data_3LKB # _model_server_result.job_id pCGQ4MXnRwL7GkE6pUc77w _model_server_result.datetime_utc '2024-11-26 03:07:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3lkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":393}' # _entry.id 3LKB # _exptl.entry_id 3LKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 117.146 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description VALINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3LKB _cell.length_a 76.708 _cell.length_b 83.176 _cell.length_c 122.002 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3LKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 344 A ASP 344 1_555 E NA NA . A NA 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc2 A OD1 ASP 344 A ASP 344 1_555 E NA NA . A NA 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc3 A O THR 351 A THR 351 1_555 E NA NA . A NA 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 A O GLY 352 A GLY 352 1_555 E NA NA . A NA 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc5 E NA NA . A NA 394 1_555 I O HOH . A HOH 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 B OD1 ASP 344 B ASP 344 1_555 H NA NA . B NA 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc7 B O ASP 344 B ASP 344 1_555 H NA NA . B NA 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc8 B O THR 351 B THR 351 1_555 H NA NA . B NA 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc9 B O GLY 352 B GLY 352 1_555 H NA NA . B NA 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc10 H NA NA . B NA 394 1_555 J O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? # _chem_comp.formula 'C5 H11 N O2' _chem_comp.formula_weight 117.146 _chem_comp.id VAL _chem_comp.mon_nstd_flag y _chem_comp.name VALINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA VAL sing 369 n n N H VAL sing 370 n n N H2 VAL sing 371 n n CA C VAL sing 372 n n CA CB VAL sing 373 n n CA HA VAL sing 374 n n C O VAL doub 375 n n C OXT VAL sing 376 n n CB CG1 VAL sing 377 n n CB CG2 VAL sing 378 n n CB HB VAL sing 379 n n CG1 HG11 VAL sing 380 n n CG1 HG12 VAL sing 381 n n CG1 HG13 VAL sing 382 n n CG2 HG21 VAL sing 383 n n CG2 HG22 VAL sing 384 n n CG2 HG23 VAL sing 385 n n OXT HXT VAL sing 386 n n # _atom_sites.entry_id 3LKB _atom_sites.fract_transf_matrix[1][1] 0.013036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VAL A 1 393 1 VAL VAL . D 3 IPA A 1 4571 4571 IPA IPA . E 4 NA A 1 394 280 NA NA . F 2 VAL B 1 393 1 VAL VAL . G 3 IPA B 1 4571 4571 IPA IPA . H 4 NA B 1 394 281 NA NA . I 5 HOH A 1 395 1 HOH HOH . I 5 HOH A 2 396 2 HOH HOH . I 5 HOH A 3 397 3 HOH HOH . I 5 HOH A 4 398 11 HOH HOH . I 5 HOH A 5 399 13 HOH HOH . I 5 HOH A 6 400 16 HOH HOH . I 5 HOH A 7 401 17 HOH HOH . I 5 HOH A 8 402 18 HOH HOH . I 5 HOH A 9 403 19 HOH HOH . I 5 HOH A 10 404 21 HOH HOH . I 5 HOH A 11 405 24 HOH HOH . I 5 HOH A 12 406 25 HOH HOH . I 5 HOH A 13 407 26 HOH HOH . I 5 HOH A 14 408 27 HOH HOH . I 5 HOH A 15 409 28 HOH HOH . I 5 HOH A 16 410 31 HOH HOH . I 5 HOH A 17 411 32 HOH HOH . I 5 HOH A 18 412 34 HOH HOH . I 5 HOH A 19 413 35 HOH HOH . I 5 HOH A 20 414 36 HOH HOH . I 5 HOH A 21 415 38 HOH HOH . I 5 HOH A 22 416 39 HOH HOH . I 5 HOH A 23 417 40 HOH HOH . I 5 HOH A 24 418 44 HOH HOH . I 5 HOH A 25 419 45 HOH HOH . I 5 HOH A 26 420 47 HOH HOH . I 5 HOH A 27 421 48 HOH HOH . I 5 HOH A 28 422 51 HOH HOH . I 5 HOH A 29 423 54 HOH HOH . I 5 HOH A 30 424 60 HOH HOH . I 5 HOH A 31 425 61 HOH HOH . I 5 HOH A 32 426 64 HOH HOH . I 5 HOH A 33 427 67 HOH HOH . I 5 HOH A 34 428 68 HOH HOH . I 5 HOH A 35 429 69 HOH HOH . I 5 HOH A 36 430 75 HOH HOH . I 5 HOH A 37 431 76 HOH HOH . I 5 HOH A 38 432 77 HOH HOH . I 5 HOH A 39 433 81 HOH HOH . I 5 HOH A 40 434 83 HOH HOH . I 5 HOH A 41 435 92 HOH HOH . I 5 HOH A 42 436 96 HOH HOH . I 5 HOH A 43 437 99 HOH HOH . I 5 HOH A 44 438 101 HOH HOH . I 5 HOH A 45 439 104 HOH HOH . I 5 HOH A 46 440 107 HOH HOH . I 5 HOH A 47 441 108 HOH HOH . I 5 HOH A 48 442 109 HOH HOH . I 5 HOH A 49 443 111 HOH HOH . I 5 HOH A 50 444 114 HOH HOH . I 5 HOH A 51 445 115 HOH HOH . I 5 HOH A 52 446 116 HOH HOH . I 5 HOH A 53 447 117 HOH HOH . I 5 HOH A 54 448 122 HOH HOH . I 5 HOH A 55 449 125 HOH HOH . I 5 HOH A 56 450 126 HOH HOH . I 5 HOH A 57 451 127 HOH HOH . I 5 HOH A 58 452 131 HOH HOH . I 5 HOH A 59 453 133 HOH HOH . I 5 HOH A 60 454 138 HOH HOH . I 5 HOH A 61 455 139 HOH HOH . J 5 HOH B 1 395 4 HOH HOH . J 5 HOH B 2 396 5 HOH HOH . J 5 HOH B 3 397 6 HOH HOH . J 5 HOH B 4 398 7 HOH HOH . J 5 HOH B 5 399 8 HOH HOH . J 5 HOH B 6 400 9 HOH HOH . J 5 HOH B 7 401 10 HOH HOH . J 5 HOH B 8 402 12 HOH HOH . J 5 HOH B 9 403 14 HOH HOH . J 5 HOH B 10 404 15 HOH HOH . J 5 HOH B 11 405 20 HOH HOH . J 5 HOH B 12 406 22 HOH HOH . J 5 HOH B 13 407 23 HOH HOH . J 5 HOH B 14 408 30 HOH HOH . J 5 HOH B 15 409 33 HOH HOH . J 5 HOH B 16 410 37 HOH HOH . J 5 HOH B 17 411 41 HOH HOH . J 5 HOH B 18 412 42 HOH HOH . J 5 HOH B 19 413 43 HOH HOH . J 5 HOH B 20 414 46 HOH HOH . J 5 HOH B 21 415 49 HOH HOH . J 5 HOH B 22 416 50 HOH HOH . J 5 HOH B 23 417 52 HOH HOH . J 5 HOH B 24 418 53 HOH HOH . J 5 HOH B 25 419 55 HOH HOH . J 5 HOH B 26 420 56 HOH HOH . J 5 HOH B 27 421 57 HOH HOH . J 5 HOH B 28 422 58 HOH HOH . J 5 HOH B 29 423 59 HOH HOH . J 5 HOH B 30 424 62 HOH HOH . J 5 HOH B 31 425 65 HOH HOH . J 5 HOH B 32 426 66 HOH HOH . J 5 HOH B 33 427 70 HOH HOH . J 5 HOH B 34 428 71 HOH HOH . J 5 HOH B 35 429 72 HOH HOH . J 5 HOH B 36 430 73 HOH HOH . J 5 HOH B 37 431 74 HOH HOH . J 5 HOH B 38 432 78 HOH HOH . J 5 HOH B 39 433 79 HOH HOH . J 5 HOH B 40 434 80 HOH HOH . J 5 HOH B 41 435 82 HOH HOH . J 5 HOH B 42 436 84 HOH HOH . J 5 HOH B 43 437 86 HOH HOH . J 5 HOH B 44 438 87 HOH HOH . J 5 HOH B 45 439 88 HOH HOH . J 5 HOH B 46 440 89 HOH HOH . J 5 HOH B 47 441 90 HOH HOH . J 5 HOH B 48 442 91 HOH HOH . J 5 HOH B 49 443 93 HOH HOH . J 5 HOH B 50 444 94 HOH HOH . J 5 HOH B 51 445 95 HOH HOH . J 5 HOH B 52 446 97 HOH HOH . J 5 HOH B 53 447 98 HOH HOH . J 5 HOH B 54 448 100 HOH HOH . J 5 HOH B 55 449 102 HOH HOH . J 5 HOH B 56 450 112 HOH HOH . J 5 HOH B 57 451 113 HOH HOH . J 5 HOH B 58 452 118 HOH HOH . J 5 HOH B 59 453 123 HOH HOH . J 5 HOH B 60 454 124 HOH HOH . J 5 HOH B 61 455 128 HOH HOH . J 5 HOH B 62 456 130 HOH HOH . J 5 HOH B 63 457 132 HOH HOH . J 5 HOH B 64 458 134 HOH HOH . J 5 HOH B 65 459 135 HOH HOH . J 5 HOH B 66 460 140 HOH HOH . J 5 HOH B 67 461 144 HOH HOH . J 5 HOH B 68 462 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N VAL . . . F 2 46.903 70.589 11.697 1 8.68 ? N VAL 393 B 1 HETATM 2 C CA VAL . . . F 2 46.839 71.142 13.068 1 8.47 ? CA VAL 393 B 1 HETATM 3 C C VAL . . . F 2 47.322 70.088 13.992 1 11.78 ? C VAL 393 B 1 HETATM 4 O O VAL . . . F 2 48.01 70.442 14.941 1 15.53 ? O VAL 393 B 1 HETATM 5 C CB VAL . . . F 2 45.416 71.627 13.475 1 7.87 ? CB VAL 393 B 1 HETATM 6 C CG1 VAL . . . F 2 44.503 70.542 13.822 1 4.96 ? CG1 VAL 393 B 1 HETATM 7 C CG2 VAL . . . F 2 45.509 72.54 14.546 1 4.3 ? CG2 VAL 393 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #