data_3LJY # _model_server_result.job_id TYiOenz6YmdqjAuz1fB2fw _model_server_result.datetime_utc '2025-05-22 05:52:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ljy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3LJY # _exptl.entry_id 3LJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.4 _cell.angle_gamma 90 _cell.entry_id 3LJY _cell.length_a 65.951 _cell.length_b 55.33 _cell.length_c 120.613 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,J 1 1 B,D,E,K 2 1 C,F,G,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 100 A PHE 119 1_555 A N MSE 101 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 101 A MSE 120 1_555 A N VAL 102 A VAL 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C ASN 141 A ASN 160 1_555 A N MSE 142 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C MSE 142 A MSE 161 1_555 A N VAL 143 A VAL 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 B C PHE 100 B PHE 119 1_555 B N MSE 101 B MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C MSE 101 B MSE 120 1_555 B N VAL 102 B VAL 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale7 B C ASN 141 B ASN 160 1_555 B N MSE 142 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 B C MSE 142 B MSE 161 1_555 B N VAL 143 B VAL 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 C C PHE 100 C PHE 119 1_555 C N MSE 101 C MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 C C MSE 101 C MSE 120 1_555 C N VAL 102 C VAL 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 C C ASN 141 C ASN 160 1_555 C N MSE 142 C MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 C C MSE 142 C MSE 161 1_555 C N VAL 143 C VAL 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 3LJY _atom_sites.fract_transf_matrix[1][1] 0.015163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004177 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PEG B 1 2 2 PEG PEG . E 2 PEG B 1 4 4 PEG PEG . F 3 CL C 1 1 1 CL CL . G 2 PEG C 1 3 3 PEG PEG . H 2 PEG C 1 5 5 PEG PEG . I 4 PGE C 1 6 6 PGE PGE . J 5 HOH A 1 7 7 HOH HOH . J 5 HOH A 2 9 9 HOH HOH . J 5 HOH A 3 12 12 HOH HOH . J 5 HOH A 4 13 13 HOH HOH . J 5 HOH A 5 15 15 HOH HOH . J 5 HOH A 6 16 16 HOH HOH . J 5 HOH A 7 18 18 HOH HOH . J 5 HOH A 8 263 23 HOH HOH . J 5 HOH A 9 264 26 HOH HOH . J 5 HOH A 10 265 30 HOH HOH . J 5 HOH A 11 266 31 HOH HOH . J 5 HOH A 12 267 35 HOH HOH . J 5 HOH A 13 268 36 HOH HOH . J 5 HOH A 14 269 38 HOH HOH . J 5 HOH A 15 270 39 HOH HOH . J 5 HOH A 16 271 40 HOH HOH . J 5 HOH A 17 272 41 HOH HOH . J 5 HOH A 18 273 50 HOH HOH . J 5 HOH A 19 274 54 HOH HOH . J 5 HOH A 20 275 55 HOH HOH . J 5 HOH A 21 276 57 HOH HOH . J 5 HOH A 22 277 59 HOH HOH . J 5 HOH A 23 278 61 HOH HOH . J 5 HOH A 24 279 63 HOH HOH . J 5 HOH A 25 280 65 HOH HOH . J 5 HOH A 26 281 66 HOH HOH . J 5 HOH A 27 282 69 HOH HOH . J 5 HOH A 28 283 72 HOH HOH . J 5 HOH A 29 284 73 HOH HOH . J 5 HOH A 30 285 79 HOH HOH . J 5 HOH A 31 286 81 HOH HOH . J 5 HOH A 32 287 89 HOH HOH . J 5 HOH A 33 288 90 HOH HOH . J 5 HOH A 34 289 91 HOH HOH . J 5 HOH A 35 290 93 HOH HOH . J 5 HOH A 36 291 96 HOH HOH . J 5 HOH A 37 292 97 HOH HOH . J 5 HOH A 38 293 101 HOH HOH . J 5 HOH A 39 294 103 HOH HOH . J 5 HOH A 40 295 104 HOH HOH . J 5 HOH A 41 296 107 HOH HOH . J 5 HOH A 42 297 108 HOH HOH . J 5 HOH A 43 298 110 HOH HOH . J 5 HOH A 44 299 112 HOH HOH . J 5 HOH A 45 300 113 HOH HOH . J 5 HOH A 46 301 114 HOH HOH . J 5 HOH A 47 302 115 HOH HOH . J 5 HOH A 48 303 116 HOH HOH . J 5 HOH A 49 304 119 HOH HOH . J 5 HOH A 50 305 124 HOH HOH . J 5 HOH A 51 306 124 HOH HOH . J 5 HOH A 52 307 125 HOH HOH . J 5 HOH A 53 308 127 HOH HOH . J 5 HOH A 54 309 133 HOH HOH . J 5 HOH A 55 310 134 HOH HOH . J 5 HOH A 56 311 135 HOH HOH . J 5 HOH A 57 312 136 HOH HOH . J 5 HOH A 58 313 139 HOH HOH . J 5 HOH A 59 314 142 HOH HOH . K 5 HOH B 1 19 19 HOH HOH . K 5 HOH B 2 263 33 HOH HOH . K 5 HOH B 3 264 44 HOH HOH . K 5 HOH B 4 265 45 HOH HOH . K 5 HOH B 5 266 60 HOH HOH . K 5 HOH B 6 267 77 HOH HOH . K 5 HOH B 7 268 82 HOH HOH . K 5 HOH B 8 269 100 HOH HOH . K 5 HOH B 9 270 120 HOH HOH . K 5 HOH B 10 271 121 HOH HOH . K 5 HOH B 11 272 128 HOH HOH . K 5 HOH B 12 273 129 HOH HOH . K 5 HOH B 13 274 141 HOH HOH . L 5 HOH C 1 8 8 HOH HOH . L 5 HOH C 2 10 10 HOH HOH . L 5 HOH C 3 11 11 HOH HOH . L 5 HOH C 4 14 14 HOH HOH . L 5 HOH C 5 17 17 HOH HOH . L 5 HOH C 6 263 20 HOH HOH . L 5 HOH C 7 264 21 HOH HOH . L 5 HOH C 8 265 22 HOH HOH . L 5 HOH C 9 266 24 HOH HOH . L 5 HOH C 10 267 25 HOH HOH . L 5 HOH C 11 268 27 HOH HOH . L 5 HOH C 12 269 28 HOH HOH . L 5 HOH C 13 270 29 HOH HOH . L 5 HOH C 14 271 32 HOH HOH . L 5 HOH C 15 272 34 HOH HOH . L 5 HOH C 16 273 37 HOH HOH . L 5 HOH C 17 274 42 HOH HOH . L 5 HOH C 18 275 43 HOH HOH . L 5 HOH C 19 276 46 HOH HOH . L 5 HOH C 20 277 47 HOH HOH . L 5 HOH C 21 278 48 HOH HOH . L 5 HOH C 22 279 49 HOH HOH . L 5 HOH C 23 280 51 HOH HOH . L 5 HOH C 24 281 52 HOH HOH . L 5 HOH C 25 282 53 HOH HOH . L 5 HOH C 26 283 56 HOH HOH . L 5 HOH C 27 284 58 HOH HOH . L 5 HOH C 28 285 62 HOH HOH . L 5 HOH C 29 286 64 HOH HOH . L 5 HOH C 30 287 67 HOH HOH . L 5 HOH C 31 288 68 HOH HOH . L 5 HOH C 32 289 70 HOH HOH . L 5 HOH C 33 290 71 HOH HOH . L 5 HOH C 34 291 74 HOH HOH . L 5 HOH C 35 292 75 HOH HOH . L 5 HOH C 36 293 76 HOH HOH . L 5 HOH C 37 294 78 HOH HOH . L 5 HOH C 38 295 80 HOH HOH . L 5 HOH C 39 296 83 HOH HOH . L 5 HOH C 40 297 84 HOH HOH . L 5 HOH C 41 298 85 HOH HOH . L 5 HOH C 42 299 86 HOH HOH . L 5 HOH C 43 300 87 HOH HOH . L 5 HOH C 44 301 88 HOH HOH . L 5 HOH C 45 302 92 HOH HOH . L 5 HOH C 46 303 94 HOH HOH . L 5 HOH C 47 304 95 HOH HOH . L 5 HOH C 48 305 98 HOH HOH . L 5 HOH C 49 306 99 HOH HOH . L 5 HOH C 50 307 102 HOH HOH . L 5 HOH C 51 308 105 HOH HOH . L 5 HOH C 52 309 106 HOH HOH . L 5 HOH C 53 310 109 HOH HOH . L 5 HOH C 54 311 111 HOH HOH . L 5 HOH C 55 312 117 HOH HOH . L 5 HOH C 56 313 118 HOH HOH . L 5 HOH C 57 314 122 HOH HOH . L 5 HOH C 58 315 123 HOH HOH . L 5 HOH C 59 316 126 HOH HOH . L 5 HOH C 60 317 130 HOH HOH . L 5 HOH C 61 318 131 HOH HOH . L 5 HOH C 62 319 132 HOH HOH . L 5 HOH C 63 320 137 HOH HOH . L 5 HOH C 64 321 138 HOH HOH . L 5 HOH C 65 322 140 HOH HOH . L 5 HOH C 66 323 143 HOH HOH . L 5 HOH C 67 324 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 2 12.361 22.465 53.529 1 67.39 ? C1 PEG 2 B 1 HETATM 2 O O1 PEG . . . D 2 13.657 21.98 53.926 1 62.74 ? O1 PEG 2 B 1 HETATM 3 C C2 PEG . . . D 2 11.982 22.172 52.065 1 65.54 ? C2 PEG 2 B 1 HETATM 4 O O2 PEG . . . D 2 10.59 21.818 51.944 1 68 ? O2 PEG 2 B 1 HETATM 5 C C3 PEG . . . D 2 10.316 20.407 51.796 1 67.21 ? C3 PEG 2 B 1 HETATM 6 C C4 PEG . . . D 2 8.819 20.086 51.644 1 68.81 ? C4 PEG 2 B 1 HETATM 7 O O4 PEG . . . D 2 8.152 20.934 50.69 1 65.86 ? O4 PEG 2 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #