data_3LK5 # _model_server_result.job_id aDlhwzRs8g2lkWWwydRp2w _model_server_result.datetime_utc '2024-12-14 22:44:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3LK5 # _exptl.entry_id 3LK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LK5 _cell.length_a 125.434 _cell.length_b 125.434 _cell.length_c 52.067 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_674 x-y+1,-y+2,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 217.258061 -17.355667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 153 A ASP 153 1_555 A N MSE 154 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 154 A MSE 154 1_555 A N ALA 155 A ALA 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ASP 161 A ASP 161 1_555 A N MSE 162 A MSE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 A C MSE 162 A MSE 162 1_555 A N LEU 163 A LEU 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C GLY 182 A GLY 182 1_555 A N MSE 183 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 183 A MSE 183 1_555 A N ARG 184 A ARG 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3LK5 _atom_sites.fract_transf_matrix[1][1] 0.007972 _atom_sites.fract_transf_matrix[1][2] 0.004603 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 500 500 GOL GOL . C 3 HOH A 1 381 1 HOH HOH . C 3 HOH A 2 382 2 HOH HOH . C 3 HOH A 3 383 3 HOH HOH . C 3 HOH A 4 384 4 HOH HOH . C 3 HOH A 5 385 5 HOH HOH . C 3 HOH A 6 386 7 HOH HOH . C 3 HOH A 7 387 8 HOH HOH . C 3 HOH A 8 388 9 HOH HOH . C 3 HOH A 9 389 10 HOH HOH . C 3 HOH A 10 390 11 HOH HOH . C 3 HOH A 11 391 12 HOH HOH . C 3 HOH A 12 392 13 HOH HOH . C 3 HOH A 13 393 14 HOH HOH . C 3 HOH A 14 394 15 HOH HOH . C 3 HOH A 15 395 16 HOH HOH . C 3 HOH A 16 396 17 HOH HOH . C 3 HOH A 17 397 19 HOH HOH . C 3 HOH A 18 398 20 HOH HOH . C 3 HOH A 19 399 21 HOH HOH . C 3 HOH A 20 400 22 HOH HOH . C 3 HOH A 21 401 23 HOH HOH . C 3 HOH A 22 402 24 HOH HOH . C 3 HOH A 23 403 25 HOH HOH . C 3 HOH A 24 404 26 HOH HOH . C 3 HOH A 25 405 27 HOH HOH . C 3 HOH A 26 406 28 HOH HOH . C 3 HOH A 27 407 29 HOH HOH . C 3 HOH A 28 408 30 HOH HOH . C 3 HOH A 29 409 31 HOH HOH . C 3 HOH A 30 410 32 HOH HOH . C 3 HOH A 31 411 34 HOH HOH . C 3 HOH A 32 412 35 HOH HOH . C 3 HOH A 33 413 36 HOH HOH . C 3 HOH A 34 414 37 HOH HOH . C 3 HOH A 35 415 38 HOH HOH . C 3 HOH A 36 416 39 HOH HOH . C 3 HOH A 37 417 40 HOH HOH . C 3 HOH A 38 418 42 HOH HOH . C 3 HOH A 39 419 43 HOH HOH . C 3 HOH A 40 420 45 HOH HOH . C 3 HOH A 41 421 46 HOH HOH . C 3 HOH A 42 422 47 HOH HOH . C 3 HOH A 43 423 48 HOH HOH . C 3 HOH A 44 424 49 HOH HOH . C 3 HOH A 45 425 50 HOH HOH . C 3 HOH A 46 426 51 HOH HOH . C 3 HOH A 47 427 54 HOH HOH . C 3 HOH A 48 428 55 HOH HOH . C 3 HOH A 49 429 56 HOH HOH . C 3 HOH A 50 430 57 HOH HOH . C 3 HOH A 51 431 58 HOH HOH . C 3 HOH A 52 432 59 HOH HOH . C 3 HOH A 53 433 60 HOH HOH . C 3 HOH A 54 434 61 HOH HOH . C 3 HOH A 55 435 64 HOH HOH . C 3 HOH A 56 436 66 HOH HOH . C 3 HOH A 57 437 67 HOH HOH . C 3 HOH A 58 438 68 HOH HOH . C 3 HOH A 59 439 69 HOH HOH . C 3 HOH A 60 440 70 HOH HOH . C 3 HOH A 61 441 71 HOH HOH . C 3 HOH A 62 442 72 HOH HOH . C 3 HOH A 63 443 73 HOH HOH . C 3 HOH A 64 444 75 HOH HOH . C 3 HOH A 65 445 76 HOH HOH . C 3 HOH A 66 446 77 HOH HOH . C 3 HOH A 67 447 78 HOH HOH . C 3 HOH A 68 448 79 HOH HOH . C 3 HOH A 69 449 80 HOH HOH . C 3 HOH A 70 450 81 HOH HOH . C 3 HOH A 71 451 82 HOH HOH . C 3 HOH A 72 452 83 HOH HOH . C 3 HOH A 73 453 85 HOH HOH . C 3 HOH A 74 454 87 HOH HOH . C 3 HOH A 75 455 88 HOH HOH . C 3 HOH A 76 456 90 HOH HOH . C 3 HOH A 77 457 91 HOH HOH . C 3 HOH A 78 458 92 HOH HOH . C 3 HOH A 79 459 93 HOH HOH . C 3 HOH A 80 460 94 HOH HOH . C 3 HOH A 81 461 95 HOH HOH . C 3 HOH A 82 462 97 HOH HOH . C 3 HOH A 83 463 99 HOH HOH . C 3 HOH A 84 464 100 HOH HOH . C 3 HOH A 85 465 101 HOH HOH . C 3 HOH A 86 466 103 HOH HOH . C 3 HOH A 87 467 104 HOH HOH . C 3 HOH A 88 468 106 HOH HOH . C 3 HOH A 89 469 108 HOH HOH . C 3 HOH A 90 470 109 HOH HOH . C 3 HOH A 91 471 110 HOH HOH . C 3 HOH A 92 472 112 HOH HOH . C 3 HOH A 93 473 113 HOH HOH . C 3 HOH A 94 474 114 HOH HOH . C 3 HOH A 95 475 115 HOH HOH . C 3 HOH A 96 476 116 HOH HOH . C 3 HOH A 97 477 117 HOH HOH . C 3 HOH A 98 478 118 HOH HOH . C 3 HOH A 99 479 119 HOH HOH . C 3 HOH A 100 480 120 HOH HOH . C 3 HOH A 101 481 121 HOH HOH . C 3 HOH A 102 482 122 HOH HOH . C 3 HOH A 103 483 123 HOH HOH . C 3 HOH A 104 484 125 HOH HOH . C 3 HOH A 105 485 126 HOH HOH . C 3 HOH A 106 486 127 HOH HOH . C 3 HOH A 107 487 128 HOH HOH . C 3 HOH A 108 488 129 HOH HOH . C 3 HOH A 109 489 130 HOH HOH . C 3 HOH A 110 490 132 HOH HOH . C 3 HOH A 111 491 133 HOH HOH . C 3 HOH A 112 492 134 HOH HOH . C 3 HOH A 113 493 135 HOH HOH . C 3 HOH A 114 494 136 HOH HOH . C 3 HOH A 115 495 137 HOH HOH . C 3 HOH A 116 496 138 HOH HOH . C 3 HOH A 117 497 139 HOH HOH . C 3 HOH A 118 498 140 HOH HOH . C 3 HOH A 119 499 141 HOH HOH . C 3 HOH A 120 501 142 HOH HOH . C 3 HOH A 121 502 143 HOH HOH . C 3 HOH A 122 503 144 HOH HOH . C 3 HOH A 123 504 145 HOH HOH . C 3 HOH A 124 505 146 HOH HOH . C 3 HOH A 125 506 147 HOH HOH . C 3 HOH A 126 507 149 HOH HOH . C 3 HOH A 127 508 150 HOH HOH . C 3 HOH A 128 509 151 HOH HOH . C 3 HOH A 129 510 152 HOH HOH . C 3 HOH A 130 511 153 HOH HOH . C 3 HOH A 131 512 154 HOH HOH . C 3 HOH A 132 513 155 HOH HOH . C 3 HOH A 133 514 156 HOH HOH . C 3 HOH A 134 515 158 HOH HOH . C 3 HOH A 135 516 161 HOH HOH . C 3 HOH A 136 517 162 HOH HOH . C 3 HOH A 137 518 163 HOH HOH . C 3 HOH A 138 519 164 HOH HOH . C 3 HOH A 139 520 166 HOH HOH . C 3 HOH A 140 521 168 HOH HOH . C 3 HOH A 141 522 169 HOH HOH . C 3 HOH A 142 523 170 HOH HOH . C 3 HOH A 143 524 171 HOH HOH . C 3 HOH A 144 525 172 HOH HOH . C 3 HOH A 145 526 173 HOH HOH . C 3 HOH A 146 527 174 HOH HOH . C 3 HOH A 147 528 175 HOH HOH . C 3 HOH A 148 529 176 HOH HOH . C 3 HOH A 149 530 177 HOH HOH . C 3 HOH A 150 531 178 HOH HOH . C 3 HOH A 151 532 180 HOH HOH . C 3 HOH A 152 533 181 HOH HOH . C 3 HOH A 153 534 182 HOH HOH . C 3 HOH A 154 535 184 HOH HOH . C 3 HOH A 155 536 185 HOH HOH . C 3 HOH A 156 537 191 HOH HOH . C 3 HOH A 157 538 192 HOH HOH . C 3 HOH A 158 539 199 HOH HOH . C 3 HOH A 159 540 201 HOH HOH . C 3 HOH A 160 541 204 HOH HOH . C 3 HOH A 161 542 207 HOH HOH . C 3 HOH A 162 543 208 HOH HOH . C 3 HOH A 163 544 209 HOH HOH . C 3 HOH A 164 545 211 HOH HOH . C 3 HOH A 165 546 215 HOH HOH . C 3 HOH A 166 547 216 HOH HOH . C 3 HOH A 167 548 219 HOH HOH . C 3 HOH A 168 549 220 HOH HOH . C 3 HOH A 169 550 222 HOH HOH . C 3 HOH A 170 551 223 HOH HOH . C 3 HOH A 171 552 224 HOH HOH . C 3 HOH A 172 553 225 HOH HOH . C 3 HOH A 173 554 226 HOH HOH . C 3 HOH A 174 555 228 HOH HOH . C 3 HOH A 175 556 229 HOH HOH . C 3 HOH A 176 557 230 HOH HOH . C 3 HOH A 177 558 231 HOH HOH . C 3 HOH A 178 559 232 HOH HOH . C 3 HOH A 179 560 233 HOH HOH . C 3 HOH A 180 561 235 HOH HOH . C 3 HOH A 181 562 236 HOH HOH . C 3 HOH A 182 563 237 HOH HOH . C 3 HOH A 183 564 238 HOH HOH . C 3 HOH A 184 565 239 HOH HOH . C 3 HOH A 185 566 240 HOH HOH . C 3 HOH A 186 567 241 HOH HOH . C 3 HOH A 187 568 242 HOH HOH . C 3 HOH A 188 569 243 HOH HOH . C 3 HOH A 189 570 244 HOH HOH . C 3 HOH A 190 571 245 HOH HOH . C 3 HOH A 191 572 246 HOH HOH . C 3 HOH A 192 573 247 HOH HOH . C 3 HOH A 193 574 248 HOH HOH . C 3 HOH A 194 575 249 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -4.802 98.019 5.563 1 49.76 ? C1 GOL 500 A 1 HETATM 2 O O1 GOL . . . B 2 -5.148 99.093 6.358 1 45.09 ? O1 GOL 500 A 1 HETATM 3 C C2 GOL . . . B 2 -3.535 97.721 6.309 1 45.28 ? C2 GOL 500 A 1 HETATM 4 O O2 GOL . . . B 2 -3.807 97.645 7.679 1 51.24 ? O2 GOL 500 A 1 HETATM 5 C C3 GOL . . . B 2 -2.712 96.529 5.882 1 50.41 ? C3 GOL 500 A 1 HETATM 6 O O3 GOL . . . B 2 -1.457 96.879 6.427 1 40.46 ? O3 GOL 500 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #