data_3LK1
#
_model_server_result.job_id            gfsbw04c2VwN5ptswPRcxQ 
_model_server_result.datetime_utc      '2024-11-07 13:26:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3lk1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":93}' 
#
_entry.id    3LK1 
#
_exptl.entry_id    3LK1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.186 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-sulfanylbenzoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3LK1 
_cell.length_a            35.194 
_cell.length_b            88.792 
_cell.length_c            58.996 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3LK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 19 A SER 18 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc2 A O GLU 22 A GLU 21 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc3 A O ASP 24 A ASP 23 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc4 A O LYS 27 A LYS 26 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 C CA CA . A CA 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc9 A OD1 ASP 66 A ASP 65 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc10 A O GLU 68 A GLU 67 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc11 A OE1 GLU 73 A GLU 72 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc12 A OE2 GLU 73 A GLU 72 1_555 B CA CA . A CA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc13 A SG CYS 85 A CYS 84 1_555 D HG EMC . A EMC 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
metalc ? metalc14 B CA CA . A CA 90 1_555 F O HOH . A HOH 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc15 C CA CA . A CA 91 1_555 F O HOH . A HOH 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc16 D HG EMC . A EMC 92 1_555 F O HOH . A HOH 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
#
_chem_comp.formula           'C7 H6 O2 S' 
_chem_comp.formula_weight    154.186 
_chem_comp.id                JKE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-sulfanylbenzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
SD CE1 JKE sing 180 n n 
SD HSD JKE sing 181 n n 
CG CZ JKE sing 182 n n 
CG OD1 JKE doub 183 n n 
CG OD2 JKE sing 184 n n 
CZ CE1 JKE doub 185 n y 
CZ CE2 JKE sing 186 n y 
CD1 CE1 JKE sing 187 n y 
CD1 CG1 JKE doub 188 n y 
CD1 HD1 JKE sing 189 n n 
CD2 CE2 JKE doub 190 n y 
CD2 CG1 JKE sing 191 n y 
CD2 HD2 JKE sing 192 n n 
CE2 HE2 JKE sing 193 n n 
CG1 HG1 JKE sing 194 n n 
OD2 H6 JKE sing 195 n n 
#
_atom_sites.entry_id                     3LK1 
_atom_sites.fract_transf_matrix[1][1]    0.028414 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011262 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01695 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 90 90 CA CA . 
C 2 CA A 1 91 91 CA CA . 
D 3 EMC A 1 92 92 EMC EMC . 
E 4 JKE A 1 93 93 JKE JKE . 
F 5 HOH A 1 94 94 HOH HOH . 
F 5 HOH A 2 95 95 HOH HOH . 
F 5 HOH A 3 96 96 HOH HOH . 
F 5 HOH A 4 97 97 HOH HOH . 
F 5 HOH A 5 98 98 HOH HOH . 
F 5 HOH A 6 99 99 HOH HOH . 
F 5 HOH A 7 100 100 HOH HOH . 
F 5 HOH A 8 101 101 HOH HOH . 
F 5 HOH A 9 102 102 HOH HOH . 
F 5 HOH A 10 103 103 HOH HOH . 
F 5 HOH A 11 104 104 HOH HOH . 
F 5 HOH A 12 105 105 HOH HOH . 
F 5 HOH A 13 106 106 HOH HOH . 
F 5 HOH A 14 107 107 HOH HOH . 
F 5 HOH A 15 108 108 HOH HOH . 
F 5 HOH A 16 109 109 HOH HOH . 
F 5 HOH A 17 110 110 HOH HOH . 
F 5 HOH A 18 111 111 HOH HOH . 
F 5 HOH A 19 112 112 HOH HOH . 
F 5 HOH A 20 113 113 HOH HOH . 
F 5 HOH A 21 114 114 HOH HOH . 
F 5 HOH A 22 115 115 HOH HOH . 
F 5 HOH A 23 116 116 HOH HOH . 
F 5 HOH A 24 117 117 HOH HOH . 
F 5 HOH A 25 118 118 HOH HOH . 
F 5 HOH A 26 119 119 HOH HOH . 
F 5 HOH A 27 120 120 HOH HOH . 
F 5 HOH A 28 121 121 HOH HOH . 
F 5 HOH A 29 122 122 HOH HOH . 
F 5 HOH A 30 123 123 HOH HOH . 
F 5 HOH A 31 124 124 HOH HOH . 
F 5 HOH A 32 125 125 HOH HOH . 
F 5 HOH A 33 126 126 HOH HOH . 
F 5 HOH A 34 127 127 HOH HOH . 
F 5 HOH A 35 128 128 HOH HOH . 
F 5 HOH A 36 129 129 HOH HOH . 
F 5 HOH A 37 130 130 HOH HOH . 
F 5 HOH A 38 131 131 HOH HOH . 
F 5 HOH A 39 132 132 HOH HOH . 
F 5 HOH A 40 133 133 HOH HOH . 
F 5 HOH A 41 134 134 HOH HOH . 
F 5 HOH A 42 135 135 HOH HOH . 
F 5 HOH A 43 136 136 HOH HOH . 
F 5 HOH A 44 137 137 HOH HOH . 
F 5 HOH A 45 138 138 HOH HOH . 
F 5 HOH A 46 139 139 HOH HOH . 
F 5 HOH A 47 140 140 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S SD JKE . . . E 4 -14.479 9.468 -9.193 0.25 91.45 ? SD JKE 93 A 1 
HETATM 2 C CG JKE . . . E 4 -11.35 9.602 -9.485 1 91.12 ? CG JKE 93 A 1 
HETATM 3 C CZ JKE . . . E 4 -12.009 10.554 -8.537 1 91.23 ? CZ JKE 93 A 1 
HETATM 4 C CD1 JKE . . . E 4 -14.048 11.449 -7.446 1 91.39 ? CD1 JKE 93 A 1 
HETATM 5 O OD1 JKE . . . E 4 -11.538 9.738 -10.711 1 91.56 ? OD1 JKE 93 A 1 
HETATM 6 C CD2 JKE . . . E 4 -11.852 12.342 -6.93 1 91.2 ? CD2 JKE 93 A 1 
HETATM 7 O OD2 JKE . . . E 4 -10.63 8.694 -9.019 1 90.98 ? OD2 JKE 93 A 1 
HETATM 8 C CE1 JKE . . . E 4 -13.485 10.549 -8.344 1 91.33 ? CE1 JKE 93 A 1 
HETATM 9 C CE2 JKE . . . E 4 -11.239 11.46 -7.816 1 91.41 ? CE2 JKE 93 A 1 
HETATM 10 C CG1 JKE . . . E 4 -13.234 12.336 -6.746 1 91.35 ? CG1 JKE 93 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           10 
#