data_3LK1 # _model_server_result.job_id OJHwAFiHYZ6JNl4VKFPurg _model_server_result.datetime_utc '2024-12-18 19:17:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":92}' # _entry.id 3LK1 # _exptl.entry_id 3LK1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.651 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ETHYL MERCURY ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LK1 _cell.length_a 35.194 _cell.length_b 88.792 _cell.length_c 58.996 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 19 A SER 18 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A O GLU 22 A GLU 21 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc3 A O ASP 24 A ASP 23 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc4 A O LYS 27 A LYS 26 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc9 A OD1 ASP 66 A ASP 65 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc10 A O GLU 68 A GLU 67 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc11 A OE1 GLU 73 A GLU 72 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc12 A OE2 GLU 73 A GLU 72 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc13 A SG CYS 85 A CYS 84 1_555 D HG EMC . A EMC 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc14 B CA CA . A CA 90 1_555 F O HOH . A HOH 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc15 C CA CA . A CA 91 1_555 F O HOH . A HOH 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc16 D HG EMC . A EMC 92 1_555 F O HOH . A HOH 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? # _chem_comp.formula 'C2 H5 Hg 1' _chem_comp.formula_weight 229.651 _chem_comp.id EMC _chem_comp.mon_nstd_flag . _chem_comp.name 'ETHYL MERCURY ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HG C1 EMC sing 83 n n C1 C2 EMC sing 84 n n C1 H11 EMC sing 85 n n C1 H12 EMC sing 86 n n C2 H21 EMC sing 87 n n C2 H22 EMC sing 88 n n C2 H23 EMC sing 89 n n # _atom_sites.entry_id 3LK1 _atom_sites.fract_transf_matrix[1][1] 0.028414 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01695 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 90 90 CA CA . C 2 CA A 1 91 91 CA CA . D 3 EMC A 1 92 92 EMC EMC . E 4 JKE A 1 93 93 JKE JKE . F 5 HOH A 1 94 94 HOH HOH . F 5 HOH A 2 95 95 HOH HOH . F 5 HOH A 3 96 96 HOH HOH . F 5 HOH A 4 97 97 HOH HOH . F 5 HOH A 5 98 98 HOH HOH . F 5 HOH A 6 99 99 HOH HOH . F 5 HOH A 7 100 100 HOH HOH . F 5 HOH A 8 101 101 HOH HOH . F 5 HOH A 9 102 102 HOH HOH . F 5 HOH A 10 103 103 HOH HOH . F 5 HOH A 11 104 104 HOH HOH . F 5 HOH A 12 105 105 HOH HOH . F 5 HOH A 13 106 106 HOH HOH . F 5 HOH A 14 107 107 HOH HOH . F 5 HOH A 15 108 108 HOH HOH . F 5 HOH A 16 109 109 HOH HOH . F 5 HOH A 17 110 110 HOH HOH . F 5 HOH A 18 111 111 HOH HOH . F 5 HOH A 19 112 112 HOH HOH . F 5 HOH A 20 113 113 HOH HOH . F 5 HOH A 21 114 114 HOH HOH . F 5 HOH A 22 115 115 HOH HOH . F 5 HOH A 23 116 116 HOH HOH . F 5 HOH A 24 117 117 HOH HOH . F 5 HOH A 25 118 118 HOH HOH . F 5 HOH A 26 119 119 HOH HOH . F 5 HOH A 27 120 120 HOH HOH . F 5 HOH A 28 121 121 HOH HOH . F 5 HOH A 29 122 122 HOH HOH . F 5 HOH A 30 123 123 HOH HOH . F 5 HOH A 31 124 124 HOH HOH . F 5 HOH A 32 125 125 HOH HOH . F 5 HOH A 33 126 126 HOH HOH . F 5 HOH A 34 127 127 HOH HOH . F 5 HOH A 35 128 128 HOH HOH . F 5 HOH A 36 129 129 HOH HOH . F 5 HOH A 37 130 130 HOH HOH . F 5 HOH A 38 131 131 HOH HOH . F 5 HOH A 39 132 132 HOH HOH . F 5 HOH A 40 133 133 HOH HOH . F 5 HOH A 41 134 134 HOH HOH . F 5 HOH A 42 135 135 HOH HOH . F 5 HOH A 43 136 136 HOH HOH . F 5 HOH A 44 137 137 HOH HOH . F 5 HOH A 45 138 138 HOH HOH . F 5 HOH A 46 139 139 HOH HOH . F 5 HOH A 47 140 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 HG HG EMC . . . D 3 -1.879 0.46 -12.613 0.25 55.8 ? HG EMC 92 A 1 HETATM 2 C C1 EMC . . . D 3 -1.957 0.941 -14.94 1 57.61 ? C1 EMC 92 A 1 HETATM 3 C C2 EMC . . . D 3 -2.963 2.052 -15.185 1 55.71 ? C2 EMC 92 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 3 #