data_3LJ1 # _model_server_result.job_id J_NgVX7Mwnqq0aFr3kC7jQ _model_server_result.datetime_utc '2024-10-13 14:24:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3LJ1 # _exptl.entry_id 3LJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LJ1 _cell.length_a 125.55 _cell.length_b 125.55 _cell.length_c 174.39 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 1 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1,2 B,D 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -y+1,-x+1,-z+1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 62.775 108.729489 58.13 3 'crystal symmetry operation' 6_545 x,x-y-1,-z 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 62.775 -108.729489 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 182 A GLN 839 1_555 A N SEP 183 A SEP 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C SEP 183 A SEP 840 1_555 A N SEP 184 A SEP 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C SEP 184 A SEP 841 1_555 A N PHE 185 A PHE 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C ARG 186 A ARG 843 1_555 A N TPO 187 A TPO 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 B C GLN 182 B GLN 839 1_555 B N SEP 183 B SEP 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 B C SEP 183 B SEP 840 1_555 B N SEP 184 B SEP 841 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 B C SEP 184 B SEP 841 1_555 B N PHE 185 B PHE 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C ARG 186 B ARG 843 1_555 B N TPO 187 B TPO 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C15 H13 F2 N7 O2 S2' _chem_comp.formula_weight 425.436 _chem_comp.id DKI _chem_comp.mon_nstd_flag . _chem_comp.name 5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CDK 1/2 INHIBITOR' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FAF CAU DKI sing 83 n n CAU CAI DKI doub 84 n y CAU CAZ DKI sing 85 n y CAI CAH DKI sing 86 n y CAI HAI DKI sing 87 n n CAH CAJ DKI doub 88 n y CAH HAH DKI sing 89 n n CAJ CAV DKI sing 90 n y CAJ HAJ DKI sing 91 n n CAV FAG DKI sing 92 n n CAV CAZ DKI doub 93 n y CAZ NAQ DKI sing 94 n n NAQ CAS DKI sing 95 n n NAQ HAQ DKI sing 96 n n CAS SAE DKI doub 97 n n CAS NBA DKI sing 98 n n NBA NAP DKI sing 99 n y NBA CAT DKI sing 100 n y NAP CAX DKI doub 101 n y CAT NAA DKI sing 102 n n CAT NAO DKI doub 103 n y NAA HAA1 DKI sing 104 n n NAA HAA2 DKI sing 105 n n NAO CAX DKI sing 106 n y CAX NAR DKI sing 107 n n NAR CAW DKI sing 108 n n NAR HAR DKI sing 109 n n CAW CAL DKI doub 110 n y CAW CAK DKI sing 111 n y CAL CAN DKI sing 112 n y CAL HAL DKI sing 113 n n CAN CAY DKI doub 114 n y CAN HAN DKI sing 115 n n CAK CAM DKI doub 116 n y CAK HAK DKI sing 117 n n CAM CAY DKI sing 118 n y CAM HAM DKI sing 119 n n CAY SBB DKI sing 120 n n SBB OAC DKI doub 121 n n SBB OAD DKI doub 122 n n SBB NAB DKI sing 123 n n NAB HAB1 DKI sing 124 n n NAB HAB2 DKI sing 125 n n # _atom_sites.entry_id 3LJ1 _atom_sites.fract_transf_matrix[1][1] 0.007965 _atom_sites.fract_transf_matrix[1][2] 0.004599 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DKI A 1 1 1 DKI DKI . D 2 DKI B 1 1 1 DKI DKI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAF DKI . . . D 2 79.344 -10.22 9.275 1 48.8 ? FAF DKI 1 B 1 HETATM 2 C CAU DKI . . . D 2 79.926 -9.023 9.482 1 47.97 ? CAU DKI 1 B 1 HETATM 3 C CAI DKI . . . D 2 80.388 -8.678 10.746 1 48.05 ? CAI DKI 1 B 1 HETATM 4 C CAH DKI . . . D 2 80.996 -7.444 10.975 1 48 ? CAH DKI 1 B 1 HETATM 5 C CAJ DKI . . . D 2 81.174 -6.505 9.96 1 47.77 ? CAJ DKI 1 B 1 HETATM 6 C CAV DKI . . . D 2 80.746 -6.77 8.666 1 47.67 ? CAV DKI 1 B 1 HETATM 7 F FAG DKI . . . D 2 80.91 -5.883 7.671 1 48.25 ? FAG DKI 1 B 1 HETATM 8 C CAZ DKI . . . D 2 80.046 -8.034 8.381 1 47.47 ? CAZ DKI 1 B 1 HETATM 9 N NAQ DKI . . . D 2 79.879 -8.37 7.099 1 46.82 ? NAQ DKI 1 B 1 HETATM 10 C CAS DKI . . . D 2 80.864 -9.12 6.552 1 45.38 ? CAS DKI 1 B 1 HETATM 11 S SAE DKI . . . D 2 82.046 -9.861 7.288 1 44.99 ? SAE DKI 1 B 1 HETATM 12 N NBA DKI . . . D 2 80.774 -9.144 5.185 1 43.75 ? NBA DKI 1 B 1 HETATM 13 N NAP DKI . . . D 2 79.91 -8.271 4.541 1 42.89 ? NAP DKI 1 B 1 HETATM 14 C CAT DKI . . . D 2 81.378 -9.921 4.304 1 43.17 ? CAT DKI 1 B 1 HETATM 15 N NAA DKI . . . D 2 82.283 -10.886 4.604 1 43.56 ? NAA DKI 1 B 1 HETATM 16 N NAO DKI . . . D 2 80.978 -9.62 3.049 1 42.47 ? NAO DKI 1 B 1 HETATM 17 C CAX DKI . . . D 2 80.081 -8.624 3.259 1 42.2 ? CAX DKI 1 B 1 HETATM 18 N NAR DKI . . . D 2 79.446 -7.994 2.237 1 42.39 ? NAR DKI 1 B 1 HETATM 19 C CAW DKI . . . D 2 78.716 -6.842 2.351 1 42.12 ? CAW DKI 1 B 1 HETATM 20 C CAL DKI . . . D 2 78.325 -6.273 3.567 1 42.21 ? CAL DKI 1 B 1 HETATM 21 C CAN DKI . . . D 2 77.625 -5.072 3.604 1 42.58 ? CAN DKI 1 B 1 HETATM 22 C CAK DKI . . . D 2 78.395 -6.158 1.179 1 42.13 ? CAK DKI 1 B 1 HETATM 23 C CAM DKI . . . D 2 77.697 -4.954 1.215 1 42.64 ? CAM DKI 1 B 1 HETATM 24 C CAY DKI . . . D 2 77.301 -4.4 2.431 1 42.88 ? CAY DKI 1 B 1 HETATM 25 S SBB DKI . . . D 2 76.493 -3.015 2.502 1 43.41 ? SBB DKI 1 B 1 HETATM 26 O OAC DKI . . . D 2 77.437 -1.95 2.695 1 43.14 ? OAC DKI 1 B 1 HETATM 27 O OAD DKI . . . D 2 75.561 -3.033 3.6 1 42.78 ? OAD DKI 1 B 1 HETATM 28 N NAB DKI . . . D 2 75.697 -2.755 1.134 1 42.91 ? NAB DKI 1 B 1 # _model_server_stats.io_time_ms 178 _model_server_stats.parse_time_ms 101 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #