 B N SEP 184 B SEP 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C SEP 184 B SEP 841 1_555 B N PHE 185 B PHE 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C ARG 186 B ARG 843 1_555 B N TPO 187 B TPO 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OD1 ASN 145 A ASN 802 1_555 C MG MG . A MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc2 A OD2 ASP 171 A ASP 828 1_555 C MG MG . A MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc3 A OD1 ASP 171 A ASP 828 1_555 D SR SR . A SR 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc4 E O1A ADP . A ADP 2101 1_555 C MG MG . A MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc5 E O3B ADP . A ADP 2101 1_555 C MG MG . A MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc6 E O2B ADP . A ADP 2101 1_555 D SR SR . A SR 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc7 B OD1 ASN 145 B ASN 802 1_555 G MG MG . B MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc8 B OD2 ASP 171 B ASP 828 1_555 G MG MG . B MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc9 B OD1 ASP 171 B ASP 828 1_555 H SR SR . B SR 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc10 I O1A ADP . B ADP 2101 1_555 G MG MG . B MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc11 I O3B ADP . B ADP 2101 1_555 G MG MG . B MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc12 I O2B ADP . B ADP 2101 1_555 H SR SR . B SR 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'C15 H10 O7' _chem_comp.formula_weight 302.236 _chem_comp.id QUE _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,7,3',4'-PENTAHYDROXYFLAVONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms QUERCETIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 QUE doub 319 n y C1 C6 QUE sing 320 n y C1 H1 QUE sing 321 n n C2 C3 QUE sing 322 n y C2 O30 QUE sing 323 n n C3 C4 QUE doub 324 n y C3 C9 QUE sing 325 n y C4 C5 QUE sing 326 n y C4 O12 QUE sing 327 n y C5 C6 QUE doub 328 n y C5 H5 QUE sing 329 n n C6 O29 QUE sing 330 n n C9 C10 QUE sing 331 n y C9 O13 QUE doub 332 n n C10 C11 QUE doub 333 n y C10 O27 QUE sing 334 n n C11 C14 QUE sing 335 n y C11 O12 QUE sing 336 n y C14 C15 QUE doub 337 n y C14 C19 QUE sing 338 n y C15 C16 QUE sing 339 n y C15 H15 QUE sing 340 n n C16 C17 QUE doub 341 n y C16 H16 QUE sing 342 n n C17 C18 QUE sing 343 n y C17 O24 QUE sing 344 n n C18 C19 QUE doub 345 n y C18 O23 QUE sing 346 n n C19 H19 QUE sing 347 n n O23 HO3 QUE sing 348 n n O24 HO4 QUE sing 349 n n O27 HO7 QUE sing 350 n n O29 HO9 QUE sing 351 n n O30 HO0 QUE sing 352 n n # _atom_sites.entry_id 3LJ0 _atom_sites.fract_transf_matrix[1][1] 0.007632 _atom_sites.fract_transf_matrix[1][2] 0.004407 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 2102 2102 MG MG . D 3 SR A 1 2103 2103 SR SR . E 4 ADP A 1 2101 2101 ADP ADP . F 5 QUE A 1 1 1 QUE QUE . G 2 MG B 1 2102 2102 MG MG . H 3 SR B 1 2103 2103 SR SR . I 4 ADP B 1 2101 2101 ADP ADP . J 5 QUE B 1 1 1 QUE QUE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 QUE . . . J 5 75.612 -39.772 32.7 1 49.47 ? C1 QUE 1 B 1 HETATM 2 C C2 QUE . . . J 5 74.383 -39.407 33.234 1 49.47 ? C2 QUE 1 B 1 HETATM 3 C C3 QUE . . . J 5 73.152 -39.911 32.59 1 49.47 ? C3 QUE 1 B 1 HETATM 4 C C4 QUE . . . J 5 73.287 -40.787 31.405 1 49.47 ? C4 QUE 1 B 1 HETATM 5 C C5 QUE . . . J 5 74.559 -41.099 30.939 1 49.47 ? C5 QUE 1 B 1 HETATM 6 C C6 QUE . . . J 5 75.696 -40.598 31.576 1 49.47 ? C6 QUE 1 B 1 HETATM 7 C C9 QUE . . . J 5 71.798 -39.572 33.091 1 49.47 ? C9 QUE 1 B 1 HETATM 8 C C10 QUE . . . J 5 70.631 -40.132 32.37 1 49.47 ? C10 QUE 1 B 1 HETATM 9 C C11 QUE . . . J 5 70.887 -41.02 31.198 1 49.47 ? C11 QUE 1 B 1 HETATM 10 C C14 QUE . . . J 5 69.794 -41.587 30.37 1 49.47 ? C14 QUE 1 B 1 HETATM 11 C C15 QUE . . . J 5 69.984 -42.759 29.633 1 49.47 ? C15 QUE 1 B 1 HETATM 12 C C16 QUE . . . J 5 68.974 -43.255 28.813 1 49.47 ? C16 QUE 1 B 1 HETATM 13 C C17 QUE . . . J 5 67.767 -42.565 28.707 1 49.47 ? C17 QUE 1 B 1 HETATM 14 C C18 QUE . . . J 5 67.577 -41.309 29.47 1 49.47 ? C18 QUE 1 B 1 HETATM 15 C C19 QUE . . . J 5 68.614 -40.853 30.264 1 49.47 ? C19 QUE 1 B 1 HETATM 16 O O12 QUE . . . J 5 72.172 -41.278 30.78 1 49.47 ? O12 QUE 1 B 1 HETATM 17 O O13 QUE . . . J 5 71.647 -38.836 34.088 1 49.47 ? O13 QUE 1 B 1 HETATM 18 O O23 QUE . . . J 5 66.416 -40.607 29.386 1 49.47 ? O23 QUE 1 B 1 HETATM 19 O O24 QUE . . . J 5 66.758 -43.028 27.923 1 49.47 ? O24 QUE 1 B 1 HETATM 20 O O27 QUE . . . J 5 69.374 -39.842 32.805 1 49.47 ? O27 QUE 1 B 1 HETATM 21 O O29 QUE . . . J 5 76.928 -40.925 31.094 1 49.47 ? O29 QUE 1 B 1 HETATM 22 O O30 QUE . . . J 5 74.304 -38.602 34.326 1 49.47 ? O30 QUE 1 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #