data_3LK8 # _model_server_result.job_id GNzoQvFKsELDNXk34KsHBw _model_server_result.datetime_utc '2024-11-22 07:39:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":267}' # _entry.id 3LK8 # _exptl.entry_id 3LK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.16 _cell.angle_gamma 90 _cell.entry_id 3LK8 _cell.length_a 51.708 _cell.length_b 60.251 _cell.length_c 54.144 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O4 Z79 . A Z79 0 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 G O5 Z79 . A Z79 0 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 H O HOH . A HOH 5 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc4 H O HOH . A HOH 8 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc5 H O HOH . A HOH 45 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 A OD2 ASP 19 A ASP 124 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc7 A OD1 ASP 19 A ASP 124 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc8 A O ASP 53 A ASP 158 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc9 A NE2 HIS 63 A HIS 168 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc10 A OD1 ASP 65 A ASP 170 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc11 A OD2 ASP 70 A ASP 175 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc12 A O GLY 71 A GLY 176 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc13 A O GLY 73 A GLY 178 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc14 A O ILE 75 A ILE 180 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc15 A NE2 HIS 78 A HIS 183 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc16 A O GLY 85 A GLY 190 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc17 A O GLY 87 A GLY 192 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc18 A OD2 ASP 89 A ASP 194 1_555 D CA CA . A CA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc19 A ND1 HIS 91 A HIS 196 1_555 C ZN ZN . A ZN 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc20 A OD1 ASP 93 A ASP 198 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc21 A O GLU 94 A GLU 199 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc22 A OE2 GLU 94 A GLU 199 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc23 A O GLU 96 A GLU 201 1_555 E CA CA . A CA 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc24 A OE2 GLU 96 A GLU 201 1_555 F CA CA . A CA 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc25 A NE2 HIS 113 A HIS 218 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc26 A NE2 HIS 117 A HIS 222 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc27 A NE2 HIS 123 A HIS 228 1_555 B ZN ZN . A ZN 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc28 D CA CA . A CA 266 1_555 H O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3LK8 _atom_sites.fract_transf_matrix[1][1] 0.01934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009083 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 264 264 ZN ZN . C 2 ZN A 1 265 265 ZN ZN . D 3 CA A 1 266 266 CA CA . E 3 CA A 1 267 267 CA CA . F 3 CA A 1 268 268 CA CA . G 4 Z79 A 1 0 0 Z79 Z79 . H 5 HOH A 1 1 1 HOH HOH . H 5 HOH A 2 2 2 HOH HOH . H 5 HOH A 3 4 4 HOH HOH . H 5 HOH A 4 5 5 HOH HOH . H 5 HOH A 5 6 6 HOH HOH . H 5 HOH A 6 7 7 HOH HOH . H 5 HOH A 7 8 8 HOH HOH . H 5 HOH A 8 9 9 HOH HOH . H 5 HOH A 9 10 10 HOH HOH . H 5 HOH A 10 11 11 HOH HOH . H 5 HOH A 11 12 12 HOH HOH . H 5 HOH A 12 13 13 HOH HOH . H 5 HOH A 13 14 14 HOH HOH . H 5 HOH A 14 15 15 HOH HOH . H 5 HOH A 15 17 17 HOH HOH . H 5 HOH A 16 18 18 HOH HOH . H 5 HOH A 17 19 19 HOH HOH . H 5 HOH A 18 20 20 HOH HOH . H 5 HOH A 19 21 21 HOH HOH . H 5 HOH A 20 22 22 HOH HOH . H 5 HOH A 21 23 23 HOH HOH . H 5 HOH A 22 24 24 HOH HOH . H 5 HOH A 23 25 25 HOH HOH . H 5 HOH A 24 26 26 HOH HOH . H 5 HOH A 25 27 27 HOH HOH . H 5 HOH A 26 28 28 HOH HOH . H 5 HOH A 27 29 29 HOH HOH . H 5 HOH A 28 30 30 HOH HOH . H 5 HOH A 29 31 31 HOH HOH . H 5 HOH A 30 32 32 HOH HOH . H 5 HOH A 31 33 33 HOH HOH . H 5 HOH A 32 34 34 HOH HOH . H 5 HOH A 33 35 35 HOH HOH . H 5 HOH A 34 36 36 HOH HOH . H 5 HOH A 35 37 37 HOH HOH . H 5 HOH A 36 38 38 HOH HOH . H 5 HOH A 37 39 39 HOH HOH . H 5 HOH A 38 40 40 HOH HOH . H 5 HOH A 39 41 41 HOH HOH . H 5 HOH A 40 42 42 HOH HOH . H 5 HOH A 41 43 43 HOH HOH . H 5 HOH A 42 44 44 HOH HOH . H 5 HOH A 43 45 45 HOH HOH . H 5 HOH A 44 46 46 HOH HOH . H 5 HOH A 45 47 47 HOH HOH . H 5 HOH A 46 48 48 HOH HOH . H 5 HOH A 47 49 49 HOH HOH . H 5 HOH A 48 50 50 HOH HOH . H 5 HOH A 49 51 51 HOH HOH . H 5 HOH A 50 52 52 HOH HOH . H 5 HOH A 51 53 53 HOH HOH . H 5 HOH A 52 54 54 HOH HOH . H 5 HOH A 53 55 55 HOH HOH . H 5 HOH A 54 56 56 HOH HOH . H 5 HOH A 55 57 57 HOH HOH . H 5 HOH A 56 58 58 HOH HOH . H 5 HOH A 57 59 59 HOH HOH . H 5 HOH A 58 60 60 HOH HOH . H 5 HOH A 59 61 61 HOH HOH . H 5 HOH A 60 62 62 HOH HOH . H 5 HOH A 61 63 63 HOH HOH . H 5 HOH A 62 64 64 HOH HOH . H 5 HOH A 63 65 65 HOH HOH . H 5 HOH A 64 66 66 HOH HOH . H 5 HOH A 65 67 67 HOH HOH . H 5 HOH A 66 68 68 HOH HOH . H 5 HOH A 67 69 69 HOH HOH . H 5 HOH A 68 70 70 HOH HOH . H 5 HOH A 69 71 71 HOH HOH . H 5 HOH A 70 72 72 HOH HOH . H 5 HOH A 71 73 73 HOH HOH . H 5 HOH A 72 74 74 HOH HOH . H 5 HOH A 73 76 76 HOH HOH . H 5 HOH A 74 77 77 HOH HOH . H 5 HOH A 75 78 78 HOH HOH . H 5 HOH A 76 79 79 HOH HOH . H 5 HOH A 77 80 80 HOH HOH . H 5 HOH A 78 81 81 HOH HOH . H 5 HOH A 79 82 82 HOH HOH . H 5 HOH A 80 83 83 HOH HOH . H 5 HOH A 81 84 84 HOH HOH . H 5 HOH A 82 85 85 HOH HOH . H 5 HOH A 83 86 86 HOH HOH . H 5 HOH A 84 87 87 HOH HOH . H 5 HOH A 85 88 88 HOH HOH . H 5 HOH A 86 89 89 HOH HOH . H 5 HOH A 87 90 90 HOH HOH . H 5 HOH A 88 91 91 HOH HOH . H 5 HOH A 89 92 92 HOH HOH . H 5 HOH A 90 93 93 HOH HOH . H 5 HOH A 91 94 94 HOH HOH . H 5 HOH A 92 95 95 HOH HOH . H 5 HOH A 93 96 96 HOH HOH . H 5 HOH A 94 97 97 HOH HOH . H 5 HOH A 95 98 98 HOH HOH . H 5 HOH A 96 100 100 HOH HOH . H 5 HOH A 97 101 101 HOH HOH . H 5 HOH A 98 102 102 HOH HOH . H 5 HOH A 99 103 103 HOH HOH . H 5 HOH A 100 104 104 HOH HOH . H 5 HOH A 101 105 105 HOH HOH . H 5 HOH A 102 269 106 HOH HOH . H 5 HOH A 103 270 107 HOH HOH . H 5 HOH A 104 271 108 HOH HOH . H 5 HOH A 105 272 109 HOH HOH . H 5 HOH A 106 273 110 HOH HOH . H 5 HOH A 107 274 111 HOH HOH . H 5 HOH A 108 275 112 HOH HOH . H 5 HOH A 109 276 113 HOH HOH . H 5 HOH A 110 277 114 HOH HOH . H 5 HOH A 111 278 115 HOH HOH . H 5 HOH A 112 279 116 HOH HOH . H 5 HOH A 113 280 118 HOH HOH . H 5 HOH A 114 281 119 HOH HOH . H 5 HOH A 115 282 120 HOH HOH . H 5 HOH A 116 283 121 HOH HOH . H 5 HOH A 117 284 122 HOH HOH . H 5 HOH A 118 285 123 HOH HOH . H 5 HOH A 119 286 124 HOH HOH . H 5 HOH A 120 287 125 HOH HOH . H 5 HOH A 121 288 127 HOH HOH . H 5 HOH A 122 289 128 HOH HOH . H 5 HOH A 123 290 129 HOH HOH . H 5 HOH A 124 291 130 HOH HOH . H 5 HOH A 125 292 131 HOH HOH . H 5 HOH A 126 293 132 HOH HOH . H 5 HOH A 127 294 133 HOH HOH . H 5 HOH A 128 295 134 HOH HOH . H 5 HOH A 129 296 135 HOH HOH . H 5 HOH A 130 297 136 HOH HOH . H 5 HOH A 131 298 137 HOH HOH . H 5 HOH A 132 299 138 HOH HOH . H 5 HOH A 133 300 139 HOH HOH . H 5 HOH A 134 301 140 HOH HOH . H 5 HOH A 135 302 141 HOH HOH . H 5 HOH A 136 303 142 HOH HOH . H 5 HOH A 137 304 143 HOH HOH . H 5 HOH A 138 305 144 HOH HOH . H 5 HOH A 139 306 145 HOH HOH . H 5 HOH A 140 307 146 HOH HOH . H 5 HOH A 141 308 147 HOH HOH . H 5 HOH A 142 309 148 HOH HOH . H 5 HOH A 143 310 149 HOH HOH . H 5 HOH A 144 311 151 HOH HOH . H 5 HOH A 145 312 152 HOH HOH . H 5 HOH A 146 313 153 HOH HOH . H 5 HOH A 147 314 154 HOH HOH . H 5 HOH A 148 315 155 HOH HOH . H 5 HOH A 149 316 156 HOH HOH . H 5 HOH A 150 317 157 HOH HOH . H 5 HOH A 151 318 158 HOH HOH . H 5 HOH A 152 319 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.982 _atom_site.Cartn_y -10.374 _atom_site.Cartn_z 15.264 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 5.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 267 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #